Wall clock time and date at job start Tue Mar 31 2020 09:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.48704 * 2 1 4 4 C 1.53056 * 109.50182 * 120.04778 * 2 1 3 5 5 N 1.46958 * 109.35946 * 178.38342 * 4 2 1 6 6 C 1.39671 * 110.99721 * 176.81388 * 5 4 2 7 7 C 1.38950 * 120.05943 * 67.75337 * 6 5 4 8 8 C 1.38099 * 119.97230 * 180.02562 * 7 6 5 9 9 C 1.38269 * 120.09894 * 359.97438 * 8 7 6 10 10 C 1.38492 * 120.12583 * 0.02562 * 9 8 7 11 11 F 1.35100 * 119.99085 * 180.02562 * 10 9 8 12 12 C 1.38349 * 120.02420 * 359.76638 * 10 9 8 13 13 C 1.46961 * 110.88102 * 300.67775 * 5 4 2 14 14 C 1.53051 * 109.36229 * 59.32550 * 13 5 4 15 15 N 1.46951 * 109.49302 * 239.94921 * 2 1 3 16 16 C 1.46909 * 110.99858 * 56.82426 * 15 2 1 17 17 C 1.52991 * 109.47208 * 197.28914 * 16 15 2 18 18 H 1.09000 * 109.47002 * 53.51087 * 17 16 15 19 19 O 1.42896 * 109.47274 * 293.51302 * 17 16 15 20 20 C 1.50699 * 109.47186 * 173.50970 * 17 16 15 21 21 H 1.07999 * 120.00091 * 0.02562 * 20 17 16 22 22 C 1.37881 * 120.00188 * 179.97438 * 20 17 16 23 23 N 1.31510 * 120.00043 * 179.97438 * 22 20 17 24 24 Si 1.86805 * 119.99872 * 0.02562 * 22 20 17 25 25 H 1.48506 * 109.47047 * 89.99378 * 24 22 20 26 26 H 1.48497 * 109.47052 * 209.99507 * 24 22 20 27 27 H 1.48496 * 109.47036 * 329.99692 * 24 22 20 28 28 H 1.09002 * 109.47043 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47504 * 300.00872 * 1 2 3 30 30 H 1.09004 * 109.46614 * 60.00622 * 1 2 3 31 31 H 1.08993 * 109.49138 * 298.34780 * 4 2 1 32 32 H 1.09001 * 109.48660 * 58.41571 * 4 2 1 33 33 H 1.07997 * 120.01450 * 0.02562 * 7 6 5 34 34 H 1.08003 * 119.94800 * 179.97438 * 8 7 6 35 35 H 1.08000 * 119.93628 * 180.02562 * 9 8 7 36 36 H 1.07991 * 120.05648 * 180.27911 * 12 10 9 37 37 H 1.09001 * 109.48803 * 299.35691 * 13 5 4 38 38 H 1.08998 * 109.48868 * 179.29247 * 13 5 4 39 39 H 1.09003 * 109.48944 * 181.63204 * 14 13 5 40 40 H 1.08994 * 109.50898 * 61.57607 * 14 13 5 41 41 H 1.08997 * 109.47049 * 317.29175 * 16 15 2 42 42 H 1.09006 * 109.46675 * 77.29172 * 16 15 2 43 43 H 0.96701 * 114.00108 * 299.99637 * 19 17 16 44 44 H 0.96999 * 120.00150 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0409 -0.7224 1.2489 5 7 3.5100 -0.7545 1.2263 6 6 4.0156 -1.3438 2.3873 7 6 3.8139 -2.6978 2.6252 8 6 4.3142 -3.2784 3.7740 9 6 5.0162 -2.5145 4.6880 10 6 5.2196 -1.1645 4.4550 11 9 5.9064 -0.4208 5.3496 12 6 4.7244 -0.5785 3.3037 13 6 4.0004 -1.4483 0.0271 14 6 3.4894 -0.7258 -1.2217 15 7 2.0204 -0.6937 -1.1991 16 6 1.4885 -0.0740 -2.4203 17 6 1.6493 -1.0412 -3.5947 18 1 1.2005 -2.0011 -3.3389 19 8 3.0387 -1.2245 -3.8741 20 6 0.9629 -0.4738 -4.8104 21 1 0.4624 0.4814 -4.7514 22 6 0.9747 -1.1737 -5.9983 23 7 0.3753 -0.6787 -7.0591 24 14 1.8410 -2.8256 -6.1006 25 1 0.8838 -3.9084 -5.7593 26 1 2.3512 -3.0324 -7.4797 27 1 2.9765 -2.8490 -5.1440 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.7025 -0.1929 2.1394 32 1 1.6550 -1.7417 1.2628 33 1 3.2662 -3.2959 1.9121 34 1 4.1568 -4.3309 3.9588 35 1 5.4066 -2.9714 5.5853 36 1 4.8866 0.4731 3.1193 37 1 3.6367 -2.4758 0.0272 38 1 5.0904 -1.4479 0.0270 39 1 3.8279 -1.2554 -2.1123 40 1 3.8753 0.2934 -1.2360 41 1 0.4322 0.1558 -2.2807 42 1 2.0358 0.8453 -2.6291 43 1 3.5032 -0.4098 -4.1099 44 1 0.3833 -1.1712 -7.8947 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930554962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:00 Heat of formation + Delta-G solvation = -62.984512 kcal Electronic energy + Delta-G solvation = -25821.819669 eV Core-core repulsion = 22074.197181 eV Total energy + Delta-G solvation = -3747.622488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.91785 -41.35112 -39.66249 -37.91931 -36.03707 -34.42606 -33.24857 -31.98674 -31.41122 -30.08287 -28.41013 -27.28395 -25.26289 -23.86928 -23.53495 -22.48969 -21.95687 -20.60869 -19.28077 -18.73633 -17.35079 -17.19783 -17.01044 -16.83438 -16.60805 -16.58554 -16.38765 -16.12221 -15.79616 -15.35815 -14.93065 -14.81488 -14.62569 -14.51843 -13.89572 -13.74818 -13.57028 -13.28628 -12.98563 -12.95785 -12.85253 -12.69117 -12.61921 -12.44442 -12.26003 -12.05547 -11.97979 -11.77354 -11.41215 -11.02009 -10.77373 -10.01651 -9.94782 -9.71592 -9.53270 -9.12241 -8.32837 -6.47185 0.07961 0.21177 1.43395 1.48415 1.78047 2.46510 2.53347 2.59884 2.97948 3.05502 3.37762 3.77554 3.89235 3.97275 4.05231 4.09230 4.10022 4.15658 4.29135 4.30001 4.41091 4.42516 4.47659 4.55331 4.62600 4.71594 4.76126 4.87502 4.91659 5.02148 5.03537 5.11737 5.19093 5.23060 5.30077 5.37576 5.42825 5.45702 5.58260 5.75669 5.81366 6.08495 6.19378 6.32638 6.35927 6.65908 7.19552 7.36088 8.81378 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.026658 B = 0.003106 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.081730 B = 9012.152290 C = 9443.172639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.080 3.920 3 H 0.036 0.964 4 C 0.079 3.921 5 N -0.515 5.515 6 C 0.111 3.889 7 C -0.161 4.161 8 C -0.075 4.075 9 C -0.155 4.155 10 C 0.089 3.911 11 F -0.147 7.147 12 C -0.141 4.141 13 C 0.071 3.929 14 C 0.046 3.954 15 N -0.535 5.535 16 C 0.050 3.950 17 C 0.214 3.786 18 H 0.053 0.947 19 O -0.574 6.574 20 C -0.563 4.563 21 H 0.035 0.965 22 C 0.027 3.973 23 N -0.942 5.942 24 Si 0.941 3.059 25 H -0.288 1.288 26 H -0.301 1.301 27 H -0.200 1.200 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.131 0.869 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.136 0.864 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.023 0.977 43 H 0.365 0.635 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.626 -4.073 24.622 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 H 0.054 0.946 4 C -0.047 4.047 5 N -0.237 5.237 6 C 0.017 3.983 7 C -0.181 4.181 8 C -0.093 4.093 9 C -0.174 4.174 10 C 0.070 3.930 11 F -0.126 7.126 12 C -0.161 4.161 13 C -0.055 4.055 14 C -0.082 4.082 15 N -0.260 5.260 16 C -0.078 4.078 17 C 0.156 3.844 18 H 0.071 0.929 19 O -0.381 6.381 20 C -0.601 4.601 21 H 0.053 0.947 22 C -0.172 4.172 23 N -0.581 5.581 24 Si 0.765 3.235 25 H -0.215 1.215 26 H -0.228 1.228 27 H -0.122 1.122 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.149 0.851 34 H 0.178 0.822 35 H 0.174 0.826 36 H 0.154 0.846 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.126 0.874 40 H 0.045 0.955 41 H 0.095 0.905 42 H 0.041 0.959 43 H 0.213 0.787 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.460 -4.652 24.626 26.451 hybrid contribution 0.083 0.635 -0.873 1.082 sum 8.543 -4.017 23.753 25.560 Atomic orbital electron populations 1.21872 0.93239 1.02721 1.02344 1.21705 0.95927 0.95429 0.89802 0.94620 1.22188 0.84916 1.00051 0.97550 1.59741 1.09471 1.53788 1.00660 1.18619 0.96709 0.91446 0.91481 1.21941 1.01749 0.95250 0.99206 1.21197 0.94858 1.01228 0.92032 1.21448 1.01878 0.91610 1.02428 1.17739 0.96541 0.90290 0.88461 1.91487 1.77425 1.76972 1.66670 1.21008 1.00251 1.01550 0.93314 1.22200 0.99844 0.95833 0.87671 1.22564 0.87091 0.99382 0.99174 1.62217 1.08805 1.53472 1.01534 1.22587 1.00011 0.95330 0.89839 1.19480 0.79555 0.95191 0.90177 0.92906 1.86568 1.23625 1.37418 1.90515 1.21830 1.35826 1.06322 0.96103 0.94696 1.25868 0.94520 1.01879 0.94937 1.70088 1.44883 1.40881 1.02276 0.85964 0.81582 0.78267 0.77649 1.21503 1.22844 1.12166 0.92004 0.90158 0.92907 0.89303 0.93430 0.85129 0.82161 0.82560 0.84584 0.93560 0.89671 0.87418 0.95509 0.90537 0.95902 0.78741 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.93 71.98 0.64 -2.84 16 2 C 0.08 2.12 2.56 44.92 0.12 2.23 16 3 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 4 C 0.08 1.80 4.68 86.31 0.40 2.20 16 5 N -0.51 -11.94 4.68 -694.79 -3.25 -15.19 16 6 C 0.11 2.30 4.72 38.21 0.18 2.48 16 7 C -0.16 -2.82 8.68 22.41 0.19 -2.63 16 8 C -0.07 -1.00 10.04 22.24 0.22 -0.78 16 9 C -0.16 -2.24 10.02 22.34 0.22 -2.01 16 10 C 0.09 1.68 7.30 22.36 0.16 1.84 16 11 F -0.15 -3.00 17.27 44.97 0.78 -2.22 16 12 C -0.14 -2.88 9.95 22.44 0.22 -2.65 16 13 C 0.07 1.74 5.26 86.31 0.45 2.20 16 14 C 0.05 1.33 5.28 86.31 0.46 1.79 16 15 N -0.53 -16.80 4.47 -870.48 -3.89 -20.69 16 16 C 0.05 1.87 4.57 86.30 0.39 2.27 16 17 C 0.21 9.45 2.51 29.84 0.07 9.52 16 18 H 0.05 2.47 7.57 -2.39 -0.02 2.45 16 19 O -0.57 -23.32 7.12 -148.98 -1.06 -24.38 16 20 C -0.56 -30.84 9.34 25.60 0.24 -30.60 16 21 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 22 C 0.03 1.56 5.47 84.66 0.46 2.03 16 23 N -0.94 -58.13 13.96 21.45 0.30 -57.83 16 24 Si 0.94 44.54 26.99 68.60 1.85 46.39 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 27 H -0.20 -8.85 5.31 99.48 0.53 -8.32 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.44 6.02 -2.38 -0.01 1.42 16 31 H 0.09 1.79 8.13 -2.39 -0.02 1.77 16 32 H 0.05 1.09 7.68 -2.39 -0.02 1.07 16 33 H 0.13 2.24 7.05 -2.91 -0.02 2.22 16 34 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 36 H 0.14 2.78 8.06 -2.92 -0.02 2.75 16 37 H 0.05 1.15 7.05 -2.39 -0.02 1.13 16 38 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 39 H 0.11 3.43 5.21 -2.39 -0.01 3.42 16 40 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 2.92 5.45 -2.39 -0.01 2.91 16 42 H 0.02 0.87 8.03 -2.38 -0.02 0.85 16 43 H 0.36 13.30 9.04 -74.06 -0.67 12.63 16 44 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -64.28 345.70 -0.67 -64.94 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.16 Total: 23.95 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 4.45 Total: -14.96 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -6.84 Total: -93.72 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -1.06 Total: -24.38 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.22 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.85 Total: 46.39 kcal Total: -64.28 -0.67 -64.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930554962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.957 kcal (2) G-P(sol) polarization free energy of solvation -64.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds