Wall clock time and date at job start Tue Mar 31 2020 10:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00175 * 2 1 4 4 H 1.48490 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47142 * 299.99985 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99744 * 3 2 1 7 7 C 1.38810 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00444 * 196.74956 * 7 2 1 9 9 N 1.36942 * 119.99728 * 16.74261 * 7 2 1 10 10 C 1.47173 * 121.05983 * 205.74728 * 9 7 2 11 11 C 1.53281 * 108.48617 * 231.23050 * 10 9 7 12 12 O 1.43084 * 109.23137 * 307.00944 * 11 10 9 13 13 C 1.42056 * 114.40411 * 61.13532 * 12 11 10 14 14 C 1.54527 * 110.32679 * 177.47095 * 13 12 11 15 15 C 1.55027 * 101.52790 * 276.06645 * 14 13 12 16 16 N 1.47480 * 104.89863 * 323.62181 * 15 14 13 17 17 C 1.34780 * 125.66472 * 204.02249 * 16 15 14 18 18 O 1.21269 * 120.00385 * 180.02562 * 17 16 15 19 19 C 1.50700 * 119.99737 * 0.02562 * 17 16 15 20 20 C 1.52998 * 109.47484 * 179.97438 * 19 17 16 21 21 C 1.53776 * 113.61614 * 272.50060 * 20 19 17 22 22 C 1.53779 * 87.08260 * 220.01409 * 21 20 19 23 23 C 1.53772 * 113.62044 * 174.99703 * 20 19 17 24 24 C 1.47186 * 108.67032 * 24.28454 * 16 15 14 25 25 C 1.47290 * 121.05882 * 25.76787 * 9 7 2 26 26 H 0.97000 * 119.99834 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.63217 * 111.52899 * 10 9 7 28 28 H 1.09002 * 109.79689 * 351.02643 * 10 9 7 29 29 H 1.09008 * 109.51001 * 187.08538 * 11 10 9 30 30 H 1.09006 * 109.51383 * 66.94252 * 11 10 9 31 31 H 1.08999 * 111.01515 * 158.00704 * 14 13 12 32 32 H 1.08990 * 111.01493 * 34.12787 * 14 13 12 33 33 H 1.08997 * 110.35537 * 204.76217 * 15 14 13 34 34 H 1.09001 * 110.44389 * 82.52061 * 15 14 13 35 35 H 1.09006 * 109.47531 * 60.00087 * 19 17 16 36 36 H 1.09000 * 109.47313 * 300.00218 * 19 17 16 37 37 H 1.09010 * 112.84522 * 43.80297 * 20 19 17 38 38 H 1.08998 * 113.61255 * 334.56289 * 21 20 19 39 39 H 1.09003 * 113.61902 * 105.46604 * 21 20 19 40 40 H 1.09005 * 113.61435 * 270.88659 * 22 21 20 41 41 H 1.08996 * 113.61652 * 139.97875 * 22 21 20 42 42 H 1.08997 * 113.62270 * 254.53264 * 23 20 19 43 43 H 1.09003 * 113.61504 * 25.43698 * 23 20 19 44 44 H 1.09000 * 109.90437 * 117.59832 * 24 16 15 45 45 H 1.09006 * 109.90779 * 238.84986 * 24 16 15 46 46 H 1.09000 * 109.64100 * 10.94025 * 25 9 7 47 47 H 1.09006 * 109.63620 * 250.33283 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0559 -1.2218 0.2701 9 7 1.3691 -2.3631 -0.3406 10 6 1.8396 -3.6652 0.1585 11 6 1.9942 -4.6158 -1.0339 12 8 0.7728 -4.6398 -1.7789 13 6 0.3909 -3.3833 -2.3206 14 6 -0.9009 -3.5292 -3.1559 15 6 -0.3355 -3.9949 -4.5222 16 7 0.9355 -3.2628 -4.6760 17 6 1.5446 -2.9829 -5.8453 18 8 2.5923 -2.3722 -5.8523 19 6 0.9236 -3.4288 -7.1440 20 6 1.8090 -2.9869 -8.3109 21 6 1.4963 -1.5696 -8.8191 22 6 1.7049 -2.1182 -10.2405 23 6 1.3267 -3.4987 -9.6784 24 6 1.4315 -2.8941 -3.3402 25 6 0.1870 -2.3484 -1.2191 26 1 -0.4850 0.8401 -0.0004 27 1 1.1119 -4.0731 0.8602 28 1 2.8012 -3.5438 0.6573 29 1 2.2201 -5.6191 -0.6728 30 1 2.8046 -4.2676 -1.6744 31 1 -1.4149 -2.5727 -3.2511 32 1 -1.5600 -4.2843 -2.7278 33 1 -1.0234 -3.7333 -5.3262 34 1 -0.1552 -5.0698 -4.5132 35 1 -0.0642 -2.9797 -7.2475 36 1 0.8312 -4.5149 -7.1485 37 1 2.8691 -3.1626 -8.1280 38 1 0.4733 -1.2502 -8.6201 39 1 2.2375 -0.8266 -8.5247 40 1 2.7369 -2.0551 -10.5857 41 1 0.9901 -1.7317 -10.9669 42 1 1.9310 -4.3132 -10.0778 43 1 0.2573 -3.7067 -9.7144 44 1 2.3914 -3.3762 -3.1547 45 1 1.5372 -1.8115 -3.2692 46 1 0.0722 -1.3593 -1.6624 47 1 -0.7023 -2.5993 -0.6408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972315743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:34 Heat of formation + Delta-G solvation = -31.923062 kcal Electronic energy + Delta-G solvation = -26933.767978 eV Core-core repulsion = 23310.952721 eV Total energy + Delta-G solvation = -3622.815257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.30304 -39.26112 -37.98864 -36.03406 -34.47459 -31.90183 -31.26365 -30.39371 -29.04243 -27.54111 -25.84099 -25.68081 -23.77319 -23.26151 -22.74523 -21.06992 -19.54066 -19.17856 -18.65264 -17.07372 -16.81705 -16.34889 -15.91135 -15.30879 -15.02596 -14.73108 -14.54733 -14.33349 -14.12389 -13.89211 -13.47739 -13.20015 -12.96872 -12.77704 -12.57750 -12.53942 -12.05435 -11.91749 -11.74689 -11.50415 -11.40483 -11.09959 -11.06237 -10.83720 -10.77862 -10.70833 -10.48066 -10.40406 -10.28453 -10.25108 -9.93194 -9.58411 -9.51719 -9.06583 -8.55582 -8.33789 -6.77181 -5.86113 -3.28222 2.88162 3.21667 3.35406 3.43853 3.46009 4.19688 4.40310 4.44491 4.51978 4.59516 4.74189 4.81269 4.84930 5.09628 5.21713 5.26712 5.34146 5.39178 5.42441 5.50478 5.55525 5.58592 5.63032 5.68646 5.74655 5.80945 5.82649 5.84769 6.00557 6.04089 6.07917 6.15895 6.19315 6.24673 6.31314 6.42235 6.49045 6.59498 6.62205 6.76316 7.03327 7.40110 7.71822 7.79387 7.88771 8.30557 8.42214 9.09563 9.72494 10.28933 11.22465 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.004130 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.140577 B = 6777.889548 C = 7892.731634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.110 3.890 11 C 0.044 3.956 12 O -0.376 6.376 13 C 0.085 3.915 14 C -0.117 4.117 15 C 0.103 3.897 16 N -0.617 5.617 17 C 0.523 3.477 18 O -0.542 6.542 19 C -0.126 4.126 20 C -0.094 4.094 21 C -0.135 4.135 22 C -0.143 4.143 23 C -0.138 4.138 24 C 0.097 3.903 25 C 0.164 3.836 26 H 0.254 0.746 27 H 0.027 0.973 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.339 -9.496 -15.023 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.319 5.319 10 C -0.016 4.016 11 C -0.034 4.034 12 O -0.295 6.295 13 C 0.043 3.957 14 C -0.156 4.156 15 C -0.020 4.020 16 N -0.352 5.352 17 C 0.312 3.688 18 O -0.420 6.420 19 C -0.166 4.166 20 C -0.113 4.113 21 C -0.172 4.172 22 C -0.180 4.180 23 C -0.175 4.175 24 C -0.025 4.025 25 C 0.037 3.963 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.115 0.885 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.927 -9.152 -15.099 17.761 hybrid contribution 0.505 1.032 0.252 1.176 sum -1.422 -8.120 -14.846 16.981 Atomic orbital electron populations 1.70013 1.05215 1.25547 1.54108 1.24999 0.95343 0.98384 1.00767 0.86227 0.79490 0.83817 0.77340 1.20153 1.21425 1.21627 1.19231 0.92622 0.84377 1.41845 0.91281 1.44126 1.32834 1.01276 1.53687 1.21581 0.98683 0.87524 0.93841 1.23105 0.86459 0.99821 0.94030 1.87645 1.41540 1.30196 1.70166 1.22703 0.92494 0.86596 0.93860 1.22708 0.96621 1.02998 0.93250 1.22347 0.85023 0.96474 0.98148 1.48697 1.24004 1.56167 1.06285 1.20335 0.84729 0.79526 0.84243 1.90691 1.23172 1.41101 1.86999 1.21672 1.00266 1.02555 0.92075 1.22341 1.00356 0.96637 0.91979 1.22942 1.01847 0.96886 0.95560 1.22793 1.01554 0.96798 0.96847 1.22979 1.01210 0.97153 0.96172 1.22481 0.98041 1.01600 0.80337 1.21243 0.89343 0.96869 0.88811 0.93563 0.95507 0.91875 0.89834 0.93487 0.89075 0.89080 0.90974 0.91210 0.89090 0.89099 0.88294 0.90376 0.91202 0.90308 0.91643 0.91564 0.90148 0.91367 0.90049 0.88513 0.94891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 11.13 55.49 0.62 -25.01 16 2 C 0.00 0.10 4.96 -17.43 -0.09 0.01 16 3 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.81 9.66 -15.06 -0.15 -6.96 16 8 H 0.07 1.85 7.88 -52.49 -0.41 1.44 16 9 N -0.60 -14.67 2.98 -172.18 -0.51 -15.19 16 10 C 0.11 2.28 6.71 -3.53 -0.02 2.26 16 11 C 0.04 0.78 6.75 37.30 0.25 1.04 16 12 O -0.38 -7.06 10.25 -35.23 -0.36 -7.42 16 13 C 0.09 1.60 0.81 -89.72 -0.07 1.53 16 14 C -0.12 -1.74 6.21 -24.86 -0.15 -1.89 16 15 C 0.10 1.32 6.69 -2.43 -0.02 1.31 16 16 N -0.62 -10.07 3.33 -170.67 -0.57 -10.64 16 17 C 0.52 8.50 7.85 -10.98 -0.09 8.42 16 18 O -0.54 -11.00 16.08 5.57 0.09 -10.91 16 19 C -0.13 -1.42 4.55 -27.88 -0.13 -1.54 16 20 C -0.09 -1.05 3.15 -89.82 -0.28 -1.33 16 21 C -0.13 -1.47 7.63 -25.92 -0.20 -1.67 16 22 C -0.14 -1.26 8.08 -25.92 -0.21 -1.47 16 23 C -0.14 -1.17 7.64 -25.92 -0.20 -1.37 16 24 C 0.10 1.90 5.97 -3.32 -0.02 1.88 16 25 C 0.16 3.77 3.98 -3.86 -0.02 3.76 16 26 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.25 7.97 -51.93 -0.41 0.83 16 29 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 30 H 0.05 0.87 6.24 -51.93 -0.32 0.55 16 31 H 0.09 1.33 8.01 -51.93 -0.42 0.92 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.88 7.55 -51.93 -0.39 0.48 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.28 7.67 -51.92 -0.40 0.88 16 38 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.60 8.10 -51.93 -0.42 0.17 16 44 H 0.07 1.41 6.02 -51.93 -0.31 1.10 16 45 H 0.08 1.83 7.62 -51.93 -0.40 1.44 16 46 H 0.10 2.49 5.91 -51.93 -0.31 2.18 16 47 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -31.51 363.40 -9.63 -41.13 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.95 Total: 1.82 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.38 Total: 3.97 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.46 Total: -50.83 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.27 Total: -18.33 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.51 -9.63 -41.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972315743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.210 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds