Wall clock time and date at job start Tue Mar 31 2020 10:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00175 * 2 1 4 4 H 1.48490 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47142 * 299.99985 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99744 * 3 2 1 7 7 C 1.38810 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00444 * 196.74956 * 7 2 1 9 9 N 1.36942 * 119.99728 * 16.74261 * 7 2 1 10 10 C 1.47173 * 121.05983 * 205.74728 * 9 7 2 11 11 C 1.53281 * 108.48617 * 231.23050 * 10 9 7 12 12 O 1.43084 * 109.23137 * 307.00944 * 11 10 9 13 13 C 1.42056 * 114.40411 * 61.13532 * 12 11 10 14 14 C 1.54527 * 110.32679 * 177.47095 * 13 12 11 15 15 C 1.55027 * 101.52790 * 276.06645 * 14 13 12 16 16 N 1.47480 * 104.89863 * 323.62181 * 15 14 13 17 17 C 1.34780 * 125.66472 * 204.02249 * 16 15 14 18 18 O 1.21269 * 120.00385 * 180.02562 * 17 16 15 19 19 C 1.50700 * 119.99737 * 0.02562 * 17 16 15 20 20 C 1.52998 * 109.47484 * 179.97438 * 19 17 16 21 21 C 1.53776 * 113.61614 * 272.50060 * 20 19 17 22 22 C 1.53779 * 87.08260 * 220.01409 * 21 20 19 23 23 C 1.53772 * 113.62044 * 174.99703 * 20 19 17 24 24 C 1.47186 * 108.67032 * 24.28454 * 16 15 14 25 25 C 1.47290 * 121.05882 * 25.76787 * 9 7 2 26 26 H 0.97000 * 119.99834 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.63217 * 111.52899 * 10 9 7 28 28 H 1.09002 * 109.79689 * 351.02643 * 10 9 7 29 29 H 1.09008 * 109.51001 * 187.08538 * 11 10 9 30 30 H 1.09006 * 109.51383 * 66.94252 * 11 10 9 31 31 H 1.08999 * 111.01515 * 158.00704 * 14 13 12 32 32 H 1.08990 * 111.01493 * 34.12787 * 14 13 12 33 33 H 1.08997 * 110.35537 * 204.76217 * 15 14 13 34 34 H 1.09001 * 110.44389 * 82.52061 * 15 14 13 35 35 H 1.09006 * 109.47531 * 60.00087 * 19 17 16 36 36 H 1.09000 * 109.47313 * 300.00218 * 19 17 16 37 37 H 1.09010 * 112.84522 * 43.80297 * 20 19 17 38 38 H 1.08998 * 113.61255 * 334.56289 * 21 20 19 39 39 H 1.09003 * 113.61902 * 105.46604 * 21 20 19 40 40 H 1.09005 * 113.61435 * 270.88659 * 22 21 20 41 41 H 1.08996 * 113.61652 * 139.97875 * 22 21 20 42 42 H 1.08997 * 113.62270 * 254.53264 * 23 20 19 43 43 H 1.09003 * 113.61504 * 25.43698 * 23 20 19 44 44 H 1.09000 * 109.90437 * 117.59832 * 24 16 15 45 45 H 1.09006 * 109.90779 * 238.84986 * 24 16 15 46 46 H 1.09000 * 109.64100 * 10.94025 * 25 9 7 47 47 H 1.09006 * 109.63620 * 250.33283 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0559 -1.2218 0.2701 9 7 1.3691 -2.3631 -0.3406 10 6 1.8396 -3.6652 0.1585 11 6 1.9942 -4.6158 -1.0339 12 8 0.7728 -4.6398 -1.7789 13 6 0.3909 -3.3833 -2.3206 14 6 -0.9009 -3.5292 -3.1559 15 6 -0.3355 -3.9949 -4.5222 16 7 0.9355 -3.2628 -4.6760 17 6 1.5446 -2.9829 -5.8453 18 8 2.5923 -2.3722 -5.8523 19 6 0.9236 -3.4288 -7.1440 20 6 1.8090 -2.9869 -8.3109 21 6 1.4963 -1.5696 -8.8191 22 6 1.7049 -2.1182 -10.2405 23 6 1.3267 -3.4987 -9.6784 24 6 1.4315 -2.8941 -3.3402 25 6 0.1870 -2.3484 -1.2191 26 1 -0.4850 0.8401 -0.0004 27 1 1.1119 -4.0731 0.8602 28 1 2.8012 -3.5438 0.6573 29 1 2.2201 -5.6191 -0.6728 30 1 2.8046 -4.2676 -1.6744 31 1 -1.4149 -2.5727 -3.2511 32 1 -1.5600 -4.2843 -2.7278 33 1 -1.0234 -3.7333 -5.3262 34 1 -0.1552 -5.0698 -4.5132 35 1 -0.0642 -2.9797 -7.2475 36 1 0.8312 -4.5149 -7.1485 37 1 2.8691 -3.1626 -8.1280 38 1 0.4733 -1.2502 -8.6201 39 1 2.2375 -0.8266 -8.5247 40 1 2.7369 -2.0551 -10.5857 41 1 0.9901 -1.7317 -10.9669 42 1 1.9310 -4.3132 -10.0778 43 1 0.2573 -3.7067 -9.7144 44 1 2.3914 -3.3762 -3.1547 45 1 1.5372 -1.8115 -3.2692 46 1 0.0722 -1.3593 -1.6624 47 1 -0.7023 -2.5993 -0.6408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972315743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:33 Heat of formation + Delta-G solvation = -51.617747 kcal Electronic energy + Delta-G solvation = -26934.622004 eV Core-core repulsion = 23310.952721 eV Total energy + Delta-G solvation = -3623.669283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65755 -40.45863 -39.09292 -37.47209 -36.29965 -33.40204 -33.14098 -31.45250 -30.39853 -29.20803 -27.52880 -26.43781 -25.20117 -24.82371 -23.84081 -22.65083 -20.63802 -20.26249 -20.09778 -18.90457 -18.18011 -17.80066 -16.96358 -16.92738 -16.34931 -16.16554 -15.97270 -15.63980 -15.45608 -15.23314 -15.10058 -14.82896 -14.52292 -14.10942 -13.71963 -13.45094 -13.30000 -13.26977 -13.04954 -12.92977 -12.78532 -12.69316 -12.52137 -12.38834 -12.23326 -12.18992 -12.14452 -11.80052 -11.49746 -11.23804 -11.17883 -11.05839 -10.87815 -10.76953 -10.52937 -9.69264 -8.76816 -7.95523 -5.39895 1.38560 1.42260 1.50999 1.63655 1.97033 2.42079 2.74920 3.18739 3.35154 3.50015 3.64826 3.73897 3.75769 3.82050 3.99808 4.00575 4.07740 4.21137 4.27474 4.37031 4.47629 4.49506 4.52599 4.57135 4.66576 4.71022 4.75647 4.81164 4.88619 4.90767 4.92711 5.01358 5.01902 5.05016 5.11430 5.16216 5.18308 5.20446 5.25737 5.41242 5.47947 5.56916 5.65036 6.24743 6.33220 6.56433 7.03347 7.15928 7.71524 8.24376 9.10584 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.004130 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.140577 B = 6777.889548 C = 7892.731634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.044 4.044 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.286 1.286 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.616 5.616 10 C 0.105 3.895 11 C 0.050 3.950 12 O -0.371 6.371 13 C 0.092 3.908 14 C -0.114 4.114 15 C 0.107 3.893 16 N -0.619 5.619 17 C 0.514 3.486 18 O -0.595 6.595 19 C -0.113 4.113 20 C -0.104 4.104 21 C -0.146 4.146 22 C -0.138 4.138 23 C -0.120 4.120 24 C 0.109 3.891 25 C 0.173 3.827 26 H 0.252 0.748 27 H 0.026 0.974 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.063 0.937 47 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 -11.785 -17.098 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.212 1.212 7 C -0.392 4.392 8 H 0.084 0.916 9 N -0.340 5.340 10 C -0.020 4.020 11 C -0.027 4.027 12 O -0.290 6.290 13 C 0.050 3.950 14 C -0.152 4.152 15 C -0.014 4.014 16 N -0.353 5.353 17 C 0.305 3.695 18 O -0.476 6.476 19 C -0.152 4.152 20 C -0.123 4.123 21 C -0.183 4.183 22 C -0.175 4.175 23 C -0.157 4.157 24 C -0.015 4.015 25 C 0.047 3.953 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.143 0.857 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.081 0.919 47 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -3.277 -11.486 -17.178 20.922 hybrid contribution 0.979 1.750 0.972 2.229 sum -2.297 -9.736 -16.206 19.044 Atomic orbital electron populations 1.70136 1.06271 1.25842 1.55333 1.25643 0.96090 1.00986 1.01218 0.85345 0.78659 0.80423 0.76935 1.19534 1.21948 1.21213 1.19488 0.92766 0.85761 1.41181 0.91610 1.44395 1.33065 1.02084 1.54479 1.21767 0.98677 0.86380 0.95222 1.23131 0.86015 1.01093 0.92474 1.87658 1.41767 1.29508 1.70022 1.22473 0.94616 0.85463 0.92456 1.22777 0.94797 1.03858 0.93756 1.22602 0.83719 0.97050 0.98052 1.48838 1.25215 1.56298 1.04930 1.21431 0.84134 0.78361 0.85571 1.90669 1.25739 1.43426 1.87778 1.21751 1.00705 1.04410 0.88353 1.22348 0.99094 0.97191 0.93692 1.23030 1.01468 0.96306 0.97505 1.22784 1.01930 0.97051 0.95782 1.22932 1.02570 0.96900 0.93296 1.22055 0.97790 0.98623 0.83058 1.21011 0.88165 0.96646 0.89449 0.93903 0.95594 0.91351 0.85737 0.94290 0.89355 0.86879 0.86717 0.89160 0.86371 0.86072 0.91085 0.89436 0.94170 0.90657 0.90061 0.90634 0.87904 0.93176 0.94510 0.91874 0.97038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.67 11.13 21.65 0.24 -54.43 16 2 C -0.04 -2.46 4.96 84.86 0.42 -2.04 16 3 Si 0.96 46.20 29.59 68.60 2.03 48.23 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.26 -14.69 9.66 84.03 0.81 -13.88 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.61 16 9 N -0.62 -31.31 2.98 -698.65 -2.08 -33.39 16 10 C 0.10 4.36 6.71 86.35 0.58 4.94 16 11 C 0.05 1.74 6.75 72.08 0.49 2.23 16 12 O -0.37 -13.29 10.25 -148.97 -1.53 -14.81 16 13 C 0.09 3.44 0.81 -10.21 -0.01 3.43 16 14 C -0.11 -3.12 6.21 31.81 0.20 -2.92 16 15 C 0.11 2.34 6.69 86.89 0.58 2.92 16 16 N -0.62 -19.48 3.33 -812.28 -2.71 -22.19 16 17 C 0.51 16.31 7.85 87.66 0.69 17.00 16 18 O -0.60 -25.07 16.08 -3.00 -0.05 -25.12 16 19 C -0.11 -2.18 4.55 29.85 0.14 -2.04 16 20 C -0.10 -2.15 3.15 -10.27 -0.03 -2.18 16 21 C -0.15 -3.06 7.63 31.12 0.24 -2.82 16 22 C -0.14 -2.14 8.08 31.12 0.25 -1.89 16 23 C -0.12 -1.61 7.64 31.12 0.24 -1.37 16 24 C 0.11 4.35 5.97 86.47 0.52 4.86 16 25 C 0.17 8.30 3.98 86.07 0.34 8.64 16 26 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 2.71 7.97 -2.39 -0.02 2.69 16 29 H 0.12 3.32 8.14 -2.38 -0.02 3.30 16 30 H 0.04 1.43 6.24 -2.38 -0.01 1.41 16 31 H 0.09 2.48 8.01 -2.39 -0.02 2.46 16 32 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.11 1.61 7.48 -2.39 -0.02 1.60 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.12 1.70 7.55 -2.38 -0.02 1.68 16 36 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.86 7.67 -2.38 -0.02 1.85 16 38 H 0.09 1.64 7.89 -2.39 -0.02 1.62 16 39 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.20 8.14 -2.38 -0.02 1.19 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.10 0.98 8.10 -2.39 -0.02 0.96 16 44 H 0.05 2.16 6.02 -2.39 -0.01 2.14 16 45 H 0.04 1.77 7.62 -2.38 -0.02 1.76 16 46 H 0.06 3.43 5.91 -2.39 -0.01 3.42 16 47 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -73.69 363.40 2.30 -71.40 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.94 Total: 15.46 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 5.45 Total: 14.85 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -4.55 Total: -110.01 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -1.57 Total: -39.93 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -73.69 2.30 -71.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972315743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.779 kcal (2) G-P(sol) polarization free energy of solvation -73.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds