Wall clock time and date at job start Tue Mar 31 2020 10:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00471 * 2 1 4 4 H 1.48501 * 109.47556 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47297 * 300.00186 * 3 2 1 6 6 H 1.48507 * 109.46773 * 59.99906 * 3 2 1 7 7 C 1.38819 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00024 * 163.61751 * 7 2 1 9 9 N 1.36939 * 119.99823 * 343.61604 * 7 2 1 10 10 C 1.47168 * 121.06605 * 153.87736 * 9 7 2 11 11 C 1.53271 * 108.55062 * 128.84436 * 10 9 7 12 12 O 1.43102 * 109.22538 * 52.89945 * 11 10 9 13 13 C 1.42061 * 114.33378 * 298.85168 * 12 11 10 14 14 C 1.54491 * 110.38556 * 182.83224 * 13 12 11 15 15 C 1.55026 * 101.53222 * 83.93445 * 14 13 12 16 16 N 1.47873 * 104.91357 * 36.46771 * 15 14 13 17 17 C 1.34783 * 125.87844 * 155.88658 * 16 15 14 18 18 O 1.21278 * 120.00363 * 179.97438 * 17 16 15 19 19 C 1.50702 * 119.99758 * 359.94563 * 17 16 15 20 20 C 1.52993 * 109.47056 * 179.97438 * 19 17 16 21 21 C 1.53784 * 113.61642 * 274.13356 * 20 19 17 22 22 C 1.53951 * 87.02262 * 220.04772 * 21 20 19 23 23 C 1.53779 * 87.11099 * 25.36233 * 22 21 20 24 24 C 1.47178 * 108.46147 * 335.83961 * 16 15 14 25 25 C 1.47306 * 121.06778 * 333.85938 * 9 7 2 26 26 H 0.96999 * 119.99669 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.62550 * 248.56893 * 10 9 7 28 28 H 1.09005 * 109.61964 * 9.12675 * 10 9 7 29 29 H 1.09002 * 109.51386 * 172.81890 * 11 10 9 30 30 H 1.08997 * 109.51734 * 292.92212 * 11 10 9 31 31 H 1.08999 * 111.01342 * 201.99566 * 14 13 12 32 32 H 1.08999 * 111.01489 * 325.83444 * 14 13 12 33 33 H 1.08997 * 110.35497 * 155.21824 * 15 14 13 34 34 H 1.08996 * 110.35733 * 277.51107 * 15 14 13 35 35 H 1.08997 * 109.47085 * 299.99814 * 19 17 16 36 36 H 1.08996 * 109.46965 * 59.99733 * 19 17 16 37 37 H 1.08999 * 112.85278 * 45.33281 * 20 19 17 38 38 H 1.09000 * 113.61509 * 334.56979 * 21 20 19 39 39 H 1.09002 * 113.61261 * 105.47182 * 21 20 19 40 40 H 1.09000 * 113.53775 * 270.81364 * 22 21 20 41 41 H 1.08999 * 113.74656 * 139.94302 * 22 21 20 42 42 H 1.09004 * 113.61762 * 220.08534 * 23 22 21 43 43 H 1.09009 * 113.61396 * 89.18518 * 23 22 21 44 44 H 1.09000 * 109.91071 * 242.20368 * 24 16 15 45 45 H 1.09005 * 109.91171 * 121.12987 * 24 16 15 46 46 H 1.09002 * 109.68091 * 109.69482 * 25 9 7 47 47 H 1.08995 * 109.70885 * 349.15604 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0573 -1.2212 -0.2643 9 7 1.3672 -2.3642 0.3335 10 6 1.8352 -3.6640 -0.1737 11 6 1.9870 -4.6239 1.0115 12 8 0.7656 -4.6493 1.7567 13 6 0.3897 -3.3949 2.3074 14 6 -0.8979 -3.5406 3.1486 15 6 -0.3269 -4.0150 4.5096 16 7 0.9498 -3.2846 4.6621 17 6 1.5677 -3.0088 5.8277 18 8 2.6168 -2.4002 5.8288 19 6 0.9547 -3.4561 7.1297 20 6 1.8499 -3.0200 8.2913 21 6 2.9781 -4.0161 8.6071 22 6 2.6994 -3.7365 10.0952 23 6 1.2700 -3.3552 9.6756 24 6 1.4346 -2.9091 3.3241 25 6 0.1850 -2.3532 1.2122 26 1 -0.4849 0.8401 0.0004 27 1 1.1075 -4.0653 -0.8790 28 1 2.7982 -3.5385 -0.6688 29 1 2.2094 -5.6253 0.6429 30 1 2.7992 -4.2838 1.6539 31 1 -1.4082 -2.5830 3.2514 32 1 -1.5621 -4.2910 2.7199 33 1 -1.0095 -3.7549 5.3185 34 1 -0.1502 -5.0905 4.4925 35 1 -0.0312 -3.0048 7.2411 36 1 0.8596 -4.5419 7.1325 37 1 2.1910 -1.9889 8.1989 38 1 2.7542 -5.0394 8.3057 39 1 3.9613 -3.6817 8.2758 40 1 3.2740 -2.9017 10.4963 41 1 2.7473 -4.6247 10.7251 42 1 0.8759 -2.4880 10.2056 43 1 0.5781 -4.1975 9.6668 44 1 2.3936 -3.3888 3.1287 45 1 1.5412 -1.8263 3.2583 46 1 -0.7051 -2.5994 0.6333 47 1 0.0698 -1.3666 1.6610 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972315744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:37 Heat of formation + Delta-G solvation = -31.923816 kcal Electronic energy + Delta-G solvation = -26923.129525 eV Core-core repulsion = 23300.314236 eV Total energy + Delta-G solvation = -3622.815290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.28763 -39.25863 -37.97762 -36.01594 -34.47214 -31.89549 -31.26346 -30.39213 -29.04182 -27.53918 -25.83443 -25.69118 -23.77567 -23.25940 -22.74563 -21.06530 -19.55389 -19.16115 -18.65112 -17.07608 -16.81372 -16.40427 -15.76303 -15.39306 -15.14105 -14.67287 -14.46548 -14.34298 -14.11947 -13.91401 -13.47861 -13.16700 -13.00838 -12.78332 -12.58064 -12.53838 -12.01702 -11.86064 -11.83053 -11.49062 -11.39879 -11.11347 -11.06715 -10.83723 -10.77562 -10.71337 -10.47685 -10.41208 -10.29067 -10.25096 -9.93566 -9.58428 -9.51545 -9.06214 -8.55695 -8.33694 -6.76624 -5.86050 -3.28562 2.88531 3.21093 3.35389 3.43772 3.45963 4.19758 4.39509 4.44579 4.51558 4.58847 4.72604 4.81334 4.86567 5.06846 5.21535 5.29917 5.35294 5.36716 5.41562 5.50578 5.55353 5.57685 5.62591 5.68544 5.74132 5.81336 5.81790 5.84737 5.98626 6.03728 6.08111 6.14989 6.19904 6.24607 6.31457 6.41606 6.49501 6.59497 6.62069 6.76380 7.03216 7.40508 7.71915 7.79457 7.88535 8.30845 8.42494 9.09639 9.72435 10.29138 11.22533 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.003970 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.514722 B = 7052.019760 C = 7917.584653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.251 4.251 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.110 3.890 11 C 0.044 3.956 12 O -0.376 6.376 13 C 0.085 3.915 14 C -0.118 4.118 15 C 0.103 3.897 16 N -0.618 5.618 17 C 0.523 3.477 18 O -0.542 6.542 19 C -0.126 4.126 20 C -0.094 4.094 21 C -0.134 4.134 22 C -0.143 4.143 23 C -0.138 4.138 24 C 0.097 3.903 25 C 0.164 3.836 26 H 0.254 0.746 27 H 0.027 0.973 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.033 0.967 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 -10.379 14.933 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.319 5.319 10 C -0.016 4.016 11 C -0.034 4.034 12 O -0.295 6.295 13 C 0.043 3.957 14 C -0.156 4.156 15 C -0.020 4.020 16 N -0.352 5.352 17 C 0.312 3.688 18 O -0.420 6.420 19 C -0.166 4.166 20 C -0.113 4.113 21 C -0.172 4.172 22 C -0.180 4.180 23 C -0.175 4.175 24 C -0.025 4.025 25 C 0.037 3.963 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.051 0.949 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.385 -10.038 15.007 18.108 hybrid contribution 0.505 1.033 -0.252 1.177 sum -0.880 -9.006 14.755 17.308 Atomic orbital electron populations 1.70013 1.05213 1.25547 1.54117 1.25017 0.95361 0.98403 1.00741 0.86220 0.79474 0.83788 0.77334 1.20154 1.21627 1.21428 1.19228 0.92484 0.84316 1.42035 0.91299 1.44125 1.32822 1.01385 1.53586 1.21585 0.98687 0.87522 0.93835 1.23104 0.86471 0.99814 0.94039 1.87656 1.41550 1.30398 1.69896 1.22686 0.92522 0.86664 0.93780 1.22701 0.96640 1.02987 0.93266 1.22416 0.84866 0.96498 0.98171 1.48786 1.23910 1.56196 1.06340 1.20328 0.84696 0.79496 0.84274 1.90695 1.23014 1.41263 1.86988 1.21665 1.00400 1.02451 0.92039 1.22337 0.95906 1.00865 0.92192 1.22958 0.99520 0.99050 0.95625 1.22822 0.97037 1.01381 0.96757 1.22978 0.96740 1.01381 0.96426 1.22471 0.98143 1.01553 0.80340 1.21241 0.89360 0.96750 0.88915 0.93563 0.95491 0.91878 0.89837 0.93482 0.89066 0.89074 0.90940 0.91176 0.89019 0.89191 0.88280 0.90481 0.91228 0.90306 0.91663 0.91506 0.90157 0.91409 0.90046 0.94901 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.64 11.13 55.49 0.62 -25.02 16 2 C 0.00 0.09 4.96 -17.43 -0.09 0.00 16 3 Si 0.90 21.80 29.58 -169.99 -5.03 16.77 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.25 -6.81 9.66 -15.06 -0.15 -6.96 16 8 H 0.07 1.85 7.88 -52.49 -0.41 1.43 16 9 N -0.60 -14.68 2.97 -172.17 -0.51 -15.19 16 10 C 0.11 2.28 6.71 -3.54 -0.02 2.26 16 11 C 0.04 0.78 6.75 37.30 0.25 1.03 16 12 O -0.38 -7.05 10.26 -35.23 -0.36 -7.41 16 13 C 0.09 1.60 0.81 -89.73 -0.07 1.53 16 14 C -0.12 -1.74 6.21 -24.88 -0.15 -1.89 16 15 C 0.10 1.32 6.72 -2.22 -0.01 1.31 16 16 N -0.62 -10.08 3.35 -170.36 -0.57 -10.65 16 17 C 0.52 8.51 7.85 -10.98 -0.09 8.43 16 18 O -0.54 -11.00 16.12 5.56 0.09 -10.91 16 19 C -0.13 -1.41 4.55 -27.89 -0.13 -1.54 16 20 C -0.09 -1.05 3.11 -89.81 -0.28 -1.33 16 21 C -0.13 -1.43 7.65 -25.83 -0.20 -1.63 16 22 C -0.14 -1.24 8.09 -25.83 -0.21 -1.45 16 23 C -0.14 -1.17 7.64 -25.92 -0.20 -1.37 16 24 C 0.10 1.89 5.95 -3.32 -0.02 1.87 16 25 C 0.16 3.77 3.98 -3.85 -0.02 3.76 16 26 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.87 6.22 -51.93 -0.32 0.55 16 31 H 0.09 1.33 8.01 -51.93 -0.42 0.92 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.07 0.72 7.51 -51.93 -0.39 0.33 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.87 7.87 -51.93 -0.41 0.47 16 36 H 0.09 0.86 7.87 -51.93 -0.41 0.45 16 37 H 0.10 1.30 7.73 -51.93 -0.40 0.90 16 38 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.59 8.10 -51.92 -0.42 0.17 16 44 H 0.07 1.41 6.00 -51.93 -0.31 1.10 16 45 H 0.08 1.84 7.61 -51.93 -0.40 1.44 16 46 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.10 2.48 5.92 -51.93 -0.31 2.17 16 LS Contribution 363.57 15.07 5.48 5.48 Total: -1.00 -31.52 363.57 -9.62 -41.15 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.96 Total: 1.75 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.38 Total: 4.04 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.46 Total: -50.86 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.27 Total: -18.32 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.52 -9.62 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972315744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.223 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds