Wall clock time and date at job start Tue Mar 31 2020 10:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00471 * 2 1 4 4 H 1.48501 * 109.47556 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47297 * 300.00186 * 3 2 1 6 6 H 1.48507 * 109.46773 * 59.99906 * 3 2 1 7 7 C 1.38819 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00024 * 163.61751 * 7 2 1 9 9 N 1.36939 * 119.99823 * 343.61604 * 7 2 1 10 10 C 1.47168 * 121.06605 * 153.87736 * 9 7 2 11 11 C 1.53271 * 108.55062 * 128.84436 * 10 9 7 12 12 O 1.43102 * 109.22538 * 52.89945 * 11 10 9 13 13 C 1.42061 * 114.33378 * 298.85168 * 12 11 10 14 14 C 1.54491 * 110.38556 * 182.83224 * 13 12 11 15 15 C 1.55026 * 101.53222 * 83.93445 * 14 13 12 16 16 N 1.47873 * 104.91357 * 36.46771 * 15 14 13 17 17 C 1.34783 * 125.87844 * 155.88658 * 16 15 14 18 18 O 1.21278 * 120.00363 * 179.97438 * 17 16 15 19 19 C 1.50702 * 119.99758 * 359.94563 * 17 16 15 20 20 C 1.52993 * 109.47056 * 179.97438 * 19 17 16 21 21 C 1.53784 * 113.61642 * 274.13356 * 20 19 17 22 22 C 1.53951 * 87.02262 * 220.04772 * 21 20 19 23 23 C 1.53779 * 87.11099 * 25.36233 * 22 21 20 24 24 C 1.47178 * 108.46147 * 335.83961 * 16 15 14 25 25 C 1.47306 * 121.06778 * 333.85938 * 9 7 2 26 26 H 0.96999 * 119.99669 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.62550 * 248.56893 * 10 9 7 28 28 H 1.09005 * 109.61964 * 9.12675 * 10 9 7 29 29 H 1.09002 * 109.51386 * 172.81890 * 11 10 9 30 30 H 1.08997 * 109.51734 * 292.92212 * 11 10 9 31 31 H 1.08999 * 111.01342 * 201.99566 * 14 13 12 32 32 H 1.08999 * 111.01489 * 325.83444 * 14 13 12 33 33 H 1.08997 * 110.35497 * 155.21824 * 15 14 13 34 34 H 1.08996 * 110.35733 * 277.51107 * 15 14 13 35 35 H 1.08997 * 109.47085 * 299.99814 * 19 17 16 36 36 H 1.08996 * 109.46965 * 59.99733 * 19 17 16 37 37 H 1.08999 * 112.85278 * 45.33281 * 20 19 17 38 38 H 1.09000 * 113.61509 * 334.56979 * 21 20 19 39 39 H 1.09002 * 113.61261 * 105.47182 * 21 20 19 40 40 H 1.09000 * 113.53775 * 270.81364 * 22 21 20 41 41 H 1.08999 * 113.74656 * 139.94302 * 22 21 20 42 42 H 1.09004 * 113.61762 * 220.08534 * 23 22 21 43 43 H 1.09009 * 113.61396 * 89.18518 * 23 22 21 44 44 H 1.09000 * 109.91071 * 242.20368 * 24 16 15 45 45 H 1.09005 * 109.91171 * 121.12987 * 24 16 15 46 46 H 1.09002 * 109.68091 * 109.69482 * 25 9 7 47 47 H 1.08995 * 109.70885 * 349.15604 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0573 -1.2212 -0.2643 9 7 1.3672 -2.3642 0.3335 10 6 1.8352 -3.6640 -0.1737 11 6 1.9870 -4.6239 1.0115 12 8 0.7656 -4.6493 1.7567 13 6 0.3897 -3.3949 2.3074 14 6 -0.8979 -3.5406 3.1486 15 6 -0.3269 -4.0150 4.5096 16 7 0.9498 -3.2846 4.6621 17 6 1.5677 -3.0088 5.8277 18 8 2.6168 -2.4002 5.8288 19 6 0.9547 -3.4561 7.1297 20 6 1.8499 -3.0200 8.2913 21 6 2.9781 -4.0161 8.6071 22 6 2.6994 -3.7365 10.0952 23 6 1.2700 -3.3552 9.6756 24 6 1.4346 -2.9091 3.3241 25 6 0.1850 -2.3532 1.2122 26 1 -0.4849 0.8401 0.0004 27 1 1.1075 -4.0653 -0.8790 28 1 2.7982 -3.5385 -0.6688 29 1 2.2094 -5.6253 0.6429 30 1 2.7992 -4.2838 1.6539 31 1 -1.4082 -2.5830 3.2514 32 1 -1.5621 -4.2910 2.7199 33 1 -1.0095 -3.7549 5.3185 34 1 -0.1502 -5.0905 4.4925 35 1 -0.0312 -3.0048 7.2411 36 1 0.8596 -4.5419 7.1325 37 1 2.1910 -1.9889 8.1989 38 1 2.7542 -5.0394 8.3057 39 1 3.9613 -3.6817 8.2758 40 1 3.2740 -2.9017 10.4963 41 1 2.7473 -4.6247 10.7251 42 1 0.8759 -2.4880 10.2056 43 1 0.5781 -4.1975 9.6668 44 1 2.3936 -3.3888 3.1287 45 1 1.5412 -1.8263 3.2583 46 1 -0.7051 -2.5994 0.6333 47 1 0.0698 -1.3666 1.6610 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972315744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:36 Heat of formation + Delta-G solvation = -51.643215 kcal Electronic energy + Delta-G solvation = -26923.984622 eV Core-core repulsion = 23300.314236 eV Total energy + Delta-G solvation = -3623.670387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64340 -40.45453 -39.07533 -37.45451 -36.29744 -33.39769 -33.13934 -31.44805 -30.39885 -29.20718 -27.52041 -26.43583 -25.20119 -24.82254 -23.83812 -22.64623 -20.65004 -20.23837 -20.09510 -18.90641 -18.17289 -17.82913 -17.02568 -16.65403 -16.59839 -16.16439 -15.90559 -15.68084 -15.37727 -15.20834 -15.18558 -14.77946 -14.50670 -14.15585 -13.68823 -13.46732 -13.28529 -13.24223 -13.04687 -12.92505 -12.79277 -12.69637 -12.52014 -12.34074 -12.28690 -12.18836 -12.14604 -11.80522 -11.49155 -11.23822 -11.18276 -11.05587 -10.87213 -10.76668 -10.53122 -9.69349 -8.76362 -7.95494 -5.40315 1.38684 1.42245 1.51091 1.63973 1.96546 2.42104 2.74922 3.18712 3.34519 3.50588 3.64545 3.74722 3.75912 3.82025 3.99348 4.01984 4.07121 4.20855 4.27262 4.37167 4.47194 4.51782 4.54085 4.56611 4.63323 4.70644 4.77025 4.81532 4.88775 4.90346 4.93409 5.01122 5.02520 5.04353 5.11698 5.16160 5.18774 5.20393 5.24958 5.41755 5.48251 5.56915 5.65208 6.24848 6.32949 6.56451 7.03353 7.16143 7.71389 8.24495 9.10596 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.003970 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.514722 B = 7052.019760 C = 7917.584653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.044 4.044 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.292 1.292 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.616 5.616 10 C 0.105 3.895 11 C 0.050 3.950 12 O -0.370 6.370 13 C 0.092 3.908 14 C -0.114 4.114 15 C 0.107 3.893 16 N -0.620 5.620 17 C 0.514 3.486 18 O -0.595 6.595 19 C -0.113 4.113 20 C -0.106 4.106 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.121 4.121 24 C 0.108 3.892 25 C 0.173 3.827 26 H 0.252 0.748 27 H 0.026 0.974 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.049 0.951 45 H 0.036 0.964 46 H 0.011 0.989 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 -12.749 16.993 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.240 4.240 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.219 1.219 7 C -0.392 4.392 8 H 0.084 0.916 9 N -0.340 5.340 10 C -0.020 4.020 11 C -0.027 4.027 12 O -0.289 6.289 13 C 0.050 3.950 14 C -0.152 4.152 15 C -0.014 4.014 16 N -0.354 5.354 17 C 0.305 3.695 18 O -0.476 6.476 19 C -0.152 4.152 20 C -0.125 4.125 21 C -0.179 4.179 22 C -0.176 4.176 23 C -0.158 4.158 24 C -0.016 4.016 25 C 0.047 3.953 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.143 0.857 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.109 0.891 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.122 0.878 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.029 0.971 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.690 -12.452 17.071 21.301 hybrid contribution 0.972 1.762 -0.967 2.232 sum -1.718 -10.690 16.104 19.406 Atomic orbital electron populations 1.70136 1.06271 1.25849 1.55334 1.25667 0.96119 1.01031 1.01193 0.85331 0.78631 0.80369 0.76938 1.19542 1.21214 1.21925 1.19483 0.92625 0.85700 1.41369 0.91642 1.44394 1.33049 1.02184 1.54394 1.21768 0.98669 0.86408 0.95188 1.23129 0.86029 1.01058 0.92512 1.87668 1.41774 1.29708 1.69749 1.22456 0.94629 0.85512 0.92399 1.22772 0.94844 1.03855 0.93737 1.22672 0.83512 0.97065 0.98110 1.48930 1.25150 1.56320 1.04967 1.21423 0.84088 0.78335 0.85613 1.90672 1.25584 1.43579 1.87769 1.21743 1.00902 1.04252 0.88300 1.22347 0.96727 0.99332 0.94064 1.23029 0.98049 0.99454 0.97384 1.22811 0.97268 1.01970 0.95509 1.22940 0.96762 1.02374 0.93756 1.22044 0.97865 0.98574 0.83072 1.21011 0.88176 0.96565 0.89521 0.93898 0.95581 0.91379 0.85738 0.94291 0.89342 0.86859 0.86682 0.89119 0.86303 0.86174 0.91374 0.89256 0.94016 0.90792 0.89926 0.90864 0.87828 0.93263 0.94516 0.97053 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.70 11.13 21.65 0.24 -54.46 16 2 C -0.04 -2.51 4.96 84.86 0.42 -2.09 16 3 Si 0.96 46.22 29.58 68.60 2.03 48.25 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 7 C -0.26 -14.68 9.66 84.03 0.81 -13.87 16 8 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 9 N -0.62 -31.33 2.97 -698.63 -2.07 -33.41 16 10 C 0.11 4.37 6.71 86.34 0.58 4.95 16 11 C 0.05 1.74 6.75 72.07 0.49 2.22 16 12 O -0.37 -13.27 10.26 -148.97 -1.53 -14.80 16 13 C 0.09 3.45 0.81 -10.22 -0.01 3.44 16 14 C -0.11 -3.12 6.21 31.79 0.20 -2.93 16 15 C 0.11 2.34 6.72 86.81 0.58 2.92 16 16 N -0.62 -19.51 3.35 -811.28 -2.71 -22.23 16 17 C 0.51 16.33 7.85 87.66 0.69 17.02 16 18 O -0.60 -25.08 16.12 -3.02 -0.05 -25.13 16 19 C -0.11 -2.18 4.55 29.85 0.14 -2.04 16 20 C -0.11 -2.19 3.11 -10.27 -0.03 -2.22 16 21 C -0.14 -2.85 7.65 31.18 0.24 -2.62 16 22 C -0.14 -2.09 8.09 31.18 0.25 -1.84 16 23 C -0.12 -1.65 7.64 31.12 0.24 -1.41 16 24 C 0.11 4.34 5.95 86.48 0.51 4.86 16 25 C 0.17 8.30 3.98 86.07 0.34 8.64 16 26 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 28 H 0.07 2.71 7.96 -2.38 -0.02 2.69 16 29 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 30 H 0.04 1.43 6.22 -2.39 -0.01 1.42 16 31 H 0.09 2.48 8.01 -2.39 -0.02 2.46 16 32 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.12 1.62 7.51 -2.39 -0.02 1.60 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.12 1.70 7.87 -2.39 -0.02 1.68 16 36 H 0.12 1.67 7.87 -2.39 -0.02 1.65 16 37 H 0.07 1.83 7.73 -2.39 -0.02 1.81 16 38 H 0.09 1.55 7.92 -2.39 -0.02 1.54 16 39 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.10 0.98 8.10 -2.38 -0.02 0.96 16 44 H 0.05 2.12 6.00 -2.39 -0.01 2.11 16 45 H 0.04 1.77 7.61 -2.38 -0.02 1.76 16 46 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 3.42 5.92 -2.39 -0.01 3.40 16 Total: -1.00 -73.76 363.57 2.29 -71.46 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.94 Total: 15.27 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 5.45 Total: 15.04 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -4.55 Total: -110.09 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -1.58 Total: -39.93 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -73.76 2.29 -71.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972315744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.819 kcal (2) G-P(sol) polarization free energy of solvation -73.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds