Wall clock time and date at job start Tue Mar 31 2020 10:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99590 * 2 1 4 4 H 1.48496 * 109.47440 * 240.00371 * 3 2 1 5 5 H 1.48504 * 109.47243 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46890 * 120.00428 * 3 2 1 7 7 C 1.38803 * 120.00481 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00065 * 163.21786 * 7 2 1 9 9 N 1.36937 * 119.99778 * 342.95186 * 7 2 1 10 10 C 1.47154 * 120.98179 * 154.03004 * 9 7 2 11 11 C 1.53292 * 108.38799 * 129.43943 * 10 9 7 12 12 O 1.42970 * 109.22067 * 52.29889 * 11 10 9 13 13 C 1.42955 * 114.16711 * 297.42190 * 12 11 10 14 14 H 1.09001 * 109.51808 * 302.60586 * 13 12 11 15 15 C 1.53005 * 109.51353 * 182.50257 * 13 12 11 16 16 N 1.46504 * 109.46525 * 65.00183 * 15 13 12 17 17 C 1.34778 * 119.99546 * 180.02562 * 16 15 13 18 18 O 1.21286 * 120.00130 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99993 * 179.97438 * 17 16 15 20 20 C 1.53953 * 113.58276 * 279.24494 * 19 17 16 21 21 C 1.53070 * 86.72551 * 220.69043 * 20 19 17 22 22 C 1.52902 * 121.17406 * 150.59185 * 21 20 19 23 23 C 1.53956 * 86.78535 * 100.74668 * 22 21 20 24 24 C 1.52909 * 121.06348 * 259.12550 * 21 20 19 25 25 C 1.52908 * 88.06925 * 24.83152 * 21 20 19 26 26 C 1.47146 * 120.98240 * 333.74611 * 9 7 2 27 27 H 0.97000 * 120.00485 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.67819 * 249.16324 * 10 9 7 29 29 H 1.09000 * 109.68216 * 9.67910 * 10 9 7 30 30 H 1.08998 * 109.51709 * 172.22141 * 11 10 9 31 31 H 1.08997 * 109.51134 * 292.37811 * 11 10 9 32 32 H 1.08994 * 109.46977 * 184.99907 * 15 13 12 33 33 H 1.08995 * 109.46884 * 305.00632 * 15 13 12 34 34 H 0.96995 * 120.00360 * 359.97438 * 16 15 13 35 35 H 1.09000 * 112.82023 * 50.33112 * 19 17 16 36 36 H 1.08999 * 113.65979 * 335.13908 * 20 19 17 37 37 H 1.08996 * 113.65845 * 106.18807 * 20 19 17 38 38 H 1.09001 * 113.66017 * 215.21680 * 22 21 20 39 39 H 1.09003 * 113.66662 * 346.27012 * 22 21 20 40 40 H 1.09003 * 113.57657 * 270.13278 * 23 22 21 41 41 H 1.08999 * 113.65022 * 139.34215 * 23 22 21 42 42 H 1.09001 * 113.66530 * 13.62950 * 24 21 20 43 43 H 1.08995 * 113.66550 * 144.68899 * 24 21 20 44 44 H 1.08995 * 113.66466 * 220.69262 * 25 21 20 45 45 H 1.09003 * 113.65825 * 89.63907 * 25 21 20 46 46 H 1.09002 * 109.68387 * 350.27974 * 26 9 7 47 47 H 1.09004 * 109.68636 * 110.83883 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6967 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0558 -1.2217 -0.2706 9 7 1.3708 -2.3620 0.3466 10 6 1.8375 -3.6640 -0.1560 11 6 1.9846 -4.6177 1.0350 12 8 0.7672 -4.6258 1.7846 13 6 0.4240 -3.3617 2.3572 14 1 1.2356 -3.0206 3.0000 15 6 -0.8560 -3.5053 3.1831 16 7 -0.6049 -4.3911 4.3227 17 6 -1.5960 -4.6657 5.1938 18 8 -2.6955 -4.1791 5.0345 19 6 -1.3381 -5.5773 6.3657 20 6 -1.3918 -7.0732 6.0059 21 6 -2.1298 -7.2756 7.3316 22 6 -3.1440 -8.4061 7.5082 23 6 -2.0300 -9.1740 8.2428 24 6 -1.4017 -7.8064 8.5669 25 6 -2.5791 -5.8166 7.2447 26 6 0.2004 -2.3441 1.2383 27 1 -0.4851 0.8400 0.0004 28 1 1.1107 -4.0670 -0.8615 29 1 2.8010 -3.5424 -0.6509 30 1 2.1954 -5.6236 0.6722 31 1 2.8023 -4.2809 1.6722 32 1 -1.1660 -2.5254 3.5459 33 1 -1.6443 -3.9285 2.5607 34 1 0.2743 -4.7805 4.4498 35 1 -0.4501 -5.2967 6.9322 36 1 -2.0008 -7.2905 5.1285 37 1 -0.4124 -7.5504 5.9722 38 1 -3.9871 -8.1417 8.1464 39 1 -3.4500 -8.8699 6.5704 40 1 -1.4178 -9.7900 7.5841 41 1 -2.3784 -9.7136 9.1234 42 1 -0.3157 -7.7912 8.4750 43 1 -1.7550 -7.3735 9.5027 44 1 -2.5470 -5.2914 8.1992 45 1 -3.5225 -5.6802 6.7160 46 1 0.0807 -1.3492 1.6671 47 1 -0.6940 -2.6121 0.6757 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035474021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:33 Heat of formation + Delta-G solvation = -22.225041 kcal Electronic energy + Delta-G solvation = -25760.850238 eV Core-core repulsion = 22138.455519 eV Total energy + Delta-G solvation = -3622.394719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.97242 -39.12925 -38.32006 -34.93640 -34.64067 -34.29205 -31.38223 -30.91057 -27.58827 -26.43402 -26.02107 -25.89242 -24.66931 -23.30518 -22.15817 -21.39748 -20.12349 -19.38989 -18.18857 -17.23987 -16.94647 -16.05624 -15.80407 -15.74860 -15.42053 -15.07454 -14.62966 -14.42789 -14.31125 -13.89956 -13.31891 -13.28440 -13.03456 -12.90364 -12.82468 -12.61866 -12.42409 -12.30296 -11.96459 -11.54827 -11.25367 -11.14242 -11.07215 -10.84808 -10.75422 -10.51271 -10.43251 -10.33084 -10.31025 -10.21150 -10.03690 -9.68480 -9.52000 -9.07931 -8.81882 -8.56776 -6.78197 -5.86651 -3.30562 2.78185 3.32594 3.37687 3.40119 3.40600 4.12626 4.20465 4.26656 4.34961 4.42013 4.51198 4.52258 4.58214 5.10928 5.15405 5.17544 5.20147 5.34126 5.38832 5.45814 5.51919 5.54791 5.61788 5.62864 5.64188 5.70980 5.72963 5.80966 5.84557 5.91295 6.02238 6.07550 6.11273 6.17535 6.24358 6.28560 6.36209 6.49369 6.69990 6.76236 7.04420 7.45507 7.68087 7.71874 7.82611 8.30721 8.41763 9.08344 9.71479 10.28435 11.21531 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.026356 B = 0.002663 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.104003 B =10512.352788 C =11075.185778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.068 0.932 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.390 6.390 13 C 0.056 3.944 14 H 0.055 0.945 15 C 0.131 3.869 16 N -0.719 5.719 17 C 0.518 3.482 18 O -0.545 6.545 19 C -0.134 4.134 20 C -0.096 4.096 21 C -0.108 4.108 22 C -0.127 4.127 23 C -0.140 4.140 24 C -0.117 4.117 25 C -0.102 4.102 26 C 0.152 3.848 27 H 0.257 0.743 28 H 0.027 0.973 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.401 0.599 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 -16.142 15.555 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.318 5.318 10 C -0.017 4.017 11 C -0.028 4.028 12 O -0.309 6.309 13 C -0.003 4.003 14 H 0.073 0.927 15 C 0.008 3.992 16 N -0.370 5.370 17 C 0.304 3.696 18 O -0.423 6.423 19 C -0.156 4.156 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.165 4.165 23 C -0.178 4.178 24 C -0.154 4.154 25 C -0.140 4.140 26 C 0.025 3.975 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.235 0.765 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.962 -15.766 15.406 22.131 hybrid contribution 1.131 1.011 -0.155 1.525 sum -0.831 -14.755 15.252 21.237 Atomic orbital electron populations 1.70009 1.05252 1.25924 1.53352 1.25058 0.95358 0.98511 1.00650 0.86328 0.78897 0.83134 0.78161 1.20787 1.21484 1.20975 1.19135 0.92616 0.84518 1.42442 0.91404 1.44025 1.33855 1.01315 1.52627 1.21601 0.98598 0.87545 0.93992 1.23003 0.86181 0.99596 0.94022 1.87788 1.42032 1.31473 1.69639 1.23054 0.95028 0.86367 0.95890 0.92724 1.21398 0.97397 0.94361 0.86091 1.46030 1.14152 1.49661 1.27113 1.20463 0.84425 0.81230 0.83499 1.90687 1.23732 1.52566 1.75275 1.22722 1.01530 0.95237 0.96076 1.22610 1.00914 0.93106 0.96714 1.22462 0.97800 0.94742 0.95802 1.22743 0.96631 0.96328 1.00762 1.22827 0.98284 0.96280 1.00387 1.22663 0.99714 0.96174 0.96864 1.22687 0.97659 0.94426 0.99203 1.21221 0.89547 0.97646 0.89047 0.93316 0.95549 0.91979 0.90030 0.93900 0.90015 0.90838 0.76520 0.87196 0.89256 0.90553 0.89938 0.91354 0.90249 0.91627 0.91307 0.89822 0.91085 0.88492 0.88628 0.95111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.91 11.15 55.49 0.62 -25.29 16 2 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 3 Si 0.91 21.37 29.59 -169.99 -5.03 16.34 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.97 9.65 -15.06 -0.15 -7.12 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.81 3.05 -172.08 -0.53 -15.33 16 10 C 0.11 2.26 6.74 -3.53 -0.02 2.23 16 11 C 0.05 0.87 6.99 37.31 0.26 1.13 16 12 O -0.39 -7.22 10.33 -35.23 -0.36 -7.58 16 13 C 0.06 1.06 2.80 -26.79 -0.07 0.99 16 14 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 15 C 0.13 2.26 5.34 -4.04 -0.02 2.24 16 16 N -0.72 -10.31 5.50 -60.29 -0.33 -10.64 16 17 C 0.52 7.55 7.35 -10.98 -0.08 7.47 16 18 O -0.55 -10.12 15.90 5.55 0.09 -10.03 16 19 C -0.13 -1.41 4.14 -90.79 -0.38 -1.79 16 20 C -0.10 -0.88 7.40 -26.20 -0.19 -1.08 16 21 C -0.11 -0.91 1.11 -154.63 -0.17 -1.08 16 22 C -0.13 -0.99 7.84 -26.28 -0.21 -1.19 16 23 C -0.14 -0.94 8.08 -25.74 -0.21 -1.15 16 24 C -0.12 -0.82 7.84 -26.28 -0.21 -1.02 16 25 C -0.10 -1.04 7.16 -26.28 -0.19 -1.23 16 26 C 0.15 3.59 4.71 -3.75 -0.02 3.57 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.40 4.91 8.47 -40.82 -0.35 4.56 16 35 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 1.18 7.44 -51.93 -0.39 0.79 16 46 H 0.10 2.48 6.15 -51.93 -0.32 2.17 16 47 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -31.30 373.52 -9.85 -41.16 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -8.20 Total: 3.77 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.74 Total: 1.98 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.24 Total: -51.26 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.28 Total: -17.61 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.30 -9.85 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035474021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.931 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds