Wall clock time and date at job start Tue Mar 31 2020 10:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00164 * 2 1 4 4 H 1.48496 * 109.46872 * 270.00143 * 3 2 1 5 5 H 1.48500 * 109.46904 * 29.99934 * 3 2 1 6 6 H 1.48496 * 109.47110 * 149.99670 * 3 2 1 7 7 C 1.38808 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00408 * 162.50716 * 7 2 1 9 9 N 1.36942 * 119.99991 * 342.22560 * 7 2 1 10 10 C 1.46886 * 120.46639 * 331.57165 * 9 7 2 11 11 C 1.52854 * 109.01644 * 235.48501 * 10 9 7 12 12 C 1.52669 * 109.17751 * 307.81614 * 11 10 9 13 13 C 1.53484 * 113.62695 * 188.98920 * 12 11 10 14 14 N 1.47671 * 85.98979 * 137.70881 * 13 12 11 15 15 C 1.34772 * 134.46051 * 155.70199 * 14 13 12 16 16 O 1.21278 * 120.00398 * 179.97438 * 15 14 13 17 17 C 1.50699 * 119.99811 * 359.97384 * 15 14 13 18 18 C 1.52997 * 109.47509 * 179.97438 * 17 15 14 19 19 O 1.42905 * 112.84640 * 55.33275 * 18 17 15 20 20 C 1.53782 * 113.61724 * 284.14271 * 18 17 15 21 21 C 1.53961 * 87.01614 * 220.04416 * 20 18 17 22 22 C 1.53773 * 87.11224 * 25.35888 * 21 20 18 23 23 C 1.47671 * 91.08601 * 335.68293 * 14 13 12 24 24 C 1.52678 * 113.18563 * 57.46055 * 12 11 10 25 25 C 1.46878 * 120.46612 * 151.83908 * 9 7 2 26 26 H 0.97006 * 119.99997 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.58454 * 355.30644 * 10 9 7 28 28 H 1.08997 * 109.59165 * 115.74074 * 10 9 7 29 29 H 1.09002 * 109.61191 * 187.83719 * 11 10 9 30 30 H 1.09006 * 109.44979 * 67.69241 * 11 10 9 31 31 H 1.08995 * 113.79321 * 251.97690 * 13 12 11 32 32 H 1.09006 * 113.78568 * 23.44413 * 13 12 11 33 33 H 1.09000 * 109.47519 * 300.00195 * 17 15 14 34 34 H 1.09006 * 109.47175 * 60.00013 * 17 15 14 35 35 H 0.96697 * 113.99965 * 309.66918 * 19 18 17 36 36 H 1.09005 * 113.61031 * 334.55893 * 20 18 17 37 37 H 1.08995 * 113.61777 * 105.46539 * 20 18 17 38 38 H 1.08994 * 113.53257 * 270.80381 * 21 20 18 39 39 H 1.09003 * 113.73952 * 139.94174 * 21 20 18 40 40 H 1.08997 * 113.61859 * 220.09098 * 22 21 20 41 41 H 1.09006 * 113.69064 * 89.19559 * 22 21 20 42 42 H 1.09000 * 113.79635 * 270.05104 * 23 14 13 43 43 H 1.09001 * 113.79504 * 138.57588 * 23 14 13 44 44 H 1.08994 * 109.53131 * 182.52489 * 24 12 11 45 45 H 1.08993 * 109.58843 * 62.33420 * 24 12 11 46 46 H 1.09003 * 109.58990 * 244.26002 * 25 9 7 47 47 H 1.09003 * 109.58843 * 4.69859 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0527 -1.2239 -0.2806 9 7 1.3745 -2.3596 0.3631 10 6 0.2470 -2.3268 1.3039 11 6 0.5494 -3.2594 2.4766 12 6 0.9354 -4.6345 1.9372 13 6 1.0489 -5.7120 3.0243 14 7 0.3481 -6.5981 2.0733 15 6 0.2840 -7.9329 1.8986 16 8 -0.3945 -8.3958 1.0063 17 6 1.0555 -8.8503 2.8119 18 6 0.8106 -10.3035 2.4008 19 8 1.1219 -10.5518 1.0283 20 6 -0.5658 -10.8408 2.8271 21 6 0.1465 -12.1608 3.1744 22 6 1.4256 -11.3293 3.3673 23 6 -0.2547 -5.4356 1.3908 24 6 2.1312 -4.5942 0.9888 25 6 1.8144 -3.6520 -0.1788 26 1 -0.4850 0.8401 0.0004 27 1 0.1088 -1.3107 1.6734 28 1 -0.6597 -2.6609 0.7995 29 1 -0.3339 -3.3507 3.1087 30 1 1.3749 -2.8522 3.0605 31 1 2.0737 -6.0169 3.2359 32 1 0.4747 -5.4909 3.9241 33 1 2.1196 -8.6259 2.7382 34 1 0.7235 -8.7031 3.8397 35 1 0.7187 -9.9236 0.4137 36 1 -0.9847 -10.3295 3.6938 37 1 -1.2742 -10.9295 2.0034 38 1 0.2012 -12.8587 2.3390 39 1 -0.2143 -12.6260 4.0917 40 1 2.3227 -11.8117 2.9791 41 1 1.5535 -10.9513 4.3817 42 1 -1.2162 -5.1323 1.8052 43 1 -0.2658 -5.5207 0.3042 44 1 2.3266 -5.5958 0.6060 45 1 3.0090 -4.2304 1.5227 46 1 1.0205 -4.0814 -0.7898 47 1 2.7085 -3.5086 -0.7855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050514940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:31 Heat of formation + Delta-G solvation = -10.554600 kcal Electronic energy + Delta-G solvation = -26445.200371 eV Core-core repulsion = 22823.311720 eV Total energy + Delta-G solvation = -3621.888651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.89966 -39.88061 -37.94097 -35.90370 -34.53901 -32.57951 -31.14759 -30.35552 -29.60561 -26.98374 -26.26894 -25.92589 -24.23790 -23.23559 -22.40260 -20.93065 -19.79380 -19.19138 -18.09194 -17.16387 -16.67143 -16.35789 -15.96290 -15.87395 -15.17530 -14.91709 -14.82276 -14.48783 -13.92014 -13.69641 -13.61615 -13.28423 -12.99897 -12.82615 -12.68854 -12.47566 -12.24466 -11.94125 -11.76194 -11.66758 -11.47162 -11.38217 -11.09953 -11.06108 -10.74472 -10.62807 -10.54689 -10.33627 -10.19981 -9.92480 -9.82374 -9.79715 -9.67788 -9.35727 -8.64615 -8.49055 -6.70071 -5.82960 -3.25391 2.54661 2.80806 3.34752 3.42271 3.44202 3.92967 4.17009 4.36460 4.46372 4.49507 4.54787 4.60755 4.78018 5.00954 5.07807 5.15688 5.25310 5.34434 5.39798 5.42233 5.45507 5.46540 5.51996 5.53231 5.59644 5.69424 5.77795 5.87183 5.90030 6.01355 6.03614 6.05899 6.15289 6.21875 6.39648 6.51754 6.55413 6.61582 6.76596 6.90984 7.28009 7.57626 7.59870 7.76382 7.81051 8.11001 8.41966 9.17767 9.81196 10.37283 11.25389 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.041912 B = 0.002736 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.913375 B =10230.374883 C =10294.787564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.171 3.829 11 C -0.127 4.127 12 C -0.074 4.074 13 C 0.100 3.900 14 N -0.636 5.636 15 C 0.535 3.465 16 O -0.552 6.552 17 C -0.158 4.158 18 C 0.129 3.871 19 O -0.549 6.549 20 C -0.161 4.161 21 C -0.135 4.135 22 C -0.128 4.128 23 C 0.117 3.883 24 C -0.108 4.108 25 C 0.147 3.853 26 H 0.254 0.746 27 H 0.090 0.910 28 H 0.018 0.982 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.391 0.609 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.018 0.982 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -17.515 10.345 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.045 3.955 11 C -0.167 4.167 12 C -0.075 4.075 13 C -0.022 4.022 14 N -0.370 5.370 15 C 0.325 3.675 16 O -0.432 6.432 17 C -0.198 4.198 18 C 0.087 3.913 19 O -0.361 6.361 20 C -0.199 4.199 21 C -0.172 4.172 22 C -0.166 4.166 23 C -0.005 4.005 24 C -0.147 4.147 25 C 0.020 3.980 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.245 0.755 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.036 0.964 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.176 -18.294 10.067 20.914 hybrid contribution 0.023 1.421 -0.084 1.423 sum 1.200 -16.873 9.983 19.642 Atomic orbital electron populations 1.70032 1.05276 1.25550 1.53715 1.25031 0.95244 0.98426 1.00857 0.86333 0.79194 0.83711 0.77757 1.21392 1.21561 1.20499 1.19161 0.92770 0.84967 1.41404 0.91779 1.44001 1.37169 1.01370 1.48734 1.20675 0.88824 0.98700 0.87331 1.22063 1.00199 0.94149 1.00273 1.21983 0.96018 0.94511 0.94951 1.23513 0.97233 0.87439 0.94034 1.50164 1.48769 1.03687 1.34422 1.20285 0.81147 0.81053 0.84972 1.90564 1.43062 1.74656 1.34916 1.22288 1.02151 0.94956 1.00377 1.21793 0.95482 0.90374 0.83641 1.86315 1.75915 1.58872 1.14963 1.23592 0.97455 0.97027 1.01792 1.22773 0.96230 0.96610 1.01613 1.23053 0.98701 0.96553 0.98249 1.23304 0.97111 0.80724 0.99340 1.21769 0.95776 0.99355 0.97834 1.20883 0.97633 0.86887 0.92586 0.93609 0.89218 0.96408 0.92832 0.91925 0.90274 0.89683 0.88270 0.88112 0.75510 0.89978 0.90537 0.89844 0.91453 0.90480 0.88957 0.89840 0.89885 0.93005 0.91695 0.96383 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 11.22 55.49 0.62 -24.78 16 2 C 0.00 0.08 4.89 -17.43 -0.09 0.00 16 3 Si 0.90 21.09 29.59 -169.99 -5.03 16.07 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.70 9.56 -15.06 -0.14 -6.85 16 8 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.59 -13.99 2.97 -172.51 -0.51 -14.51 16 10 C 0.17 3.75 5.21 -3.91 -0.02 3.73 16 11 C -0.13 -2.10 5.24 -26.98 -0.14 -2.24 16 12 C -0.07 -1.08 0.77 -154.42 -0.12 -1.20 16 13 C 0.10 1.14 7.74 -3.16 -0.02 1.11 16 14 N -0.64 -8.44 3.44 -180.19 -0.62 -9.06 16 15 C 0.53 7.26 7.79 -10.99 -0.09 7.18 16 16 O -0.55 -9.09 14.35 -13.60 -0.20 -9.29 16 17 C -0.16 -1.61 5.08 -27.89 -0.14 -1.75 16 18 C 0.13 1.42 1.09 -89.81 -0.10 1.32 16 19 O -0.55 -7.47 13.40 -54.39 -0.73 -8.19 16 20 C -0.16 -1.67 7.08 -25.82 -0.18 -1.85 16 21 C -0.13 -1.20 8.02 -25.83 -0.21 -1.40 16 22 C -0.13 -1.12 7.47 -25.93 -0.19 -1.31 16 23 C 0.12 1.74 7.62 -3.14 -0.02 1.71 16 24 C -0.11 -1.73 5.22 -26.72 -0.14 -1.87 16 25 C 0.15 2.93 6.38 -3.66 -0.02 2.91 16 26 H 0.25 6.93 8.31 -40.82 -0.34 6.60 16 27 H 0.09 2.25 5.98 -51.93 -0.31 1.94 16 28 H 0.02 0.41 8.07 -51.93 -0.42 -0.01 16 29 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.39 5.50 6.33 45.56 0.29 5.78 16 36 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 42 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 43 H 0.08 1.38 7.41 -51.93 -0.38 0.99 16 44 H 0.05 0.78 8.01 -51.93 -0.42 0.36 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.02 0.38 7.49 -51.93 -0.39 -0.01 16 47 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -30.12 366.48 -10.06 -40.18 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.49 Total: 4.58 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.63 Total: -0.51 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.51 Total: -48.35 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.92 Total: -17.48 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.12 -10.06 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050514940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.625 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds