Wall clock time and date at job start Tue Mar 31 2020 10:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00164 * 2 1 4 4 H 1.48496 * 109.46872 * 270.00143 * 3 2 1 5 5 H 1.48500 * 109.46904 * 29.99934 * 3 2 1 6 6 H 1.48496 * 109.47110 * 149.99670 * 3 2 1 7 7 C 1.38808 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00408 * 162.50716 * 7 2 1 9 9 N 1.36942 * 119.99991 * 342.22560 * 7 2 1 10 10 C 1.46886 * 120.46639 * 331.57165 * 9 7 2 11 11 C 1.52854 * 109.01644 * 235.48501 * 10 9 7 12 12 C 1.52669 * 109.17751 * 307.81614 * 11 10 9 13 13 C 1.53484 * 113.62695 * 188.98920 * 12 11 10 14 14 N 1.47671 * 85.98979 * 137.70881 * 13 12 11 15 15 C 1.34772 * 134.46051 * 155.70199 * 14 13 12 16 16 O 1.21278 * 120.00398 * 179.97438 * 15 14 13 17 17 C 1.50699 * 119.99811 * 359.97384 * 15 14 13 18 18 C 1.52997 * 109.47509 * 179.97438 * 17 15 14 19 19 O 1.42905 * 112.84640 * 55.33275 * 18 17 15 20 20 C 1.53782 * 113.61724 * 284.14271 * 18 17 15 21 21 C 1.53961 * 87.01614 * 220.04416 * 20 18 17 22 22 C 1.53773 * 87.11224 * 25.35888 * 21 20 18 23 23 C 1.47671 * 91.08601 * 335.68293 * 14 13 12 24 24 C 1.52678 * 113.18563 * 57.46055 * 12 11 10 25 25 C 1.46878 * 120.46612 * 151.83908 * 9 7 2 26 26 H 0.97006 * 119.99997 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.58454 * 355.30644 * 10 9 7 28 28 H 1.08997 * 109.59165 * 115.74074 * 10 9 7 29 29 H 1.09002 * 109.61191 * 187.83719 * 11 10 9 30 30 H 1.09006 * 109.44979 * 67.69241 * 11 10 9 31 31 H 1.08995 * 113.79321 * 251.97690 * 13 12 11 32 32 H 1.09006 * 113.78568 * 23.44413 * 13 12 11 33 33 H 1.09000 * 109.47519 * 300.00195 * 17 15 14 34 34 H 1.09006 * 109.47175 * 60.00013 * 17 15 14 35 35 H 0.96697 * 113.99965 * 309.66918 * 19 18 17 36 36 H 1.09005 * 113.61031 * 334.55893 * 20 18 17 37 37 H 1.08995 * 113.61777 * 105.46539 * 20 18 17 38 38 H 1.08994 * 113.53257 * 270.80381 * 21 20 18 39 39 H 1.09003 * 113.73952 * 139.94174 * 21 20 18 40 40 H 1.08997 * 113.61859 * 220.09098 * 22 21 20 41 41 H 1.09006 * 113.69064 * 89.19559 * 22 21 20 42 42 H 1.09000 * 113.79635 * 270.05104 * 23 14 13 43 43 H 1.09001 * 113.79504 * 138.57588 * 23 14 13 44 44 H 1.08994 * 109.53131 * 182.52489 * 24 12 11 45 45 H 1.08993 * 109.58843 * 62.33420 * 24 12 11 46 46 H 1.09003 * 109.58990 * 244.26002 * 25 9 7 47 47 H 1.09003 * 109.58843 * 4.69859 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0527 -1.2239 -0.2806 9 7 1.3745 -2.3596 0.3631 10 6 0.2470 -2.3268 1.3039 11 6 0.5494 -3.2594 2.4766 12 6 0.9354 -4.6345 1.9372 13 6 1.0489 -5.7120 3.0243 14 7 0.3481 -6.5981 2.0733 15 6 0.2840 -7.9329 1.8986 16 8 -0.3945 -8.3958 1.0063 17 6 1.0555 -8.8503 2.8119 18 6 0.8106 -10.3035 2.4008 19 8 1.1219 -10.5518 1.0283 20 6 -0.5658 -10.8408 2.8271 21 6 0.1465 -12.1608 3.1744 22 6 1.4256 -11.3293 3.3673 23 6 -0.2547 -5.4356 1.3908 24 6 2.1312 -4.5942 0.9888 25 6 1.8144 -3.6520 -0.1788 26 1 -0.4850 0.8401 0.0004 27 1 0.1088 -1.3107 1.6734 28 1 -0.6597 -2.6609 0.7995 29 1 -0.3339 -3.3507 3.1087 30 1 1.3749 -2.8522 3.0605 31 1 2.0737 -6.0169 3.2359 32 1 0.4747 -5.4909 3.9241 33 1 2.1196 -8.6259 2.7382 34 1 0.7235 -8.7031 3.8397 35 1 0.7187 -9.9236 0.4137 36 1 -0.9847 -10.3295 3.6938 37 1 -1.2742 -10.9295 2.0034 38 1 0.2012 -12.8587 2.3390 39 1 -0.2143 -12.6260 4.0917 40 1 2.3227 -11.8117 2.9791 41 1 1.5535 -10.9513 4.3817 42 1 -1.2162 -5.1323 1.8052 43 1 -0.2658 -5.5207 0.3042 44 1 2.3266 -5.5958 0.6060 45 1 3.0090 -4.2304 1.5227 46 1 1.0205 -4.0814 -0.7898 47 1 2.7085 -3.5086 -0.7855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050514940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:30 Heat of formation + Delta-G solvation = -28.870331 kcal Electronic energy + Delta-G solvation = -26445.994600 eV Core-core repulsion = 22823.311720 eV Total energy + Delta-G solvation = -3622.682881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.96796 -40.82579 -39.03343 -37.47237 -35.45697 -34.27196 -32.49170 -31.69339 -31.01504 -28.35696 -27.31479 -26.64421 -25.91541 -24.15021 -23.89145 -22.51776 -20.57560 -20.31065 -19.50524 -18.43846 -17.93582 -17.42310 -17.00578 -16.91592 -16.74287 -16.08912 -15.73805 -15.63490 -15.49669 -15.22786 -14.92413 -14.58556 -14.16362 -13.93839 -13.74723 -13.66855 -13.28217 -13.22162 -13.04029 -12.92106 -12.88718 -12.55057 -12.52750 -12.27693 -12.14224 -12.01431 -11.80940 -11.77334 -11.49817 -11.31905 -11.22753 -11.19285 -10.62658 -10.61025 -10.46236 -9.70806 -8.63889 -7.85701 -5.30953 1.47762 1.49507 1.55053 1.58951 1.80277 2.52949 3.13095 3.25019 3.29094 3.45189 3.63016 3.69881 3.72650 3.84748 3.88447 3.98854 4.11060 4.24505 4.39833 4.43817 4.48855 4.53052 4.61053 4.62039 4.70822 4.73308 4.78552 4.81384 4.83771 4.87073 4.93306 5.03532 5.05223 5.13251 5.15272 5.20553 5.31334 5.36433 5.37543 5.44191 5.55652 5.67638 5.82082 6.42058 6.59843 6.79711 7.09621 7.18070 7.89641 8.40068 9.19985 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.041912 B = 0.002736 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.913375 B =10230.374883 C =10294.787564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.964 3.036 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.608 5.608 10 C 0.175 3.825 11 C -0.111 4.111 12 C -0.077 4.077 13 C 0.120 3.880 14 N -0.636 5.636 15 C 0.528 3.472 16 O -0.590 6.590 17 C -0.146 4.146 18 C 0.110 3.890 19 O -0.568 6.568 20 C -0.165 4.165 21 C -0.133 4.133 22 C -0.117 4.117 23 C 0.111 3.889 24 C -0.093 4.093 25 C 0.142 3.858 26 H 0.249 0.751 27 H 0.054 0.946 28 H -0.007 1.007 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.133 0.867 35 H 0.384 0.616 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.003 0.997 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.920 -18.749 13.500 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.150 4.150 12 C -0.078 4.078 13 C -0.001 4.001 14 N -0.369 5.369 15 C 0.320 3.680 16 O -0.473 6.473 17 C -0.186 4.186 18 C 0.069 3.931 19 O -0.379 6.379 20 C -0.202 4.202 21 C -0.170 4.170 22 C -0.154 4.154 23 C -0.012 4.012 24 C -0.132 4.132 25 C 0.017 3.983 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.011 0.989 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.151 0.849 35 H 0.237 0.763 36 H 0.117 0.883 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.142 0.858 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.021 0.979 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.803 -19.556 13.249 23.787 hybrid contribution -0.523 1.776 -1.177 2.194 sum 2.280 -17.780 12.072 21.612 Atomic orbital electron populations 1.70188 1.06655 1.25812 1.55370 1.25756 0.95959 1.01402 1.01363 0.85334 0.78242 0.79788 0.77418 1.21568 1.21836 1.19361 1.19483 0.92972 0.86215 1.40515 0.91820 1.44273 1.37359 1.01879 1.49601 1.20515 0.87609 0.98155 0.88768 1.21823 1.01469 0.93777 0.97951 1.21890 0.95145 0.94376 0.96389 1.23559 0.99155 0.84291 0.93113 1.50195 1.48616 1.03519 1.34613 1.20988 0.80880 0.81219 0.84892 1.90559 1.44786 1.75283 1.36642 1.22313 1.02387 0.93028 1.00867 1.22183 0.96378 0.91818 0.82762 1.86300 1.76059 1.59033 1.16509 1.23635 0.96819 0.98346 1.01447 1.22759 0.96360 0.95890 1.02031 1.23111 0.98021 0.95276 0.98987 1.23221 0.97758 0.82223 0.97989 1.21558 0.96694 0.98551 0.96395 1.20990 0.96699 0.86342 0.94286 0.94142 0.92714 0.98934 0.90248 0.91545 0.87478 0.86855 0.86718 0.84912 0.76293 0.88347 0.93302 0.91324 0.89308 0.90893 0.85840 0.89338 0.92723 0.91744 0.90926 0.97865 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.42 11.22 21.65 0.24 -54.18 16 2 C -0.05 -2.71 4.89 84.86 0.41 -2.29 16 3 Si 0.96 43.99 29.59 68.60 2.03 46.02 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.26 -14.07 9.56 84.03 0.80 -13.26 16 8 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 9 N -0.61 -29.38 2.97 -699.68 -2.08 -31.46 16 10 C 0.18 7.87 5.21 86.26 0.45 8.32 16 11 C -0.11 -3.46 5.24 30.44 0.16 -3.31 16 12 C -0.08 -2.07 0.77 -52.03 -0.04 -2.11 16 13 C 0.12 2.14 7.74 86.31 0.67 2.81 16 14 N -0.64 -15.12 3.44 -842.39 -2.90 -18.02 16 15 C 0.53 13.23 7.79 87.66 0.68 13.91 16 16 O -0.59 -19.42 14.35 15.29 0.22 -19.20 16 17 C -0.15 -2.43 5.08 29.85 0.15 -2.28 16 18 C 0.11 2.18 1.09 -10.27 -0.01 2.17 16 19 O -0.57 -15.29 13.40 -130.66 -1.75 -17.04 16 20 C -0.16 -3.16 7.08 31.18 0.22 -2.94 16 21 C -0.13 -2.08 8.02 31.18 0.25 -1.83 16 22 C -0.12 -1.64 7.47 31.12 0.23 -1.41 16 23 C 0.11 3.19 7.62 86.32 0.66 3.85 16 24 C -0.09 -2.82 5.22 30.60 0.16 -2.66 16 25 C 0.14 5.77 6.38 86.42 0.55 6.33 16 26 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 27 H 0.05 2.84 5.98 -2.39 -0.01 2.82 16 28 H -0.01 -0.36 8.07 -2.39 -0.02 -0.38 16 29 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 30 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.11 1.42 8.09 -2.39 -0.02 1.40 16 32 H 0.11 1.51 8.09 -2.38 -0.02 1.49 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.13 1.38 8.08 -2.38 -0.02 1.36 16 35 H 0.38 11.13 6.33 -74.06 -0.47 10.66 16 36 H 0.10 1.53 8.06 -2.38 -0.02 1.51 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.12 0.98 8.10 -2.38 -0.02 0.96 16 42 H 0.09 2.44 8.07 -2.39 -0.02 2.42 16 43 H 0.05 1.87 7.41 -2.39 -0.02 1.85 16 44 H 0.06 1.81 8.01 -2.39 -0.02 1.79 16 45 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.00 0.15 7.49 -2.39 -0.02 0.13 16 47 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 Total: -1.00 -69.26 366.48 1.60 -67.66 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.48 Total: 20.92 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 5.35 Total: 5.30 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -4.73 Total: -103.66 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -1.53 Total: -36.24 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.26 1.60 -67.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050514940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.790 kcal (2) G-P(sol) polarization free energy of solvation -69.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds