Wall clock time and date at job start Tue Mar 31 2020 10:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48499 * 109.47138 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.46864 * 120.00139 * 3 2 1 6 6 H 1.48500 * 109.47075 * 240.00255 * 3 2 1 7 7 C 1.38808 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00106 * 165.97463 * 7 2 1 9 9 N 1.36944 * 119.99932 * 345.96698 * 7 2 1 10 10 C 1.46920 * 120.62725 * 148.94458 * 9 7 2 11 11 C 1.53628 * 108.54493 * 126.37066 * 10 9 7 12 12 C 1.53041 * 109.24119 * 54.85203 * 11 10 9 13 13 H 1.08996 * 109.45841 * 58.53233 * 12 11 10 14 14 N 1.46494 * 109.45066 * 178.50234 * 12 11 10 15 15 C 1.34783 * 120.00131 * 275.06534 * 14 12 11 16 16 O 1.21282 * 119.99645 * 359.97438 * 15 14 12 17 17 C 1.50697 * 119.99965 * 180.02562 * 15 14 12 18 18 C 1.53007 * 112.84631 * 162.84483 * 17 15 14 19 19 C 1.52995 * 117.49687 * 134.79752 * 18 17 15 20 20 C 1.53001 * 117.49912 * 66.13885 * 18 17 15 21 21 C 1.53779 * 113.61859 * 31.53781 * 17 15 14 22 22 C 1.53780 * 87.07844 * 220.02001 * 21 17 15 23 23 C 1.53773 * 87.08422 * 25.42917 * 22 21 17 24 24 C 1.53040 * 109.53883 * 298.51528 * 12 11 10 25 25 H 1.09006 * 109.49971 * 301.41238 * 24 12 11 26 26 O 1.42902 * 109.50193 * 181.31675 * 24 12 11 27 27 C 1.46921 * 120.62951 * 329.22411 * 9 7 2 28 28 H 0.97000 * 119.99805 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.58894 * 246.20044 * 10 9 7 30 30 H 1.08997 * 109.59090 * 6.63057 * 10 9 7 31 31 H 1.09008 * 109.63149 * 294.86485 * 11 10 9 32 32 H 1.08993 * 109.46079 * 174.74161 * 11 10 9 33 33 H 0.97006 * 120.00130 * 95.06084 * 14 12 11 34 34 H 1.08998 * 115.54941 * 280.46687 * 18 17 15 35 35 H 1.08997 * 117.50310 * 359.97438 * 19 18 17 36 36 H 1.09002 * 117.49607 * 145.02128 * 19 18 17 37 37 H 1.08999 * 117.49351 * 214.98071 * 20 18 17 38 38 H 1.08999 * 117.49998 * 359.97199 * 20 18 17 39 39 H 1.09001 * 113.61155 * 334.56269 * 21 17 15 40 40 H 1.08996 * 113.61500 * 105.46495 * 21 17 15 41 41 H 1.09005 * 113.60971 * 270.87803 * 22 21 17 42 42 H 1.09005 * 113.69211 * 139.99316 * 22 21 17 43 43 H 1.09000 * 113.61773 * 220.01383 * 23 22 21 44 44 H 1.09006 * 113.61016 * 89.11540 * 23 22 21 45 45 H 0.96694 * 114.00527 * 180.16372 * 26 24 12 46 46 H 1.08996 * 109.59196 * 353.37437 * 27 9 7 47 47 H 1.09000 * 109.58560 * 113.79865 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0661 -1.2160 -0.2272 9 7 1.3562 -2.3705 0.2865 10 6 1.7856 -3.6375 -0.3209 11 6 2.0266 -4.6599 0.8002 12 6 0.7660 -4.7712 1.6607 13 1 -0.0746 -5.0731 1.0360 14 7 0.9784 -5.7713 2.7099 15 6 0.7623 -7.0762 2.4508 16 8 0.3915 -7.4224 1.3491 17 6 0.9802 -8.1050 3.5302 18 6 0.3081 -9.4439 3.2192 19 6 1.1248 -10.7159 3.4553 20 6 0.8411 -10.2420 2.0277 21 6 0.6900 -7.5823 4.9470 22 6 1.9278 -8.3707 5.4064 23 6 2.4489 -8.2395 3.9656 24 6 0.4631 -3.4154 2.3027 25 1 1.3135 -3.1012 2.9079 26 8 -0.6965 -3.5278 3.1303 27 6 0.2079 -2.3798 1.2030 28 1 -0.4850 0.8401 0.0004 29 1 1.0082 -4.0032 -0.9917 30 1 2.7087 -3.4808 -0.8790 31 1 2.8623 -4.3340 1.4196 32 1 2.2554 -5.6315 0.3625 33 1 1.2746 -5.4945 3.5912 34 1 -0.7629 -9.4895 3.4170 35 1 2.1410 -10.5990 3.8316 36 1 0.5911 -11.5985 3.8079 37 1 0.1208 -10.8129 1.4417 38 1 1.6702 -9.8130 1.4650 39 1 0.7993 -6.5022 5.0448 40 1 -0.2449 -7.9538 5.3665 41 1 1.7076 -9.3973 5.6993 42 1 2.5360 -7.8423 6.1406 43 1 2.9340 -9.1415 3.5928 44 1 3.0390 -7.3389 3.7951 45 1 -0.9488 -2.7034 3.5680 46 1 0.0895 -1.3931 1.6506 47 1 -0.6957 -2.6450 0.6539 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090463588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:34 Heat of formation + Delta-G solvation = -15.766323 kcal Electronic energy + Delta-G solvation = -26903.329809 eV Core-core repulsion = 23281.215161 eV Total energy + Delta-G solvation = -3622.114648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.00174 -38.80374 -37.36817 -35.67532 -35.24981 -34.11112 -32.06128 -29.57394 -28.85062 -27.23170 -25.98150 -25.00621 -22.66060 -22.39503 -22.05796 -21.54939 -20.63529 -19.57539 -18.37539 -17.40408 -16.73701 -16.54195 -16.39257 -15.66139 -15.30936 -14.85769 -14.40484 -14.34109 -13.81232 -13.59897 -13.55735 -13.23543 -12.79336 -12.61857 -12.25740 -12.17211 -12.09185 -11.89097 -11.67110 -11.54678 -11.49485 -11.18418 -10.91476 -10.83006 -10.77922 -10.56030 -10.42119 -10.36155 -10.21590 -10.06191 -10.04025 -9.67207 -9.42186 -9.10082 -8.68141 -8.51927 -6.73618 -5.87436 -3.35089 2.85262 3.29627 3.33518 3.38822 3.39466 3.87758 4.35783 4.38322 4.40308 4.41368 4.57052 4.60150 4.86763 4.87583 5.06537 5.21953 5.30668 5.40819 5.42654 5.45741 5.49317 5.49947 5.59597 5.62651 5.72855 5.75326 5.85964 5.92515 5.93497 6.01768 6.05795 6.10605 6.12497 6.19728 6.27000 6.46395 6.51459 6.71980 6.91250 6.92721 7.12158 7.45647 7.71268 7.84289 8.10459 8.37848 8.55871 9.11474 9.73026 10.31169 11.20752 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.028220 B = 0.003300 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.977165 B = 8482.887690 C = 8693.738713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.145 3.855 11 C -0.138 4.138 12 C 0.163 3.837 13 H 0.086 0.914 14 N -0.715 5.715 15 C 0.525 3.475 16 O -0.537 6.537 17 C -0.072 4.072 18 C -0.115 4.115 19 C -0.188 4.188 20 C -0.154 4.154 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.129 4.129 24 C 0.072 3.928 25 H 0.050 0.950 26 O -0.573 6.573 27 C 0.150 3.850 28 H 0.256 0.744 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.394 0.606 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.375 0.625 46 H 0.091 0.909 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -16.359 11.891 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.216 1.216 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.059 3.941 13 H 0.104 0.896 14 N -0.365 5.365 15 C 0.311 3.689 16 O -0.414 6.414 17 C -0.075 4.075 18 C -0.134 4.134 19 C -0.225 4.225 20 C -0.191 4.191 21 C -0.163 4.163 22 C -0.173 4.173 23 C -0.167 4.167 24 C 0.011 3.989 25 H 0.068 0.932 26 O -0.377 6.377 27 C 0.023 3.977 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.228 0.772 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.222 0.778 46 H 0.109 0.891 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.682 -17.058 10.859 20.398 hybrid contribution 0.435 1.721 0.546 1.857 sum 3.117 -15.337 11.404 19.365 Atomic orbital electron populations 1.69997 1.05282 1.25824 1.53492 1.25176 0.95371 0.98578 1.00253 0.86331 0.78878 0.83082 0.78217 1.21560 1.20950 1.20727 1.19148 0.91721 0.84159 1.43784 0.91565 1.43970 1.35234 1.03101 1.48938 1.21036 0.98281 0.86350 0.92526 1.22480 0.96628 1.00039 0.98723 1.20951 0.98614 0.85919 0.88594 0.89564 1.46128 1.68719 1.06224 1.15475 1.20193 0.76964 0.83000 0.88791 1.90672 1.45836 1.80511 1.24375 1.21509 0.97998 0.94045 0.93966 1.21516 0.98357 0.89008 1.04483 1.23213 1.01344 0.97242 1.00660 1.22785 1.03454 1.02327 0.90504 1.22976 0.99295 1.00281 0.93766 1.22848 0.97218 1.01071 0.96210 1.23070 0.94033 1.03066 0.96506 1.22984 0.86850 0.95791 0.93249 0.93207 1.86419 1.47977 1.38108 1.65205 1.21383 0.89892 0.97166 0.89230 0.93403 0.95830 0.92154 0.92160 0.91944 0.77150 0.87585 0.88261 0.88963 0.88949 0.88685 0.89521 0.90567 0.89594 0.91100 0.90274 0.89541 0.77837 0.89104 0.95234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.53 11.21 55.49 0.62 -24.91 16 2 C 0.01 0.14 4.97 -17.43 -0.09 0.06 16 3 Si 0.91 21.08 29.58 -169.99 -5.03 16.06 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.26 -6.91 9.57 -15.06 -0.14 -7.06 16 8 H 0.07 1.73 7.87 -52.49 -0.41 1.32 16 9 N -0.59 -14.46 2.98 -172.06 -0.51 -14.97 16 10 C 0.14 3.09 6.54 -3.49 -0.02 3.07 16 11 C -0.14 -2.53 5.67 -26.38 -0.15 -2.68 16 12 C 0.16 2.99 2.12 -67.89 -0.14 2.84 16 13 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 14 N -0.72 -10.86 4.78 -53.77 -0.26 -11.12 16 15 C 0.52 8.18 7.00 -10.98 -0.08 8.10 16 16 O -0.54 -10.40 15.29 5.56 0.08 -10.31 16 17 C -0.07 -0.82 1.09 -154.85 -0.17 -0.99 16 18 C -0.12 -1.28 4.96 -90.62 -0.45 -1.73 16 19 C -0.19 -1.65 8.84 -26.70 -0.24 -1.89 16 20 C -0.15 -1.73 9.25 -26.69 -0.25 -1.98 16 21 C -0.13 -1.18 7.09 -25.92 -0.18 -1.37 16 22 C -0.14 -1.05 7.58 -25.92 -0.20 -1.25 16 23 C -0.13 -1.21 6.73 -25.93 -0.17 -1.39 16 24 C 0.07 1.35 3.14 -26.61 -0.08 1.27 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 26 O -0.57 -9.78 13.16 -35.23 -0.46 -10.25 16 27 C 0.15 3.48 4.89 -3.71 -0.02 3.47 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 31 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.39 5.12 6.73 -40.82 -0.27 4.85 16 34 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.10 0.79 5.48 -51.93 -0.28 0.50 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 0.82 6.31 -51.93 -0.33 0.49 16 40 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.09 0.61 7.22 -51.93 -0.38 0.23 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.70 5.85 -51.93 -0.30 0.40 16 44 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 45 H 0.37 5.12 9.08 45.56 0.41 5.53 16 46 H 0.09 2.29 6.17 -51.93 -0.32 1.97 16 47 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -31.15 363.90 -9.35 -40.49 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.89 Total: 11.05 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.38 Total: -1.53 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.15 Total: -51.00 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.38 Total: -20.56 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.15 -9.35 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090463588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.728 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds