Wall clock time and date at job start Tue Mar 31 2020 10:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48499 * 109.47138 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.46864 * 120.00139 * 3 2 1 6 6 H 1.48500 * 109.47075 * 240.00255 * 3 2 1 7 7 C 1.38808 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00106 * 165.97463 * 7 2 1 9 9 N 1.36944 * 119.99932 * 345.96698 * 7 2 1 10 10 C 1.46920 * 120.62725 * 148.94458 * 9 7 2 11 11 C 1.53628 * 108.54493 * 126.37066 * 10 9 7 12 12 C 1.53041 * 109.24119 * 54.85203 * 11 10 9 13 13 H 1.08996 * 109.45841 * 58.53233 * 12 11 10 14 14 N 1.46494 * 109.45066 * 178.50234 * 12 11 10 15 15 C 1.34783 * 120.00131 * 275.06534 * 14 12 11 16 16 O 1.21282 * 119.99645 * 359.97438 * 15 14 12 17 17 C 1.50697 * 119.99965 * 180.02562 * 15 14 12 18 18 C 1.53007 * 112.84631 * 162.84483 * 17 15 14 19 19 C 1.52995 * 117.49687 * 134.79752 * 18 17 15 20 20 C 1.53001 * 117.49912 * 66.13885 * 18 17 15 21 21 C 1.53779 * 113.61859 * 31.53781 * 17 15 14 22 22 C 1.53780 * 87.07844 * 220.02001 * 21 17 15 23 23 C 1.53773 * 87.08422 * 25.42917 * 22 21 17 24 24 C 1.53040 * 109.53883 * 298.51528 * 12 11 10 25 25 H 1.09006 * 109.49971 * 301.41238 * 24 12 11 26 26 O 1.42902 * 109.50193 * 181.31675 * 24 12 11 27 27 C 1.46921 * 120.62951 * 329.22411 * 9 7 2 28 28 H 0.97000 * 119.99805 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.58894 * 246.20044 * 10 9 7 30 30 H 1.08997 * 109.59090 * 6.63057 * 10 9 7 31 31 H 1.09008 * 109.63149 * 294.86485 * 11 10 9 32 32 H 1.08993 * 109.46079 * 174.74161 * 11 10 9 33 33 H 0.97006 * 120.00130 * 95.06084 * 14 12 11 34 34 H 1.08998 * 115.54941 * 280.46687 * 18 17 15 35 35 H 1.08997 * 117.50310 * 359.97438 * 19 18 17 36 36 H 1.09002 * 117.49607 * 145.02128 * 19 18 17 37 37 H 1.08999 * 117.49351 * 214.98071 * 20 18 17 38 38 H 1.08999 * 117.49998 * 359.97199 * 20 18 17 39 39 H 1.09001 * 113.61155 * 334.56269 * 21 17 15 40 40 H 1.08996 * 113.61500 * 105.46495 * 21 17 15 41 41 H 1.09005 * 113.60971 * 270.87803 * 22 21 17 42 42 H 1.09005 * 113.69211 * 139.99316 * 22 21 17 43 43 H 1.09000 * 113.61773 * 220.01383 * 23 22 21 44 44 H 1.09006 * 113.61016 * 89.11540 * 23 22 21 45 45 H 0.96694 * 114.00527 * 180.16372 * 26 24 12 46 46 H 1.08996 * 109.59196 * 353.37437 * 27 9 7 47 47 H 1.09000 * 109.58560 * 113.79865 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0661 -1.2160 -0.2272 9 7 1.3562 -2.3705 0.2865 10 6 1.7856 -3.6375 -0.3209 11 6 2.0266 -4.6599 0.8002 12 6 0.7660 -4.7712 1.6607 13 1 -0.0746 -5.0731 1.0360 14 7 0.9784 -5.7713 2.7099 15 6 0.7623 -7.0762 2.4508 16 8 0.3915 -7.4224 1.3491 17 6 0.9802 -8.1050 3.5302 18 6 0.3081 -9.4439 3.2192 19 6 1.1248 -10.7159 3.4553 20 6 0.8411 -10.2420 2.0277 21 6 0.6900 -7.5823 4.9470 22 6 1.9278 -8.3707 5.4064 23 6 2.4489 -8.2395 3.9656 24 6 0.4631 -3.4154 2.3027 25 1 1.3135 -3.1012 2.9079 26 8 -0.6965 -3.5278 3.1303 27 6 0.2079 -2.3798 1.2030 28 1 -0.4850 0.8401 0.0004 29 1 1.0082 -4.0032 -0.9917 30 1 2.7087 -3.4808 -0.8790 31 1 2.8623 -4.3340 1.4196 32 1 2.2554 -5.6315 0.3625 33 1 1.2746 -5.4945 3.5912 34 1 -0.7629 -9.4895 3.4170 35 1 2.1410 -10.5990 3.8316 36 1 0.5911 -11.5985 3.8079 37 1 0.1208 -10.8129 1.4417 38 1 1.6702 -9.8130 1.4650 39 1 0.7993 -6.5022 5.0448 40 1 -0.2449 -7.9538 5.3665 41 1 1.7076 -9.3973 5.6993 42 1 2.5360 -7.8423 6.1406 43 1 2.9340 -9.1415 3.5928 44 1 3.0390 -7.3389 3.7951 45 1 -0.9488 -2.7034 3.5680 46 1 0.0895 -1.3931 1.6506 47 1 -0.6957 -2.6450 0.6539 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090463588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:33 Heat of formation + Delta-G solvation = -37.001378 kcal Electronic energy + Delta-G solvation = -26904.250631 eV Core-core repulsion = 23281.215161 eV Total energy + Delta-G solvation = -3623.035469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.99083 -40.18783 -38.74257 -36.90725 -36.53544 -35.57700 -33.85245 -31.29585 -30.53034 -28.28198 -26.83100 -26.64336 -24.26126 -23.63686 -23.19359 -22.48879 -21.87170 -21.20088 -19.48776 -18.84464 -18.14017 -18.08105 -17.44824 -16.98379 -16.57070 -16.19713 -15.77262 -15.62072 -15.56642 -15.03739 -14.99300 -14.47730 -14.34000 -13.87325 -13.58119 -13.44123 -13.31491 -13.15420 -13.00435 -12.83695 -12.64148 -12.58411 -12.32831 -12.25487 -12.10500 -12.04593 -11.92096 -11.64760 -11.37136 -11.35265 -11.18807 -10.98576 -10.85786 -10.61977 -10.29241 -10.00919 -8.73994 -7.92071 -5.44014 1.48688 1.49609 1.57190 1.66351 2.12378 2.48222 2.98326 3.10547 3.26451 3.53371 3.59997 3.61943 3.64146 3.85022 3.89325 3.97836 4.05574 4.11963 4.26196 4.28995 4.38372 4.42319 4.44440 4.66957 4.69622 4.74048 4.77036 4.86690 4.90440 4.93399 5.01145 5.01629 5.08363 5.13495 5.14929 5.19959 5.29417 5.29766 5.33310 5.49750 5.52539 5.54346 5.61627 6.33182 6.63171 6.81065 7.08794 7.33924 7.74645 8.29739 9.14221 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.028220 B = 0.003300 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.977165 B = 8482.887690 C = 8693.738713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.045 4.045 3 Si 0.973 3.027 4 H -0.295 1.295 5 H -0.272 1.272 6 H -0.277 1.277 7 C -0.271 4.271 8 H 0.072 0.928 9 N -0.603 5.603 10 C 0.142 3.858 11 C -0.121 4.121 12 C 0.171 3.829 13 H 0.049 0.951 14 N -0.704 5.704 15 C 0.519 3.481 16 O -0.582 6.582 17 C -0.076 4.076 18 C -0.131 4.131 19 C -0.153 4.153 20 C -0.175 4.175 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.128 4.128 24 C 0.093 3.907 25 H 0.066 0.934 26 O -0.573 6.573 27 C 0.159 3.841 28 H 0.252 0.748 29 H 0.006 0.994 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.408 0.592 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.069 0.931 47 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 -17.377 14.539 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.241 4.241 3 Si 0.800 3.200 4 H -0.221 1.221 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.401 4.401 8 H 0.089 0.911 9 N -0.328 5.328 10 C 0.016 3.984 11 C -0.161 4.161 12 C 0.065 3.935 13 H 0.068 0.932 14 N -0.356 5.356 15 C 0.306 3.694 16 O -0.461 6.461 17 C -0.079 4.079 18 C -0.150 4.150 19 C -0.189 4.189 20 C -0.213 4.213 21 C -0.163 4.163 22 C -0.156 4.156 23 C -0.165 4.165 24 C 0.032 3.968 25 H 0.084 0.916 26 O -0.380 6.380 27 C 0.032 3.968 28 H 0.061 0.939 29 H 0.024 0.976 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.245 0.755 34 H 0.118 0.882 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.241 0.759 46 H 0.088 0.912 47 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 4.566 -18.091 13.552 23.060 hybrid contribution -0.219 2.008 -0.361 2.052 sum 4.347 -16.083 13.191 21.250 Atomic orbital electron populations 1.70168 1.06791 1.26231 1.54836 1.25955 0.96095 1.01765 1.00302 0.85272 0.77490 0.78700 0.78528 1.22097 1.19775 1.20261 1.19513 0.92184 0.85082 1.43292 0.91053 1.44213 1.35240 1.03623 1.49735 1.21123 0.97829 0.85997 0.93480 1.22255 0.96979 0.99093 0.97747 1.20598 0.97317 0.86496 0.89041 0.93222 1.45928 1.68573 1.05738 1.15316 1.21085 0.75570 0.83445 0.89260 1.90653 1.47749 1.81144 1.26580 1.21625 1.00121 0.92879 0.93272 1.21576 0.98544 0.89943 1.04928 1.23288 1.01716 0.96228 0.97662 1.22748 1.03286 1.03526 0.91703 1.23030 1.00619 1.00608 0.92052 1.22798 0.95792 1.01692 0.95293 1.23127 0.92353 1.03420 0.97629 1.22547 0.87813 0.94455 0.91948 0.91604 1.86399 1.47420 1.39414 1.64756 1.21185 0.88311 0.97396 0.89866 0.93866 0.97622 0.91474 0.90652 0.91475 0.75452 0.88214 0.86768 0.87078 0.89271 0.90485 0.89495 0.90150 0.88295 0.89400 0.89615 0.89633 0.75890 0.91244 0.98927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.25 11.21 21.65 0.24 -54.01 16 2 C -0.05 -2.46 4.97 84.86 0.42 -2.04 16 3 Si 0.97 43.38 29.58 68.60 2.03 45.41 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.27 -14.56 9.57 84.03 0.80 -13.75 16 8 H 0.07 3.69 7.87 -2.91 -0.02 3.67 16 9 N -0.60 -30.21 2.98 -698.27 -2.08 -32.29 16 10 C 0.14 6.17 6.54 86.51 0.57 6.73 16 11 C -0.12 -4.37 5.67 30.82 0.17 -4.20 16 12 C 0.17 6.28 2.12 45.02 0.10 6.38 16 13 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 14 N -0.70 -20.75 4.78 -442.41 -2.12 -22.87 16 15 C 0.52 15.98 7.00 87.66 0.61 16.60 16 16 O -0.58 -23.14 15.29 -3.04 -0.05 -23.19 16 17 C -0.08 -1.61 1.09 -52.40 -0.06 -1.67 16 18 C -0.13 -2.76 4.96 -10.79 -0.05 -2.81 16 19 C -0.15 -2.26 8.84 30.62 0.27 -1.99 16 20 C -0.18 -3.88 9.25 30.62 0.28 -3.59 16 21 C -0.13 -2.02 7.09 31.12 0.22 -1.80 16 22 C -0.12 -1.36 7.58 31.12 0.24 -1.13 16 23 C -0.13 -2.02 6.73 31.12 0.21 -1.82 16 24 C 0.09 3.47 3.14 30.67 0.10 3.56 16 25 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 26 O -0.57 -19.18 13.16 -148.98 -1.96 -21.14 16 27 C 0.16 7.62 4.89 86.36 0.42 8.04 16 28 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.07 2.78 7.93 -2.39 -0.02 2.76 16 31 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.41 9.75 6.73 -92.70 -0.62 9.12 16 34 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.11 1.37 5.48 -2.39 -0.01 1.36 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.09 1.39 6.31 -2.39 -0.02 1.37 16 40 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 41 H 0.10 0.92 7.22 -2.38 -0.02 0.91 16 42 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.09 1.25 5.85 -2.39 -0.01 1.24 16 44 H 0.09 1.39 8.09 -2.38 -0.02 1.37 16 45 H 0.39 10.29 9.08 -74.06 -0.67 9.61 16 46 H 0.07 3.60 6.17 -2.39 -0.01 3.59 16 47 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 Total: -1.00 -69.54 363.90 0.06 -69.48 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: -0.31 Total: 32.09 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 4.30 Total: 6.51 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -3.95 Total: -109.17 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -2.01 Total: -44.33 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -69.54 0.06 -69.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090463588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.476 kcal (2) G-P(sol) polarization free energy of solvation -69.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds