Wall clock time and date at job start Tue Mar 31 2020 09:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46869 * 2 1 4 4 C 1.36933 * 120.00268 * 84.82726 * 3 2 1 5 5 H 1.07994 * 119.99804 * 34.77270 * 4 3 2 6 6 C 1.38813 * 120.00114 * 215.05298 * 4 3 2 7 7 N 1.31619 * 119.99974 * 12.57012 * 6 4 3 8 8 Si 1.86799 * 120.00280 * 192.57011 * 6 4 3 9 9 H 1.48496 * 109.47104 * 89.99825 * 8 6 4 10 10 H 1.48495 * 109.47411 * 209.99860 * 8 6 4 11 11 H 1.48499 * 109.46703 * 330.00170 * 8 6 4 12 12 C 1.46504 * 119.99956 * 264.82674 * 3 2 1 13 13 H 1.09000 * 109.47389 * 185.76100 * 12 3 2 14 14 C 1.53008 * 109.47026 * 65.75956 * 12 3 2 15 15 C 1.52997 * 109.47143 * 305.76515 * 12 3 2 16 16 N 1.46501 * 109.46709 * 304.99752 * 15 12 3 17 17 C 1.34780 * 120.00122 * 180.02562 * 16 15 12 18 18 O 1.21555 * 119.99612 * 359.97438 * 17 16 15 19 19 C 1.47847 * 120.00255 * 180.02562 * 17 16 15 20 20 C 1.39595 * 120.13026 * 0.51086 * 19 17 16 21 21 C 1.37949 * 119.90032 * 179.74544 * 20 19 17 22 22 C 1.38343 * 120.17809 * 0.53564 * 21 20 19 23 23 C 1.38553 * 120.26358 * 359.71793 * 22 21 20 24 24 F 1.35095 * 119.95075 * 180.02562 * 23 22 21 25 25 C 1.38207 * 120.09334 * 0.02692 * 23 22 21 26 26 C 1.50701 * 120.08872 * 179.97438 * 25 23 22 27 27 H 1.08994 * 109.47361 * 299.99727 * 1 2 3 28 28 H 1.09005 * 109.47347 * 60.00597 * 1 2 3 29 29 H 1.09005 * 109.46564 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46949 * 239.99823 * 2 1 3 31 31 H 1.08999 * 109.47386 * 119.99839 * 2 1 3 32 32 H 0.97005 * 120.00277 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47154 * 300.00288 * 14 12 3 34 34 H 1.09001 * 109.46786 * 60.00288 * 14 12 3 35 35 H 1.09004 * 109.46861 * 180.02562 * 14 12 3 36 36 H 1.08996 * 109.47776 * 64.99335 * 15 12 3 37 37 H 1.09002 * 109.47322 * 185.00093 * 15 12 3 38 38 H 0.96994 * 120.00479 * 359.97438 * 16 15 12 39 39 H 1.07997 * 120.04862 * 0.02562 * 20 19 17 40 40 H 1.08006 * 119.91163 * 180.23472 * 21 20 19 41 41 H 1.07994 * 119.86923 * 179.70266 * 22 21 20 42 42 H 1.08997 * 109.47253 * 263.18937 * 26 25 23 43 43 H 1.09006 * 109.46797 * 23.18617 * 26 25 23 44 44 H 1.08998 * 109.47517 * 143.18152 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1457 2.0624 1.1810 5 1 2.4424 1.5383 2.0774 6 6 1.8879 3.4256 1.2273 7 7 1.2889 4.0168 0.2153 8 14 2.3909 4.4210 2.7258 9 1 3.7691 4.9402 2.5353 10 1 1.4533 5.5590 2.9018 11 1 2.3504 3.5551 3.9315 12 6 2.3703 2.0337 -1.2636 13 1 2.8061 3.0115 -1.0586 14 6 1.1119 2.2050 -2.1170 15 6 3.3844 1.1713 -2.0177 16 7 4.5387 0.9079 -1.1549 17 6 5.5653 0.1635 -1.6114 18 8 5.5333 -0.2896 -2.7389 19 6 6.7300 -0.1028 -0.7405 20 6 6.7644 0.4065 0.5588 21 6 7.8511 0.1507 1.3691 22 6 8.9116 -0.5998 0.8939 23 6 8.8873 -1.1043 -0.3963 24 9 9.9262 -1.8368 -0.8538 25 6 7.8018 -0.8592 -1.2159 26 6 7.7757 -1.4075 -2.6194 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.1084 4.9694 0.2478 33 1 0.6761 1.2272 -2.3220 34 1 0.3895 2.8194 -1.5797 35 1 1.3739 2.6901 -3.0573 36 1 2.9193 0.2270 -2.3006 37 1 3.7132 1.6972 -2.9141 38 1 4.5645 1.2698 -0.2554 39 1 5.9394 0.9961 0.9306 40 1 7.8762 0.5415 2.3757 41 1 9.7620 -0.7929 1.5309 42 1 8.1092 -0.6385 -3.3161 43 1 8.4394 -2.2698 -2.6849 44 1 6.7598 -1.7110 -2.8721 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153485216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:17 Heat of formation + Delta-G solvation = -38.934862 kcal Electronic energy + Delta-G solvation = -26166.824143 eV Core-core repulsion = 22420.244526 eV Total energy + Delta-G solvation = -3746.579616 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.98039 -40.13952 -38.14670 -36.88558 -34.09649 -32.60523 -31.91531 -31.40991 -30.22072 -28.35466 -27.21890 -25.53589 -24.04300 -23.42943 -21.76165 -21.52184 -20.23514 -19.35865 -17.95833 -16.98853 -16.61723 -15.94846 -15.84210 -15.76559 -15.28354 -14.98356 -14.71456 -14.21073 -13.84140 -13.51183 -13.44193 -13.19075 -13.00671 -12.70731 -12.39546 -12.29860 -12.00802 -11.90148 -11.85120 -11.58692 -11.42915 -11.27759 -11.26597 -11.03782 -10.87872 -10.45550 -10.32401 -10.01047 -9.60272 -9.49967 -9.30769 -9.09305 -8.70988 -8.59383 -8.44685 -6.69473 -5.91221 -3.43287 0.70866 1.08018 2.93852 3.26998 3.35807 3.36928 3.52625 3.77738 4.20326 4.37652 4.65294 4.67581 4.89741 4.97358 5.20061 5.26054 5.35032 5.55802 5.66527 5.80120 5.84770 5.91781 5.99623 6.07508 6.12706 6.16889 6.19513 6.29557 6.41624 6.43938 6.50315 6.54635 6.70468 6.73333 6.76840 6.78641 6.96820 7.03250 7.25813 7.47287 7.62003 7.77690 8.02538 8.40015 8.59848 9.13352 9.72486 10.30489 11.15203 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.004355 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.242477 B = 6428.558354 C = 7506.744618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.583 5.583 4 C -0.264 4.264 5 H 0.064 0.936 6 C 0.014 3.986 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.287 1.287 10 H -0.291 1.291 11 H -0.279 1.279 12 C 0.183 3.817 13 H 0.094 0.906 14 C -0.146 4.146 15 C 0.100 3.900 16 N -0.695 5.695 17 C 0.549 3.451 18 O -0.546 6.546 19 C -0.106 4.106 20 C -0.087 4.087 21 C -0.106 4.106 22 C -0.130 4.130 23 C 0.079 3.921 24 F -0.138 7.138 25 C -0.059 4.059 26 C -0.124 4.124 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.027 0.973 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.254 0.746 33 H 0.028 0.972 34 H 0.088 0.912 35 H 0.027 0.973 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.410 0.590 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.578 -6.814 -0.357 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.305 5.305 4 C -0.394 4.394 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.214 1.214 10 H -0.218 1.218 11 H -0.204 1.204 12 C 0.075 3.925 13 H 0.112 0.888 14 C -0.205 4.205 15 C -0.025 4.025 16 N -0.345 5.345 17 C 0.335 3.665 18 O -0.426 6.426 19 C -0.110 4.110 20 C -0.106 4.106 21 C -0.124 4.124 22 C -0.149 4.149 23 C 0.060 3.940 24 F -0.117 7.117 25 C -0.061 4.061 26 C -0.180 4.180 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.107 0.893 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.248 0.752 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.496 -6.962 -1.180 12.650 hybrid contribution 0.280 0.743 1.270 1.498 sum 10.776 -6.219 0.090 12.442 Atomic orbital electron populations 1.22385 0.99773 0.98293 1.02110 1.20812 0.91955 0.87614 0.98035 1.43940 1.74082 1.09851 1.02654 1.19111 1.40824 0.90958 0.88503 0.91852 1.25232 0.97740 0.98543 0.97081 1.69944 1.42168 1.10178 1.31134 0.86380 0.77947 0.79970 0.82939 1.21383 1.21762 1.20437 1.20427 0.91438 0.95516 0.85077 0.88780 1.22196 1.00479 0.99775 0.98074 1.22182 0.86551 1.00508 0.93259 1.45916 1.18407 1.51156 1.19034 1.18114 0.82565 0.79282 0.86517 1.90656 1.80589 1.51666 1.19731 1.19786 0.95302 1.00855 0.95013 1.21571 0.98715 0.97770 0.92576 1.20957 0.92831 0.98228 1.00402 1.21289 1.00386 0.99012 0.94186 1.17402 0.85885 0.97159 0.93536 1.91472 1.55943 1.74986 1.89290 1.20037 0.91784 0.96835 0.97467 1.21093 1.05684 1.00355 0.90898 0.92910 0.93132 0.95438 0.94504 0.94599 0.93535 0.95272 0.89319 0.95414 0.92510 0.92480 0.75246 0.84135 0.84367 0.84575 0.90622 0.92415 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.03 37.16 0.37 -2.79 16 2 C 0.14 2.78 5.81 -4.04 -0.02 2.75 16 3 N -0.58 -12.52 1.81 -165.66 -0.30 -12.82 16 4 C -0.26 -6.27 9.52 -15.06 -0.14 -6.41 16 5 H 0.06 1.51 7.86 -52.49 -0.41 1.10 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -22.82 9.89 55.49 0.55 -22.28 16 8 Si 0.90 19.67 29.57 -169.99 -5.03 14.64 16 9 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 C 0.18 3.76 1.92 -67.93 -0.13 3.63 16 13 H 0.09 2.20 6.34 -51.93 -0.33 1.87 16 14 C -0.15 -2.95 8.32 37.16 0.31 -2.64 16 15 C 0.10 1.84 4.80 -4.04 -0.02 1.82 16 16 N -0.69 -12.00 5.34 -61.25 -0.33 -12.32 16 17 C 0.55 9.36 7.75 -12.33 -0.10 9.27 16 18 O -0.55 -10.38 13.23 5.32 0.07 -10.31 16 19 C -0.11 -1.57 5.87 -104.98 -0.62 -2.19 16 20 C -0.09 -1.12 9.54 -39.18 -0.37 -1.49 16 21 C -0.11 -1.14 10.03 -39.65 -0.40 -1.53 16 22 C -0.13 -1.40 10.02 -39.43 -0.40 -1.79 16 23 C 0.08 1.02 7.24 -39.48 -0.29 0.73 16 24 F -0.14 -1.78 16.36 2.25 0.04 -1.74 16 25 C -0.06 -0.84 5.92 -104.15 -0.62 -1.46 16 26 C -0.12 -1.72 8.72 36.01 0.31 -1.40 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.99 5.96 -51.93 -0.31 0.68 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.69 6.24 -51.93 -0.32 0.37 16 31 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.25 6.47 8.31 -40.82 -0.34 6.13 16 33 H 0.03 0.55 6.40 -51.93 -0.33 0.22 16 34 H 0.09 2.06 6.72 -51.93 -0.35 1.71 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 1.07 6.71 -51.93 -0.35 0.72 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.41 7.02 6.17 -40.82 -0.25 6.77 16 39 H 0.14 1.75 6.40 -52.49 -0.34 1.41 16 40 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 41 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 44 H 0.11 1.68 5.65 -51.93 -0.29 1.39 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -26.10 353.07 -8.05 -34.15 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.19 Total: 8.59 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.19 Total: -3.23 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.08 Total: -47.42 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -26.10 -8.05 -34.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153485216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.783 kcal (2) G-P(sol) polarization free energy of solvation -26.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds