Wall clock time and date at job start Tue Mar 31 2020 09:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46869 * 2 1 4 4 C 1.36933 * 120.00268 * 84.82726 * 3 2 1 5 5 H 1.07994 * 119.99804 * 34.77270 * 4 3 2 6 6 C 1.38813 * 120.00114 * 215.05298 * 4 3 2 7 7 N 1.31619 * 119.99974 * 12.57012 * 6 4 3 8 8 Si 1.86799 * 120.00280 * 192.57011 * 6 4 3 9 9 H 1.48496 * 109.47104 * 89.99825 * 8 6 4 10 10 H 1.48495 * 109.47411 * 209.99860 * 8 6 4 11 11 H 1.48499 * 109.46703 * 330.00170 * 8 6 4 12 12 C 1.46504 * 119.99956 * 264.82674 * 3 2 1 13 13 H 1.09000 * 109.47389 * 185.76100 * 12 3 2 14 14 C 1.53008 * 109.47026 * 65.75956 * 12 3 2 15 15 C 1.52997 * 109.47143 * 305.76515 * 12 3 2 16 16 N 1.46501 * 109.46709 * 304.99752 * 15 12 3 17 17 C 1.34780 * 120.00122 * 180.02562 * 16 15 12 18 18 O 1.21555 * 119.99612 * 359.97438 * 17 16 15 19 19 C 1.47847 * 120.00255 * 180.02562 * 17 16 15 20 20 C 1.39595 * 120.13026 * 0.51086 * 19 17 16 21 21 C 1.37949 * 119.90032 * 179.74544 * 20 19 17 22 22 C 1.38343 * 120.17809 * 0.53564 * 21 20 19 23 23 C 1.38553 * 120.26358 * 359.71793 * 22 21 20 24 24 F 1.35095 * 119.95075 * 180.02562 * 23 22 21 25 25 C 1.38207 * 120.09334 * 0.02692 * 23 22 21 26 26 C 1.50701 * 120.08872 * 179.97438 * 25 23 22 27 27 H 1.08994 * 109.47361 * 299.99727 * 1 2 3 28 28 H 1.09005 * 109.47347 * 60.00597 * 1 2 3 29 29 H 1.09005 * 109.46564 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46949 * 239.99823 * 2 1 3 31 31 H 1.08999 * 109.47386 * 119.99839 * 2 1 3 32 32 H 0.97005 * 120.00277 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47154 * 300.00288 * 14 12 3 34 34 H 1.09001 * 109.46786 * 60.00288 * 14 12 3 35 35 H 1.09004 * 109.46861 * 180.02562 * 14 12 3 36 36 H 1.08996 * 109.47776 * 64.99335 * 15 12 3 37 37 H 1.09002 * 109.47322 * 185.00093 * 15 12 3 38 38 H 0.96994 * 120.00479 * 359.97438 * 16 15 12 39 39 H 1.07997 * 120.04862 * 0.02562 * 20 19 17 40 40 H 1.08006 * 119.91163 * 180.23472 * 21 20 19 41 41 H 1.07994 * 119.86923 * 179.70266 * 22 21 20 42 42 H 1.08997 * 109.47253 * 263.18937 * 26 25 23 43 43 H 1.09006 * 109.46797 * 23.18617 * 26 25 23 44 44 H 1.08998 * 109.47517 * 143.18152 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1457 2.0624 1.1810 5 1 2.4424 1.5383 2.0774 6 6 1.8879 3.4256 1.2273 7 7 1.2889 4.0168 0.2153 8 14 2.3909 4.4210 2.7258 9 1 3.7691 4.9402 2.5353 10 1 1.4533 5.5590 2.9018 11 1 2.3504 3.5551 3.9315 12 6 2.3703 2.0337 -1.2636 13 1 2.8061 3.0115 -1.0586 14 6 1.1119 2.2050 -2.1170 15 6 3.3844 1.1713 -2.0177 16 7 4.5387 0.9079 -1.1549 17 6 5.5653 0.1635 -1.6114 18 8 5.5333 -0.2896 -2.7389 19 6 6.7300 -0.1028 -0.7405 20 6 6.7644 0.4065 0.5588 21 6 7.8511 0.1507 1.3691 22 6 8.9116 -0.5998 0.8939 23 6 8.8873 -1.1043 -0.3963 24 9 9.9262 -1.8368 -0.8538 25 6 7.8018 -0.8592 -1.2159 26 6 7.7757 -1.4075 -2.6194 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.1084 4.9694 0.2478 33 1 0.6761 1.2272 -2.3220 34 1 0.3895 2.8194 -1.5797 35 1 1.3739 2.6901 -3.0573 36 1 2.9193 0.2270 -2.3006 37 1 3.7132 1.6972 -2.9141 38 1 4.5645 1.2698 -0.2554 39 1 5.9394 0.9961 0.9306 40 1 7.8762 0.5415 2.3757 41 1 9.7620 -0.7929 1.5309 42 1 8.1092 -0.6385 -3.3161 43 1 8.4394 -2.2698 -2.6849 44 1 6.7598 -1.7110 -2.8721 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153485216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:16 Heat of formation + Delta-G solvation = -51.053725 kcal Electronic energy + Delta-G solvation = -26167.349656 eV Core-core repulsion = 22420.244526 eV Total energy + Delta-G solvation = -3747.105130 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.95442 -41.35155 -39.36746 -38.44379 -35.54595 -33.73275 -33.61604 -32.80800 -31.46770 -30.07884 -28.30134 -26.94681 -25.78137 -24.59109 -23.27594 -22.64260 -21.50167 -20.98632 -19.22420 -18.60239 -17.72085 -17.12817 -16.86171 -16.75020 -16.66000 -16.46694 -16.38018 -15.72990 -15.33925 -14.89790 -14.51698 -14.33170 -14.23221 -14.19625 -13.90105 -13.61326 -13.37429 -13.23245 -13.07938 -12.93753 -12.91043 -12.82782 -12.75378 -12.59514 -12.26122 -12.12420 -12.05667 -11.75215 -11.24308 -11.19796 -10.63026 -10.43653 -10.18387 -9.80320 -9.68277 -8.47695 -7.77165 -5.30059 -0.31041 0.11254 1.52578 1.57165 1.62382 1.79206 2.23184 2.57819 2.67556 3.22065 3.39134 3.62317 3.69680 3.70795 3.89298 3.97117 4.25078 4.27731 4.47829 4.54826 4.62494 4.64297 4.72482 4.76174 4.86532 4.89865 4.92601 4.93719 5.06855 5.08480 5.12945 5.15436 5.19978 5.27294 5.34555 5.37857 5.58551 5.61779 5.78294 5.78640 5.80138 6.00866 6.54890 6.65652 7.24067 7.30188 7.95375 8.48842 9.26850 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.004355 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.242477 B = 6428.558354 C = 7506.744618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 N -0.590 5.590 4 C -0.261 4.261 5 H 0.064 0.936 6 C -0.029 4.029 7 N -0.914 5.914 8 Si 0.952 3.048 9 H -0.284 1.284 10 H -0.306 1.306 11 H -0.273 1.273 12 C 0.190 3.810 13 H 0.065 0.935 14 C -0.136 4.136 15 C 0.113 3.887 16 N -0.695 5.695 17 C 0.548 3.452 18 O -0.570 6.570 19 C -0.126 4.126 20 C -0.090 4.090 21 C -0.096 4.096 22 C -0.114 4.114 23 C 0.070 3.930 24 F -0.140 7.140 25 C -0.075 4.075 26 C -0.119 4.119 27 H 0.029 0.971 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.247 0.753 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.040 0.960 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.411 0.589 39 H 0.141 0.859 40 H 0.172 0.828 41 H 0.170 0.830 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.156 -7.715 1.155 14.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.016 3.984 3 N -0.312 5.312 4 C -0.391 4.391 5 H 0.082 0.918 6 C -0.226 4.226 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.210 1.210 10 H -0.233 1.233 11 H -0.198 1.198 12 C 0.083 3.917 13 H 0.084 0.916 14 C -0.195 4.195 15 C -0.012 4.012 16 N -0.345 5.345 17 C 0.336 3.664 18 O -0.453 6.453 19 C -0.129 4.129 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.133 4.133 23 C 0.051 3.949 24 F -0.118 7.118 25 C -0.077 4.077 26 C -0.175 4.175 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.249 0.751 39 H 0.159 0.841 40 H 0.190 0.810 41 H 0.187 0.813 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.085 -7.885 0.340 14.434 hybrid contribution -0.174 0.963 0.821 1.277 sum 11.910 -6.922 1.161 13.825 Atomic orbital electron populations 1.22264 0.99225 0.99662 1.00467 1.20873 0.92296 0.86527 0.98668 1.44030 1.74412 1.10391 1.02364 1.19288 1.39567 0.91081 0.89162 0.91828 1.25771 0.98371 0.99493 0.99012 1.70096 1.43592 1.09666 1.32502 0.85516 0.77200 0.78272 0.80814 1.21017 1.23335 1.19797 1.20247 0.91858 0.94503 0.85071 0.91644 1.22039 0.99602 0.99747 0.98154 1.21897 0.86467 0.99789 0.93047 1.45855 1.18297 1.51480 1.18878 1.18493 0.82920 0.78461 0.86510 1.90647 1.81157 1.52563 1.20920 1.19620 0.94830 1.02773 0.95717 1.21686 0.99644 0.97561 0.91998 1.21329 0.91556 0.97136 1.01384 1.21678 1.01121 0.97102 0.93358 1.17540 0.85498 0.97579 0.94269 1.91469 1.55842 1.75080 1.89457 1.20104 0.92451 0.97367 0.97746 1.20978 1.04661 1.00698 0.91176 0.95175 0.94036 0.92546 0.93527 0.94210 0.94411 0.94301 0.92394 0.94072 0.92667 0.92410 0.75144 0.84088 0.81016 0.81267 0.91033 0.91169 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.79 10.03 71.98 0.72 -5.07 16 2 C 0.14 5.39 5.81 86.38 0.50 5.90 16 3 N -0.59 -25.15 1.81 -678.02 -1.23 -26.38 16 4 C -0.26 -12.27 9.52 84.03 0.80 -11.47 16 5 H 0.06 2.97 7.86 -2.91 -0.02 2.94 16 6 C -0.03 -1.42 4.95 84.86 0.42 -1.00 16 7 N -0.91 -47.64 9.89 21.65 0.21 -47.43 16 8 Si 0.95 40.39 29.57 68.60 2.03 42.42 16 9 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.31 -13.65 7.11 99.48 0.71 -12.95 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 12 C 0.19 7.87 1.92 44.99 0.09 7.96 16 13 H 0.07 3.12 6.34 -2.39 -0.02 3.11 16 14 C -0.14 -5.52 8.32 71.98 0.60 -4.92 16 15 C 0.11 4.15 4.80 86.38 0.41 4.57 16 16 N -0.69 -23.87 5.34 -465.97 -2.49 -26.36 16 17 C 0.55 18.70 7.75 86.79 0.67 19.37 16 18 O -0.57 -21.99 13.23 -3.89 -0.05 -22.04 16 19 C -0.13 -3.63 5.87 -20.09 -0.12 -3.75 16 20 C -0.09 -2.12 9.54 22.53 0.21 -1.91 16 21 C -0.10 -1.70 10.03 22.23 0.22 -1.48 16 22 C -0.11 -2.02 10.02 22.37 0.22 -1.80 16 23 C 0.07 1.65 7.24 22.34 0.16 1.81 16 24 F -0.14 -3.31 16.36 44.97 0.74 -2.57 16 25 C -0.07 -2.06 5.92 -19.56 -0.12 -2.17 16 26 C -0.12 -3.29 8.72 71.24 0.62 -2.67 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.59 5.96 -2.38 -0.01 1.57 16 29 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.05 1.68 6.24 -2.39 -0.01 1.67 16 31 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 32 H 0.25 12.83 8.31 -92.70 -0.77 12.06 16 33 H 0.04 1.46 6.40 -2.39 -0.02 1.45 16 34 H 0.06 2.73 6.72 -2.39 -0.02 2.72 16 35 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 2.04 6.71 -2.39 -0.02 2.03 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.41 13.94 6.17 -92.71 -0.57 13.36 16 39 H 0.14 3.28 6.40 -2.91 -0.02 3.26 16 40 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 41 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 1.69 7.45 -2.38 -0.02 1.67 16 44 H 0.09 2.82 5.65 -2.39 -0.01 2.80 16 Total: -1.00 -56.24 353.07 5.09 -51.15 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.45 Total: 27.84 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 5.43 Total: 3.36 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -3.50 Total: -100.17 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.04 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.74 Total: -2.57 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -56.24 5.09 -51.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153485216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.100 kcal (2) G-P(sol) polarization free energy of solvation -56.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds