Wall clock time and date at job start Tue Mar 31 2020 09:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46905 * 2 1 4 4 C 1.36937 * 120.00069 * 275.91565 * 3 2 1 5 5 H 1.07991 * 119.99821 * 33.78049 * 4 3 2 6 6 C 1.38811 * 119.99840 * 213.78134 * 4 3 2 7 7 N 1.31617 * 120.00045 * 12.92767 * 6 4 3 8 8 Si 1.86802 * 119.99808 * 192.93132 * 6 4 3 9 9 H 1.48500 * 109.47190 * 60.00049 * 8 6 4 10 10 H 1.48498 * 109.46867 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47118 * 299.99448 * 8 6 4 12 12 C 1.46501 * 119.99889 * 95.91829 * 3 2 1 13 13 H 1.08999 * 109.47214 * 180.62241 * 12 3 2 14 14 C 1.53002 * 109.46966 * 60.61692 * 12 3 2 15 15 C 1.53003 * 109.46831 * 300.61944 * 12 3 2 16 16 N 1.46495 * 109.47115 * 305.00259 * 15 12 3 17 17 C 1.34777 * 119.99786 * 180.02562 * 16 15 12 18 18 O 1.21562 * 120.00420 * 359.97438 * 17 16 15 19 19 C 1.47727 * 120.00035 * 179.97438 * 17 16 15 20 20 C 1.39678 * 120.11577 * 353.37276 * 19 17 16 21 21 C 1.37810 * 119.87986 * 180.27525 * 20 19 17 22 22 C 1.38680 * 120.11917 * 359.46798 * 21 20 19 23 23 F 1.35101 * 119.88510 * 180.27687 * 22 21 20 24 24 C 1.38641 * 120.23407 * 0.55694 * 22 21 20 25 25 C 1.37851 * 120.12211 * 359.69739 * 24 22 21 26 26 C 1.50703 * 120.06361 * 180.02562 * 25 24 22 27 27 H 1.09000 * 109.47138 * 60.00279 * 1 2 3 28 28 H 1.08999 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46839 * 299.99369 * 1 2 3 30 30 H 1.08999 * 109.47050 * 240.00133 * 2 1 3 31 31 H 1.08998 * 109.47428 * 120.00438 * 2 1 3 32 32 H 0.97006 * 120.00191 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47118 * 60.00667 * 14 12 3 34 34 H 1.09005 * 109.46822 * 179.97438 * 14 12 3 35 35 H 1.09001 * 109.47285 * 299.99883 * 14 12 3 36 36 H 1.08998 * 109.47134 * 184.99573 * 15 12 3 37 37 H 1.09005 * 109.47057 * 65.00440 * 15 12 3 38 38 H 0.96993 * 120.00296 * 359.97438 * 16 15 12 39 39 H 1.07997 * 120.06013 * 359.97438 * 20 19 17 40 40 H 1.07996 * 119.94583 * 179.74739 * 21 20 19 41 41 H 1.08009 * 119.93370 * 179.72742 * 24 22 21 42 42 H 1.08996 * 109.47035 * 263.55225 * 26 25 24 43 43 H 1.09004 * 109.46827 * 23.54858 * 26 25 24 44 44 H 1.08997 * 109.47062 * 143.55078 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1313 2.0675 -1.1796 5 1 1.4260 1.8892 -1.9777 6 6 3.1524 2.9924 -1.3494 7 7 4.1533 3.0318 -0.4957 8 14 3.1057 4.1813 -2.7895 9 1 1.8785 5.0132 -2.7050 10 1 4.3024 5.0595 -2.7453 11 1 3.0989 3.4168 -4.0625 12 6 2.3858 2.0282 1.2620 13 1 2.7131 3.0491 1.0651 14 6 3.5226 1.2467 1.9237 15 6 1.1731 2.0525 2.1947 16 7 0.0467 2.6962 1.5144 17 6 -1.1352 2.8311 2.1480 18 8 -1.2667 2.4181 3.2837 19 6 -2.2710 3.4808 1.4623 20 6 -2.0865 4.0788 0.2136 21 6 -3.1482 4.6885 -0.4192 22 6 -4.4004 4.6993 0.1766 23 9 -5.4391 5.2935 -0.4505 24 6 -4.5889 4.1076 1.4162 25 6 -3.5326 3.4995 2.0603 26 6 -3.7391 2.8562 3.4073 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.8667 3.6784 -0.6141 33 1 4.3865 1.2295 1.2593 34 1 3.7963 1.7284 2.8624 35 1 3.1952 0.2258 2.1206 36 1 1.4201 2.6113 3.0973 37 1 0.9005 1.0317 2.4627 38 1 0.1516 3.0261 0.6084 39 1 -1.1126 4.0677 -0.2530 40 1 -3.0058 5.1548 -1.3828 41 1 -5.5653 4.1227 1.8777 42 1 -3.4477 3.5545 4.1919 43 1 -4.7901 2.5932 3.5271 44 1 -3.1289 1.9557 3.4773 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156501928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:26 Heat of formation + Delta-G solvation = -39.904401 kcal Electronic energy + Delta-G solvation = -26422.685303 eV Core-core repulsion = 22676.063644 eV Total energy + Delta-G solvation = -3746.621659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.05036 -40.16240 -38.17066 -36.85056 -34.00982 -32.55623 -31.92427 -31.44913 -30.42964 -28.19913 -27.31763 -25.42929 -23.97917 -23.41070 -21.98816 -21.53282 -20.13490 -19.28159 -17.63592 -17.19775 -16.87857 -16.54021 -15.76770 -15.29289 -15.09655 -14.91659 -14.56741 -14.21969 -13.81459 -13.51620 -13.35262 -13.22324 -13.12206 -12.72301 -12.65376 -12.33852 -12.14146 -11.95565 -11.81021 -11.75998 -11.50417 -11.10003 -11.06967 -10.98869 -10.84285 -10.66492 -10.35902 -10.10550 -9.65734 -9.48703 -9.32324 -9.04665 -8.81857 -8.56259 -8.35085 -6.69196 -5.91795 -3.43386 0.70655 1.13186 2.94440 3.27524 3.34635 3.36218 3.65772 3.81493 4.06542 4.37071 4.58100 4.70617 4.98236 5.02087 5.23251 5.25139 5.36038 5.56003 5.71549 5.75158 5.83752 5.91535 5.97180 6.03329 6.09985 6.16172 6.22212 6.24166 6.35997 6.43969 6.49669 6.54449 6.61720 6.67219 6.75096 6.81811 6.88953 7.03460 7.13885 7.48032 7.57166 7.71752 8.08509 8.39779 8.65208 9.12766 9.73135 10.30262 11.14443 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013324 B = 0.004962 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.984797 B = 5641.055304 C = 6948.797341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.263 4.263 5 H 0.063 0.937 6 C 0.012 3.988 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.175 3.825 13 H 0.104 0.896 14 C -0.142 4.142 15 C 0.101 3.899 16 N -0.694 5.694 17 C 0.549 3.451 18 O -0.549 6.549 19 C -0.143 4.143 20 C -0.048 4.048 21 C -0.168 4.168 22 C 0.121 3.879 23 F -0.139 7.139 24 C -0.171 4.171 25 C 0.002 3.998 26 C -0.120 4.120 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.256 0.744 33 H 0.078 0.922 34 H 0.032 0.968 35 H 0.028 0.972 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.410 0.590 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.230 1.356 3.632 12.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.393 4.393 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.209 1.209 12 C 0.067 3.933 13 H 0.122 0.878 14 C -0.202 4.202 15 C -0.024 4.024 16 N -0.344 5.344 17 C 0.336 3.664 18 O -0.430 6.430 19 C -0.147 4.147 20 C -0.067 4.067 21 C -0.187 4.187 22 C 0.101 3.899 23 F -0.118 7.118 24 C -0.189 4.189 25 C 0.001 3.999 26 C -0.176 4.176 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.248 0.752 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.134 1.179 4.386 12.956 hybrid contribution -0.094 0.969 -1.508 1.795 sum -12.229 2.148 2.878 12.745 Atomic orbital electron populations 1.22459 1.00024 0.99043 1.01528 1.20757 0.91652 0.87452 0.98729 1.43877 1.76023 1.08225 1.02354 1.19062 1.08106 1.18654 0.93479 0.91896 1.25199 0.94730 1.01267 0.97630 1.69942 1.09680 1.36555 1.37398 0.86452 0.77042 0.80986 0.82697 1.20943 1.21649 1.20869 1.20550 0.88760 0.99940 0.84023 0.87810 1.22008 1.01068 0.97831 0.99269 1.22218 0.87767 0.96387 0.96019 1.45946 1.10619 1.58747 1.19095 1.18089 0.82829 0.79583 0.85918 1.90674 1.82961 1.51142 1.18254 1.20028 0.94647 1.03799 0.96191 1.21349 0.99294 0.93131 0.92944 1.21067 0.91377 1.04083 1.02158 1.17917 0.84363 0.95656 0.91954 1.91500 1.56897 1.81390 1.81972 1.20964 1.00554 1.02604 0.94813 1.19861 0.90782 0.93111 0.96186 1.21101 1.01604 1.02824 0.92037 0.93498 0.94859 0.92936 0.94152 0.94479 0.93428 0.90344 0.94869 0.95263 0.92766 0.92690 0.75222 0.83903 0.84188 0.84401 0.90389 0.92534 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 9.86 37.16 0.37 -2.65 16 2 C 0.14 2.76 5.65 -4.04 -0.02 2.73 16 3 N -0.58 -12.64 1.85 -165.66 -0.31 -12.94 16 4 C -0.26 -6.30 9.31 -15.06 -0.14 -6.44 16 5 H 0.06 1.51 7.86 -52.49 -0.41 1.10 16 6 C 0.01 0.29 4.96 -17.43 -0.09 0.20 16 7 N -0.89 -22.99 10.32 55.49 0.57 -22.42 16 8 Si 0.90 19.75 29.57 -169.99 -5.03 14.72 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.17 3.61 1.91 -67.93 -0.13 3.48 16 13 H 0.10 2.45 5.95 -51.93 -0.31 2.14 16 14 C -0.14 -2.84 9.04 37.16 0.34 -2.50 16 15 C 0.10 1.88 4.33 -4.04 -0.02 1.86 16 16 N -0.69 -12.14 3.89 -61.29 -0.24 -12.37 16 17 C 0.55 9.37 7.43 -12.38 -0.09 9.28 16 18 O -0.55 -10.34 13.35 5.31 0.07 -10.27 16 19 C -0.14 -2.13 5.87 -104.96 -0.62 -2.74 16 20 C -0.05 -0.66 9.52 -39.20 -0.37 -1.03 16 21 C -0.17 -2.07 10.01 -39.57 -0.40 -2.47 16 22 C 0.12 1.49 7.31 -39.27 -0.29 1.20 16 23 F -0.14 -1.72 17.26 2.25 0.04 -1.68 16 24 C -0.17 -2.02 9.64 -39.57 -0.38 -2.40 16 25 C 0.00 0.02 5.91 -104.24 -0.62 -0.59 16 26 C -0.12 -1.49 8.73 36.01 0.31 -1.17 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.95 4.95 -51.93 -0.26 0.69 16 30 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 31 H 0.04 0.70 6.48 -51.93 -0.34 0.37 16 32 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 33 H 0.08 1.78 7.36 -51.93 -0.38 1.40 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.03 0.54 6.69 -51.93 -0.35 0.19 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 1.04 7.08 -51.93 -0.37 0.67 16 38 H 0.41 7.29 6.00 -40.82 -0.24 7.05 16 39 H 0.14 1.91 6.46 -52.49 -0.34 1.57 16 40 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.56 8.04 -51.93 -0.42 0.14 16 44 H 0.10 1.48 5.86 -51.93 -0.30 1.17 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -25.84 353.00 -7.94 -33.79 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.23 Total: 9.09 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -2.14 Total: -3.23 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.03 Total: -47.73 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.07 Total: -10.27 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -25.84 -7.94 -33.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156501928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.117 kcal (2) G-P(sol) polarization free energy of solvation -25.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds