Wall clock time and date at job start Tue Mar 31 2020 09:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46905 * 2 1 4 4 C 1.36937 * 120.00069 * 275.91565 * 3 2 1 5 5 H 1.07991 * 119.99821 * 33.78049 * 4 3 2 6 6 C 1.38811 * 119.99840 * 213.78134 * 4 3 2 7 7 N 1.31617 * 120.00045 * 12.92767 * 6 4 3 8 8 Si 1.86802 * 119.99808 * 192.93132 * 6 4 3 9 9 H 1.48500 * 109.47190 * 60.00049 * 8 6 4 10 10 H 1.48498 * 109.46867 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47118 * 299.99448 * 8 6 4 12 12 C 1.46501 * 119.99889 * 95.91829 * 3 2 1 13 13 H 1.08999 * 109.47214 * 180.62241 * 12 3 2 14 14 C 1.53002 * 109.46966 * 60.61692 * 12 3 2 15 15 C 1.53003 * 109.46831 * 300.61944 * 12 3 2 16 16 N 1.46495 * 109.47115 * 305.00259 * 15 12 3 17 17 C 1.34777 * 119.99786 * 180.02562 * 16 15 12 18 18 O 1.21562 * 120.00420 * 359.97438 * 17 16 15 19 19 C 1.47727 * 120.00035 * 179.97438 * 17 16 15 20 20 C 1.39678 * 120.11577 * 353.37276 * 19 17 16 21 21 C 1.37810 * 119.87986 * 180.27525 * 20 19 17 22 22 C 1.38680 * 120.11917 * 359.46798 * 21 20 19 23 23 F 1.35101 * 119.88510 * 180.27687 * 22 21 20 24 24 C 1.38641 * 120.23407 * 0.55694 * 22 21 20 25 25 C 1.37851 * 120.12211 * 359.69739 * 24 22 21 26 26 C 1.50703 * 120.06361 * 180.02562 * 25 24 22 27 27 H 1.09000 * 109.47138 * 60.00279 * 1 2 3 28 28 H 1.08999 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46839 * 299.99369 * 1 2 3 30 30 H 1.08999 * 109.47050 * 240.00133 * 2 1 3 31 31 H 1.08998 * 109.47428 * 120.00438 * 2 1 3 32 32 H 0.97006 * 120.00191 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47118 * 60.00667 * 14 12 3 34 34 H 1.09005 * 109.46822 * 179.97438 * 14 12 3 35 35 H 1.09001 * 109.47285 * 299.99883 * 14 12 3 36 36 H 1.08998 * 109.47134 * 184.99573 * 15 12 3 37 37 H 1.09005 * 109.47057 * 65.00440 * 15 12 3 38 38 H 0.96993 * 120.00296 * 359.97438 * 16 15 12 39 39 H 1.07997 * 120.06013 * 359.97438 * 20 19 17 40 40 H 1.07996 * 119.94583 * 179.74739 * 21 20 19 41 41 H 1.08009 * 119.93370 * 179.72742 * 24 22 21 42 42 H 1.08996 * 109.47035 * 263.55225 * 26 25 24 43 43 H 1.09004 * 109.46827 * 23.54858 * 26 25 24 44 44 H 1.08997 * 109.47062 * 143.55078 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1313 2.0675 -1.1796 5 1 1.4260 1.8892 -1.9777 6 6 3.1524 2.9924 -1.3494 7 7 4.1533 3.0318 -0.4957 8 14 3.1057 4.1813 -2.7895 9 1 1.8785 5.0132 -2.7050 10 1 4.3024 5.0595 -2.7453 11 1 3.0989 3.4168 -4.0625 12 6 2.3858 2.0282 1.2620 13 1 2.7131 3.0491 1.0651 14 6 3.5226 1.2467 1.9237 15 6 1.1731 2.0525 2.1947 16 7 0.0467 2.6962 1.5144 17 6 -1.1352 2.8311 2.1480 18 8 -1.2667 2.4181 3.2837 19 6 -2.2710 3.4808 1.4623 20 6 -2.0865 4.0788 0.2136 21 6 -3.1482 4.6885 -0.4192 22 6 -4.4004 4.6993 0.1766 23 9 -5.4391 5.2935 -0.4505 24 6 -4.5889 4.1076 1.4162 25 6 -3.5326 3.4995 2.0603 26 6 -3.7391 2.8562 3.4073 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.8667 3.6784 -0.6141 33 1 4.3865 1.2295 1.2593 34 1 3.7963 1.7284 2.8624 35 1 3.1952 0.2258 2.1206 36 1 1.4201 2.6113 3.0973 37 1 0.9005 1.0317 2.4627 38 1 0.1516 3.0261 0.6084 39 1 -1.1126 4.0677 -0.2530 40 1 -3.0058 5.1548 -1.3828 41 1 -5.5653 4.1227 1.8777 42 1 -3.4477 3.5545 4.1919 43 1 -4.7901 2.5932 3.5271 44 1 -3.1289 1.9557 3.4773 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156501928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:25 Heat of formation + Delta-G solvation = -51.059889 kcal Electronic energy + Delta-G solvation = -26423.169041 eV Core-core repulsion = 22676.063644 eV Total energy + Delta-G solvation = -3747.105397 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.01745 -41.37704 -39.43121 -38.40115 -35.44469 -33.80465 -33.54355 -32.86403 -31.65585 -29.89091 -28.37572 -26.83374 -25.76504 -24.52867 -23.41794 -22.72790 -21.40806 -20.94313 -18.99742 -18.46041 -18.19233 -17.68834 -16.84257 -16.73269 -16.49912 -16.39857 -15.89902 -15.72304 -15.27438 -14.72786 -14.44391 -14.38804 -14.28755 -14.20823 -13.93062 -13.76051 -13.61630 -13.46162 -13.14102 -12.96581 -12.76268 -12.75203 -12.70393 -12.50928 -12.31198 -12.07985 -12.07093 -11.82612 -11.32294 -11.16374 -10.64526 -10.40647 -10.03870 -10.00807 -9.62858 -8.48354 -7.78916 -5.31553 -0.35795 0.15255 1.52252 1.55369 1.59540 1.77252 2.33396 2.56239 2.66838 3.08261 3.36393 3.61731 3.66232 3.73302 3.82069 4.06776 4.23470 4.29169 4.48102 4.60862 4.62648 4.69302 4.74176 4.79712 4.83823 4.85141 4.91416 4.96886 4.99610 5.02318 5.08940 5.09382 5.22803 5.24999 5.34201 5.46070 5.58071 5.62370 5.74554 5.76801 5.79025 5.92588 6.53132 6.70215 7.26268 7.30230 7.95349 8.47488 9.24527 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.013324 B = 0.004962 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.984797 B = 5641.055304 C = 6948.797341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 N -0.591 5.591 4 C -0.260 4.260 5 H 0.062 0.938 6 C -0.031 4.031 7 N -0.916 5.916 8 Si 0.951 3.049 9 H -0.272 1.272 10 H -0.302 1.302 11 H -0.285 1.285 12 C 0.181 3.819 13 H 0.075 0.925 14 C -0.134 4.134 15 C 0.115 3.885 16 N -0.695 5.695 17 C 0.549 3.451 18 O -0.570 6.570 19 C -0.162 4.162 20 C -0.052 4.052 21 C -0.166 4.166 22 C 0.122 3.878 23 F -0.137 7.137 24 C -0.161 4.161 25 C -0.004 4.004 26 C -0.115 4.115 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.044 0.956 32 H 0.248 0.752 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.041 0.959 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.408 0.592 39 H 0.140 0.860 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.445 1.539 3.476 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.014 3.986 3 N -0.313 5.313 4 C -0.391 4.391 5 H 0.079 0.921 6 C -0.228 4.228 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.229 1.229 11 H -0.211 1.211 12 C 0.073 3.927 13 H 0.093 0.907 14 C -0.193 4.193 15 C -0.010 4.010 16 N -0.345 5.345 17 C 0.338 3.662 18 O -0.452 6.452 19 C -0.165 4.165 20 C -0.071 4.071 21 C -0.185 4.185 22 C 0.102 3.898 23 F -0.115 7.115 24 C -0.180 4.180 25 C -0.005 4.005 26 C -0.171 4.171 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.246 0.754 39 H 0.158 0.842 40 H 0.176 0.824 41 H 0.183 0.817 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.377 1.352 4.227 15.046 hybrid contribution 0.536 0.883 -1.461 1.790 sum -13.841 2.236 2.766 14.290 Atomic orbital electron populations 1.22272 0.98166 1.00220 1.00908 1.20823 0.92940 0.86285 0.98570 1.43988 1.76164 1.09057 1.02123 1.19222 1.07465 1.18362 0.94007 0.92060 1.25734 0.94740 1.02804 0.99549 1.70089 1.10155 1.37013 1.38767 0.85612 0.76758 0.79299 0.80284 1.19744 1.22885 1.21126 1.20390 0.89775 0.98334 0.84165 0.90724 1.21873 0.99591 0.98669 0.99152 1.21926 0.87255 0.96449 0.95394 1.45901 1.10686 1.58945 1.18977 1.18422 0.83034 0.79089 0.85682 1.90667 1.83324 1.52069 1.19155 1.19945 0.94467 1.05129 0.96971 1.21324 0.99659 0.93457 0.92676 1.21242 0.91021 1.03494 1.02748 1.18010 0.84338 0.95349 0.92101 1.91513 1.56753 1.81300 1.81949 1.21182 1.01207 1.01239 0.94364 1.20007 0.90556 0.93345 0.96590 1.21035 1.02960 1.01565 0.91553 0.94137 0.92762 0.93427 0.95137 0.93775 0.94274 0.93404 0.93290 0.94041 0.92646 0.92819 0.75405 0.84241 0.82410 0.81679 0.90599 0.89673 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.29 9.86 71.98 0.71 -4.58 16 2 C 0.14 5.37 5.65 86.38 0.49 5.86 16 3 N -0.59 -25.61 1.85 -678.02 -1.25 -26.86 16 4 C -0.26 -12.45 9.31 84.03 0.78 -11.67 16 5 H 0.06 2.92 7.86 -2.92 -0.02 2.90 16 6 C -0.03 -1.53 4.96 84.86 0.42 -1.11 16 7 N -0.92 -48.12 10.32 21.65 0.22 -47.89 16 8 Si 0.95 40.76 29.57 68.60 2.03 42.78 16 9 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 10 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 C 0.18 7.51 1.91 44.99 0.09 7.60 16 13 H 0.07 3.60 5.95 -2.39 -0.01 3.59 16 14 C -0.13 -5.33 9.04 71.98 0.65 -4.68 16 15 C 0.12 4.24 4.33 86.38 0.37 4.62 16 16 N -0.70 -24.21 3.89 -466.09 -1.81 -26.02 16 17 C 0.55 18.55 7.43 86.75 0.64 19.19 16 18 O -0.57 -21.31 13.35 -3.91 -0.05 -21.36 16 19 C -0.16 -4.64 5.87 -20.09 -0.12 -4.76 16 20 C -0.05 -1.36 9.52 22.52 0.21 -1.14 16 21 C -0.17 -3.74 10.01 22.27 0.22 -3.51 16 22 C 0.12 2.67 7.31 22.47 0.16 2.83 16 23 F -0.14 -2.97 17.26 44.97 0.78 -2.19 16 24 C -0.16 -3.35 9.64 22.27 0.21 -3.13 16 25 C 0.00 -0.09 5.91 -19.62 -0.12 -0.21 16 26 C -0.12 -2.66 8.73 71.24 0.62 -2.04 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.66 4.95 -2.39 -0.01 1.65 16 30 H 0.03 1.22 8.09 -2.39 -0.02 1.20 16 31 H 0.04 1.63 6.48 -2.39 -0.02 1.61 16 32 H 0.25 12.99 8.31 -92.70 -0.77 12.21 16 33 H 0.05 2.20 7.36 -2.39 -0.02 2.18 16 34 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.04 1.51 6.69 -2.39 -0.02 1.50 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.99 7.08 -2.38 -0.02 1.98 16 38 H 0.41 14.53 6.00 -92.71 -0.56 13.98 16 39 H 0.14 3.65 6.46 -2.91 -0.02 3.63 16 40 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 43 H 0.08 1.44 8.04 -2.39 -0.02 1.42 16 44 H 0.08 2.21 5.86 -2.39 -0.01 2.20 16 Total: -1.00 -54.76 353.00 5.74 -49.02 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.46 Total: 29.26 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 5.36 Total: 3.27 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -2.84 Total: -100.78 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.05 Total: -21.36 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.78 kcal Total: -54.76 5.74 -49.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156501928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.042 kcal (2) G-P(sol) polarization free energy of solvation -54.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds