Wall clock time and date at job start Tue Mar 31 2020 09:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46753 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00051 * 2 1 3 5 5 C 1.52997 * 109.46947 * 184.99869 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47216 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 119.99848 * 10 8 6 13 13 H 1.48501 * 109.47057 * 239.99829 * 10 8 6 14 14 N 1.46900 * 109.46845 * 239.99882 * 2 1 3 15 15 C 1.46906 * 111.00040 * 85.00043 * 14 2 1 16 16 C 1.52994 * 109.47254 * 180.02562 * 15 14 2 17 17 N 1.46495 * 109.47183 * 180.02562 * 16 15 14 18 18 C 1.34777 * 119.99779 * 180.02562 * 17 16 15 19 19 O 1.21564 * 120.00344 * 359.97438 * 18 17 16 20 20 C 1.47730 * 119.99718 * 179.97438 * 18 17 16 21 21 C 1.39649 * 120.11832 * 359.72427 * 20 18 17 22 22 C 1.37842 * 119.87708 * 179.74488 * 21 20 18 23 23 C 1.38650 * 120.12035 * 0.50878 * 22 21 20 24 24 F 1.35102 * 119.88349 * 179.74412 * 23 22 21 25 25 C 1.38659 * 120.23831 * 359.76390 * 23 22 21 26 26 C 1.37834 * 120.12007 * 359.97438 * 25 23 22 27 27 H 1.08993 * 109.46824 * 299.99940 * 1 2 3 28 28 H 1.08992 * 109.47388 * 60.00185 * 1 2 3 29 29 H 1.09009 * 109.46555 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47372 * 65.00179 * 4 2 1 31 31 H 1.09004 * 109.47108 * 304.99923 * 4 2 1 32 32 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 33 33 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 34 34 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 35 35 H 1.00901 * 111.00620 * 321.04668 * 14 2 1 36 36 H 1.09006 * 109.46766 * 299.99489 * 15 14 2 37 37 H 1.08994 * 109.46966 * 59.99635 * 15 14 2 38 38 H 1.09005 * 109.47102 * 299.99848 * 16 15 14 39 39 H 1.09003 * 109.47452 * 59.99307 * 16 15 14 40 40 H 0.96995 * 120.00205 * 359.97438 * 17 16 15 41 41 H 1.07999 * 120.06359 * 359.97213 * 21 20 18 42 42 H 1.08001 * 119.93761 * 180.24521 * 22 21 20 43 43 H 1.08003 * 119.93916 * 179.97438 * 25 23 22 44 44 H 1.07992 * 120.06164 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3232 2.5444 7 1 3.3688 -1.8036 3.2135 8 6 5.4184 -1.3592 2.8162 9 7 6.2689 -0.7736 2.0016 10 14 6.0412 -2.2397 4.3414 11 1 4.8913 -2.8113 5.0872 12 1 6.9638 -3.3320 3.9404 13 1 6.7635 -1.2754 5.2095 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3470 16 6 2.5949 -0.5332 -3.5745 17 7 2.6581 0.3795 -4.7187 18 6 3.0836 -0.0695 -5.9161 19 8 3.4154 -1.2317 -6.0467 20 6 3.1467 0.8508 -7.0700 21 6 2.7608 2.1849 -6.9243 22 6 2.8267 3.0406 -8.0030 23 6 3.2652 2.5762 -9.2336 24 9 3.3230 3.4178 -10.2889 25 6 3.6443 1.2511 -9.3853 26 6 3.5874 0.3882 -8.3119 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 1.7518 -1.7715 1.2056 31 1 1.6055 -0.2617 2.1370 32 1 3.8532 0.4370 1.3572 33 1 3.9995 -1.0727 0.4258 34 1 7.2196 -0.7994 2.1927 35 1 1.4496 -1.4980 -1.4101 36 1 1.0870 0.6162 -2.5526 37 1 2.7588 1.0461 -2.1183 38 1 3.5903 -0.9273 -3.3692 39 1 1.9182 -1.3566 -3.8030 40 1 2.3930 1.3067 -4.6147 41 1 2.4147 2.5466 -5.9673 42 1 2.5322 4.0735 -7.8904 43 1 3.9847 0.8944 -10.3462 44 1 3.8824 -0.6437 -8.4312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:35 Heat of formation + Delta-G solvation = -71.732027 kcal Electronic energy + Delta-G solvation = -23790.311500 eV Core-core repulsion = 20042.309692 eV Total energy + Delta-G solvation = -3748.001808 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.41218 -40.45853 -38.52617 -37.45340 -35.22981 -33.24897 -32.08063 -31.54776 -30.94936 -29.23650 -27.23659 -25.06906 -24.05586 -23.46193 -22.17963 -21.39682 -20.79164 -19.82762 -18.57912 -17.72430 -16.94644 -16.13538 -16.11282 -15.94050 -15.79002 -15.40759 -14.98223 -14.73191 -14.41808 -14.27539 -14.11329 -13.79654 -13.61436 -13.11368 -13.07070 -12.78663 -12.58473 -12.41132 -12.07888 -11.85045 -11.54131 -11.44743 -11.28842 -11.15537 -10.85019 -10.42396 -10.32384 -10.15163 -9.69100 -9.65336 -9.37541 -9.23207 -9.11769 -8.89886 -8.24261 -7.99332 -5.88453 -3.89558 0.23692 0.70680 2.43684 2.84126 3.34885 3.36752 3.44138 3.47998 3.67558 4.15033 4.29938 4.33467 4.51627 4.54476 4.68783 4.78861 4.94151 5.10184 5.27910 5.28616 5.38607 5.47181 5.48043 5.49270 5.54669 5.61260 5.65053 5.76486 5.89241 5.95545 6.08488 6.18668 6.22428 6.28854 6.35333 6.63246 6.85752 7.21625 7.27629 7.40567 7.69242 7.84660 7.96475 8.06972 8.22512 8.57483 9.19614 9.73280 11.22653 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.002110 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.291897 B =13265.329391 C =13983.646564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 H 0.073 0.927 4 C -0.099 4.099 5 C 0.029 3.971 6 C -0.518 4.518 7 H 0.051 0.949 8 C 0.055 3.945 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.667 5.667 15 C 0.051 3.949 16 C 0.119 3.881 17 N -0.722 5.722 18 C 0.558 3.442 19 O -0.531 6.531 20 C -0.143 4.143 21 C -0.057 4.057 22 C -0.161 4.161 23 C 0.121 3.879 24 F -0.135 7.135 25 C -0.161 4.161 26 C -0.030 4.030 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.006 0.994 33 H 0.033 0.967 34 H 0.257 0.743 35 H 0.338 0.662 36 H 0.028 0.972 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.398 0.602 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.052 8.478 -22.179 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.023 4.023 3 H 0.091 0.909 4 C -0.137 4.137 5 C -0.008 4.008 6 C -0.556 4.556 7 H 0.070 0.930 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.298 5.298 15 C -0.079 4.079 16 C -0.005 4.005 17 N -0.374 5.374 18 C 0.345 3.655 19 O -0.409 6.409 20 C -0.146 4.146 21 C -0.076 4.076 22 C -0.179 4.179 23 C 0.102 3.898 24 F -0.114 7.114 25 C -0.180 4.180 26 C -0.049 4.049 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.025 0.975 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.156 0.844 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.233 0.767 41 H 0.155 0.845 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.963 7.768 -22.128 25.481 hybrid contribution -0.633 0.360 0.516 0.892 sum -10.596 8.129 -21.612 25.405 Atomic orbital electron populations 1.22545 0.98501 1.01673 1.01294 1.21746 0.90947 0.98355 0.91302 0.90920 1.21641 1.00675 0.98467 0.92929 1.19007 0.88240 0.96481 0.97114 1.21382 0.91869 1.33978 1.08416 0.93035 1.25006 0.97167 0.95796 0.96542 1.69990 1.02126 1.44426 1.36910 0.86621 0.78824 0.79539 0.83488 1.19885 1.21102 1.21202 1.60386 1.58038 1.08859 1.02540 1.22077 0.99040 0.96419 0.90399 1.21381 1.03450 0.92050 0.83584 1.45819 1.67330 1.14394 1.09845 1.18087 0.77481 0.87399 0.82581 1.90816 1.48073 1.17771 1.84192 1.20074 1.05306 0.94266 0.94955 1.21198 0.95762 0.91918 0.98709 1.21099 1.03656 1.01622 0.91569 1.17992 0.99479 0.88138 0.84198 1.91532 1.93804 1.70635 1.55405 1.21176 1.03891 0.91917 1.01015 1.21182 0.93105 1.00535 0.90104 0.92127 0.93784 0.92668 0.93360 0.93405 0.97527 0.94893 0.93292 0.84409 0.95409 0.90309 0.89658 0.91409 0.76661 0.84457 0.83945 0.83888 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.16 37.16 0.34 -1.91 16 2 C 0.09 1.35 2.59 -67.71 -0.18 1.17 16 3 H 0.07 1.18 7.80 -51.93 -0.41 0.77 16 4 C -0.10 -1.99 4.83 -26.73 -0.13 -2.12 16 5 C 0.03 0.74 4.86 -27.88 -0.14 0.61 16 6 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 7 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 10 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 N -0.67 -9.95 5.70 -106.72 -0.61 -10.56 16 15 C 0.05 0.60 5.60 -3.82 -0.02 0.58 16 16 C 0.12 1.42 5.93 -4.05 -0.02 1.40 16 17 N -0.72 -7.19 5.51 -61.29 -0.34 -7.53 16 18 C 0.56 6.58 7.77 -12.38 -0.10 6.48 16 19 O -0.53 -8.35 16.34 5.31 0.09 -8.27 16 20 C -0.14 -1.30 5.87 -104.96 -0.62 -1.92 16 21 C -0.06 -0.38 9.54 -39.20 -0.37 -0.76 16 22 C -0.16 -1.05 10.01 -39.57 -0.40 -1.44 16 23 C 0.12 0.93 7.31 -39.27 -0.29 0.64 16 24 F -0.14 -1.13 17.26 2.25 0.04 -1.09 16 25 C -0.16 -1.17 10.01 -39.57 -0.40 -1.57 16 26 C -0.03 -0.26 9.59 -39.20 -0.38 -0.64 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.48 7.45 -51.93 -0.39 0.09 16 29 H 0.05 0.66 8.13 -51.92 -0.42 0.24 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.34 4.56 8.47 -39.29 -0.33 4.23 16 36 H 0.03 0.28 7.44 -51.93 -0.39 -0.11 16 37 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16 38 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.40 2.73 6.50 -40.82 -0.27 2.47 16 41 H 0.14 0.57 6.40 -52.49 -0.34 0.23 16 42 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 43 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.15 1.25 7.65 -52.49 -0.40 0.85 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -34.02 373.26 -9.26 -43.27 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.68 Total: 1.39 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -3.10 Total: -13.19 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.21 Total: -44.82 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.02 -9.26 -43.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.459 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds