Wall clock time and date at job start Tue Mar 31 2020 09:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46753 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00051 * 2 1 3 5 5 C 1.52997 * 109.46947 * 184.99869 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47216 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47389 * 119.99848 * 10 8 6 13 13 H 1.48501 * 109.47057 * 239.99829 * 10 8 6 14 14 N 1.46900 * 109.46845 * 239.99882 * 2 1 3 15 15 C 1.46906 * 111.00040 * 85.00043 * 14 2 1 16 16 C 1.52994 * 109.47254 * 180.02562 * 15 14 2 17 17 N 1.46495 * 109.47183 * 180.02562 * 16 15 14 18 18 C 1.34777 * 119.99779 * 180.02562 * 17 16 15 19 19 O 1.21564 * 120.00344 * 359.97438 * 18 17 16 20 20 C 1.47730 * 119.99718 * 179.97438 * 18 17 16 21 21 C 1.39649 * 120.11832 * 359.72427 * 20 18 17 22 22 C 1.37842 * 119.87708 * 179.74488 * 21 20 18 23 23 C 1.38650 * 120.12035 * 0.50878 * 22 21 20 24 24 F 1.35102 * 119.88349 * 179.74412 * 23 22 21 25 25 C 1.38659 * 120.23831 * 359.76390 * 23 22 21 26 26 C 1.37834 * 120.12007 * 359.97438 * 25 23 22 27 27 H 1.08993 * 109.46824 * 299.99940 * 1 2 3 28 28 H 1.08992 * 109.47388 * 60.00185 * 1 2 3 29 29 H 1.09009 * 109.46555 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47372 * 65.00179 * 4 2 1 31 31 H 1.09004 * 109.47108 * 304.99923 * 4 2 1 32 32 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 33 33 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 34 34 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 35 35 H 1.00901 * 111.00620 * 321.04668 * 14 2 1 36 36 H 1.09006 * 109.46766 * 299.99489 * 15 14 2 37 37 H 1.08994 * 109.46966 * 59.99635 * 15 14 2 38 38 H 1.09005 * 109.47102 * 299.99848 * 16 15 14 39 39 H 1.09003 * 109.47452 * 59.99307 * 16 15 14 40 40 H 0.96995 * 120.00205 * 359.97438 * 17 16 15 41 41 H 1.07999 * 120.06359 * 359.97213 * 21 20 18 42 42 H 1.08001 * 119.93761 * 180.24521 * 22 21 20 43 43 H 1.08003 * 119.93916 * 179.97438 * 25 23 22 44 44 H 1.07992 * 120.06164 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3232 2.5444 7 1 3.3688 -1.8036 3.2135 8 6 5.4184 -1.3592 2.8162 9 7 6.2689 -0.7736 2.0016 10 14 6.0412 -2.2397 4.3414 11 1 4.8913 -2.8113 5.0872 12 1 6.9638 -3.3320 3.9404 13 1 6.7635 -1.2754 5.2095 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3470 16 6 2.5949 -0.5332 -3.5745 17 7 2.6581 0.3795 -4.7187 18 6 3.0836 -0.0695 -5.9161 19 8 3.4154 -1.2317 -6.0467 20 6 3.1467 0.8508 -7.0700 21 6 2.7608 2.1849 -6.9243 22 6 2.8267 3.0406 -8.0030 23 6 3.2652 2.5762 -9.2336 24 9 3.3230 3.4178 -10.2889 25 6 3.6443 1.2511 -9.3853 26 6 3.5874 0.3882 -8.3119 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 1.7518 -1.7715 1.2056 31 1 1.6055 -0.2617 2.1370 32 1 3.8532 0.4370 1.3572 33 1 3.9995 -1.0727 0.4258 34 1 7.2196 -0.7994 2.1927 35 1 1.4496 -1.4980 -1.4101 36 1 1.0870 0.6162 -2.5526 37 1 2.7588 1.0461 -2.1183 38 1 3.5903 -0.9273 -3.3692 39 1 1.9182 -1.3566 -3.8030 40 1 2.3930 1.3067 -4.6147 41 1 2.4147 2.5466 -5.9673 42 1 2.5322 4.0735 -7.8904 43 1 3.9847 0.8944 -10.3462 44 1 3.8824 -0.6437 -8.4312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:34 Heat of formation + Delta-G solvation = -94.365331 kcal Electronic energy + Delta-G solvation = -23791.292954 eV Core-core repulsion = 20042.309692 eV Total energy + Delta-G solvation = -3748.983262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.02441 -41.28308 -39.28645 -38.64668 -36.36376 -35.16611 -33.35172 -32.21353 -31.90352 -30.74356 -28.23427 -26.95459 -24.84166 -24.07751 -23.31459 -22.94103 -21.68998 -21.29297 -19.27677 -18.43772 -18.34759 -17.68296 -16.93995 -16.78472 -16.66387 -16.50709 -16.21164 -15.96865 -15.74199 -15.24994 -14.91331 -14.58005 -14.56331 -14.25513 -14.14238 -13.97614 -13.79264 -13.62782 -13.28329 -13.14188 -12.89118 -12.85924 -12.63116 -12.33944 -12.27438 -12.08547 -11.77336 -11.50823 -11.22445 -11.17719 -10.93545 -10.47983 -10.29170 -10.23618 -9.81365 -9.14406 -8.13231 -6.23164 -0.42083 0.15886 1.39991 1.40826 1.53602 1.65272 1.96476 2.44202 2.65290 3.09869 3.19310 3.36040 3.62850 3.65807 3.82327 3.93957 4.07638 4.12912 4.14886 4.23093 4.38097 4.48866 4.51055 4.72095 4.81277 4.85028 4.89959 4.90084 4.99469 5.02368 5.06867 5.09203 5.14098 5.19574 5.30884 5.32865 5.49348 5.61020 5.70916 5.90790 6.04858 6.24458 6.36252 6.43860 6.61366 6.97646 7.10299 7.45018 8.98123 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.002110 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.291897 B =13265.329391 C =13983.646564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 H 0.066 0.934 4 C -0.091 4.091 5 C 0.037 3.963 6 C -0.541 4.541 7 H 0.055 0.945 8 C -0.004 4.004 9 N -0.933 5.933 10 Si 0.960 3.040 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.278 1.278 14 N -0.695 5.695 15 C 0.061 3.939 16 C 0.128 3.872 17 N -0.707 5.707 18 C 0.555 3.445 19 O -0.581 6.581 20 C -0.159 4.159 21 C -0.048 4.048 22 C -0.156 4.156 23 C 0.114 3.886 24 F -0.139 7.139 25 C -0.160 4.160 26 C -0.042 4.042 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.051 0.949 32 H -0.022 1.022 33 H 0.003 0.997 34 H 0.260 0.740 35 H 0.346 0.654 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.416 0.584 41 H 0.166 0.834 42 H 0.169 0.831 43 H 0.159 0.841 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.773 9.660 -22.045 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.016 4.016 3 H 0.084 0.916 4 C -0.129 4.129 5 C 0.000 4.000 6 C -0.579 4.579 7 H 0.074 0.926 8 C -0.201 4.201 9 N -0.574 5.574 10 Si 0.785 3.215 11 H -0.186 1.186 12 H -0.207 1.207 13 H -0.204 1.204 14 N -0.327 5.327 15 C -0.068 4.068 16 C 0.003 3.997 17 N -0.360 5.360 18 C 0.344 3.656 19 O -0.462 6.462 20 C -0.162 4.162 21 C -0.066 4.066 22 C -0.174 4.174 23 C 0.094 3.906 24 F -0.118 7.118 25 C -0.179 4.179 26 C -0.061 4.061 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.069 0.931 32 H -0.003 1.003 33 H 0.022 0.978 34 H 0.069 0.931 35 H 0.165 0.835 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.254 0.746 41 H 0.184 0.816 42 H 0.186 0.814 43 H 0.177 0.823 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.717 8.989 -21.989 26.488 hybrid contribution -0.066 0.029 0.422 0.428 sum -11.783 9.018 -21.567 26.178 Atomic orbital electron populations 1.22396 0.95175 1.02513 1.02719 1.21501 0.93407 0.97052 0.89595 0.91570 1.21482 0.96407 0.99170 0.95806 1.18842 0.92345 0.93900 0.94917 1.21869 0.92447 1.34169 1.09414 0.92643 1.25960 0.97514 0.96592 0.99998 1.70129 1.02516 1.45780 1.38985 0.85474 0.78404 0.78287 0.79315 1.18612 1.20653 1.20413 1.60228 1.58990 1.10030 1.03482 1.21983 1.00530 0.95384 0.88911 1.21133 1.01423 0.92615 0.84488 1.45646 1.66588 1.15011 1.08784 1.18545 0.76473 0.87156 0.83449 1.90787 1.50387 1.19975 1.85009 1.19968 1.07253 0.95003 0.94009 1.21446 0.94530 0.90567 1.00057 1.21389 1.02526 1.02753 0.90745 1.18206 0.99579 0.88165 0.84601 1.91525 1.93846 1.70695 1.55715 1.21297 1.03500 0.91806 1.01296 1.21201 0.93714 1.00575 0.90572 0.91666 0.91375 0.92132 0.93525 0.93061 1.00320 0.97846 0.93102 0.83544 0.92084 0.91076 0.93225 0.91386 0.74566 0.81641 0.81392 0.82311 0.84228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.70 9.16 71.98 0.66 -3.04 16 2 C 0.09 2.85 2.59 44.92 0.12 2.97 16 3 H 0.07 2.09 7.80 -2.39 -0.02 2.07 16 4 C -0.09 -3.64 4.83 30.59 0.15 -3.49 16 5 C 0.04 1.99 4.86 29.85 0.15 2.13 16 6 C -0.54 -31.65 9.11 25.60 0.23 -31.42 16 7 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 8 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 9 N -0.93 -58.62 13.29 21.45 0.28 -58.33 16 10 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 N -0.70 -20.41 5.70 -491.56 -2.80 -23.21 16 15 C 0.06 1.38 5.60 86.30 0.48 1.86 16 16 C 0.13 3.08 5.93 86.38 0.51 3.59 16 17 N -0.71 -13.57 5.51 -466.10 -2.57 -16.14 16 18 C 0.56 13.23 7.77 86.75 0.67 13.90 16 19 O -0.58 -19.19 16.34 -3.92 -0.06 -19.26 16 20 C -0.16 -2.81 5.87 -20.09 -0.12 -2.93 16 21 C -0.05 -0.53 9.54 22.52 0.21 -0.31 16 22 C -0.16 -1.62 10.01 22.27 0.22 -1.39 16 23 C 0.11 1.55 7.31 22.47 0.16 1.71 16 24 F -0.14 -2.09 17.26 44.97 0.78 -1.31 16 25 C -0.16 -2.20 10.01 22.27 0.22 -1.98 16 26 C -0.04 -0.72 9.59 22.52 0.22 -0.50 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.19 7.45 -2.39 -0.02 1.18 16 29 H 0.06 1.28 8.13 -2.38 -0.02 1.26 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 32 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 33 H 0.00 0.18 7.75 -2.39 -0.02 0.16 16 34 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.35 9.04 8.47 -89.69 -0.76 8.28 16 36 H 0.06 1.00 7.44 -2.38 -0.02 0.99 16 37 H 0.07 1.72 8.05 -2.39 -0.02 1.70 16 38 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.42 4.80 6.50 -92.71 -0.60 4.20 16 41 H 0.17 0.78 6.40 -2.91 -0.02 0.77 16 42 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 43 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.14 2.56 7.65 -2.91 -0.02 2.53 16 Total: -1.00 -76.29 373.26 1.66 -74.63 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -0.35 Total: 14.66 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.36 Total: -18.66 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -5.08 Total: -97.68 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.06 Total: -19.26 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.78 Total: -1.31 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -76.29 1.66 -74.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.734 kcal (2) G-P(sol) polarization free energy of solvation -76.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds