Wall clock time and date at job start Tue Mar 31 2020 09:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.53002 * 109.47063 * 240.00410 * 2 1 3 5 5 C 1.50709 * 109.47142 * 64.99465 * 4 2 1 6 6 O 1.21280 * 119.99660 * 0.02562 * 5 4 2 7 7 N 1.34773 * 119.99817 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99799 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47125 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.47057 * 180.02562 * 9 8 7 11 11 N 1.46493 * 109.47205 * 180.02562 * 10 9 8 12 12 C 1.36941 * 120.00452 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99275 * 359.97438 * 12 11 10 14 14 C 1.38807 * 120.00181 * 180.02562 * 12 11 10 15 15 N 1.31621 * 120.00206 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47401 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47383 * 119.99560 * 16 14 12 19 19 H 1.48498 * 109.47188 * 239.99492 * 16 14 12 20 20 C 1.50696 * 109.47430 * 120.00564 * 2 1 3 21 21 C 1.38248 * 119.97128 * 239.99664 * 20 2 1 22 22 C 1.38196 * 120.02483 * 179.97438 * 21 20 2 23 23 C 1.38458 * 119.97492 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.02786 * 179.97438 * 23 22 21 25 25 C 1.38465 * 119.94675 * 0.24873 * 23 22 21 26 26 C 1.38197 * 119.97511 * 359.47283 * 25 23 22 27 27 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46818 * 299.99522 * 1 2 3 29 29 H 1.09001 * 109.47810 * 59.99492 * 1 2 3 30 30 H 1.08998 * 109.47740 * 184.99766 * 4 2 1 31 31 H 1.08999 * 109.47080 * 305.00066 * 4 2 1 32 32 H 0.97002 * 120.00162 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.47620 * 300.00991 * 8 7 5 34 34 H 1.09002 * 109.47077 * 60.00608 * 8 7 5 35 35 H 1.08994 * 109.47093 * 300.00079 * 9 8 7 36 36 H 1.08999 * 109.47080 * 60.00697 * 9 8 7 37 37 H 1.09006 * 109.47127 * 299.99979 * 10 9 8 38 38 H 1.08999 * 109.47024 * 60.00151 * 10 9 8 39 39 H 0.97003 * 120.00109 * 359.97438 * 11 10 9 40 40 H 0.97006 * 119.99893 * 180.02562 * 15 14 12 41 41 H 1.08001 * 119.98881 * 0.02562 * 21 20 2 42 42 H 1.07995 * 120.01604 * 180.02562 * 22 21 20 43 43 H 1.08007 * 120.01064 * 179.75151 * 25 23 22 44 44 H 1.07994 * 119.98821 * 180.29814 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6411 0.0572 -2.4767 6 8 1.0115 1.0875 -2.3632 7 7 1.9851 -0.3912 -3.7002 8 6 1.5969 0.3651 -4.8933 9 6 2.1070 -0.3560 -6.1426 10 6 1.7022 0.4343 -7.3886 11 7 2.1900 -0.2564 -8.5848 12 6 1.9452 0.2678 -9.8260 13 1 1.3920 1.1902 -9.9229 14 6 2.4070 -0.3870 -10.9595 15 7 3.0807 -1.5116 -10.8413 16 14 2.0736 0.3285 -12.6525 17 1 1.3025 1.5900 -12.5137 18 1 3.3627 0.6083 -13.3343 19 1 1.2899 -0.6443 -13.4554 20 6 2.0323 -0.7105 1.2303 21 6 2.8272 -0.0381 2.1400 22 6 3.2881 -0.6885 3.2689 23 6 2.9540 -2.0141 3.4885 24 9 3.4044 -2.6510 4.5915 25 6 2.1625 -2.6881 2.5739 26 6 1.6980 -2.0340 1.4486 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5139 -0.8899 30 1 3.1262 -0.7994 -1.2058 31 1 1.6053 -1.7197 -1.2953 32 1 2.4891 -1.2151 -3.7909 33 1 0.5106 0.4426 -4.9370 34 1 2.0308 1.3640 -4.8474 35 1 3.1933 -0.4337 -6.0991 36 1 1.6728 -1.3547 -6.1884 37 1 0.6158 0.5124 -7.4323 38 1 2.1367 1.4329 -7.3426 39 1 2.6866 -1.0852 -8.4978 40 1 3.4038 -1.9689 -11.6334 41 1 3.0874 0.9960 1.9687 42 1 3.9087 -0.1630 3.9796 43 1 1.9045 -3.7233 2.7421 44 1 1.0767 -2.5581 0.7375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176830565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:56 Heat of formation + Delta-G solvation = -68.608509 kcal Electronic energy + Delta-G solvation = -23558.510356 eV Core-core repulsion = 19810.643994 eV Total energy + Delta-G solvation = -3747.866362 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.25601 -40.35119 -39.33776 -36.25046 -35.12284 -34.33679 -32.05949 -31.58325 -30.18488 -29.44184 -27.95591 -25.18003 -23.95061 -23.36747 -22.56173 -21.26039 -20.93119 -19.94031 -18.13008 -17.47093 -16.97244 -16.66259 -16.03313 -15.94303 -15.88442 -15.63581 -14.95992 -14.68725 -14.56939 -14.11191 -13.90969 -13.75973 -13.55376 -13.35335 -13.28725 -13.02842 -12.72274 -12.44943 -12.23281 -11.68482 -11.64286 -11.46560 -11.39508 -11.03817 -10.98136 -10.94194 -10.79048 -10.64321 -10.07472 -9.84589 -9.70164 -9.54011 -9.07117 -8.94915 -8.90498 -6.95576 -5.79436 -3.08398 0.70770 0.79986 2.55219 3.04794 3.20952 3.42214 3.48075 3.50285 3.86083 4.23030 4.25335 4.47150 4.54322 4.57390 4.70262 4.81624 4.84329 4.96663 5.08366 5.17627 5.27420 5.30483 5.39210 5.48453 5.55570 5.57443 5.60419 5.69524 5.71639 5.78349 5.86268 5.95711 6.03748 6.11905 6.16443 6.20183 6.29591 6.43986 6.47643 6.76300 6.80572 7.43463 7.68819 8.15140 8.39565 9.50797 10.07789 10.42332 11.43614 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.036094 B = 0.001699 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.559911 B =16472.589111 C =16896.539661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.034 4.034 3 H 0.089 0.911 4 C -0.136 4.136 5 C 0.511 3.489 6 O -0.540 6.540 7 N -0.728 5.728 8 C 0.122 3.878 9 C -0.138 4.138 10 C 0.156 3.844 11 N -0.734 5.734 12 C -0.240 4.240 13 H 0.072 0.928 14 C -0.015 4.015 15 N -0.934 5.934 16 Si 0.908 3.092 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.084 4.084 21 C -0.086 4.086 22 C -0.152 4.152 23 C 0.090 3.910 24 F -0.142 7.142 25 C -0.151 4.151 26 C -0.086 4.086 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 -1.573 30.422 30.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.053 4.053 3 H 0.108 0.892 4 C -0.176 4.176 5 C 0.297 3.703 6 O -0.417 6.417 7 N -0.380 5.380 8 C -0.002 4.002 9 C -0.176 4.176 10 C 0.028 3.972 11 N -0.378 5.378 12 C -0.371 4.371 13 H 0.090 0.910 14 C -0.211 4.211 15 N -0.583 5.583 16 Si 0.740 3.260 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.085 4.085 21 C -0.104 4.104 22 C -0.170 4.170 23 C 0.071 3.929 24 F -0.121 7.121 25 C -0.170 4.170 26 C -0.104 4.104 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.235 0.765 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.539 -0.727 30.396 30.443 hybrid contribution 0.459 -0.593 -0.781 1.083 sum -1.080 -1.320 29.615 29.664 Atomic orbital electron populations 1.21984 0.93412 1.01848 1.03525 1.19875 0.96944 0.99233 0.89267 0.89233 1.21780 1.03203 1.00262 0.92348 1.20584 0.79333 0.85781 0.84619 1.90678 1.39849 1.24567 1.86634 1.46129 1.57719 1.27983 1.06145 1.21356 1.00323 0.95416 0.83079 1.21944 1.01579 1.00168 0.93897 1.20524 0.96711 0.94481 0.85497 1.42345 1.66734 1.28030 1.00708 1.19300 1.28959 1.05206 0.83649 0.91017 1.24757 1.00924 0.97466 0.97950 1.69672 1.42386 1.17926 1.28320 0.86091 0.77374 0.78110 0.84473 1.20499 1.21832 1.21838 1.20004 0.97579 0.94214 0.96673 1.20994 0.96322 1.00203 0.92910 1.21160 1.02802 0.93362 0.99705 1.17757 0.98648 0.91505 0.84977 1.91503 1.87545 1.81987 1.51064 1.21164 0.99728 1.01093 0.95015 1.20908 0.98763 0.94093 0.96605 0.93044 0.92675 0.89946 0.88655 0.88698 0.76522 0.91391 0.91389 0.91322 0.91317 0.96067 0.96063 0.78312 0.93550 0.84858 0.84766 0.84746 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.75 37.15 0.32 -0.92 16 2 C -0.03 -0.26 2.21 -91.78 -0.20 -0.46 16 3 H 0.09 0.76 7.69 -51.93 -0.40 0.36 16 4 C -0.14 -0.97 4.91 -27.88 -0.14 -1.11 16 5 C 0.51 5.50 7.55 -10.98 -0.08 5.41 16 6 O -0.54 -7.74 13.97 5.56 0.08 -7.66 16 7 N -0.73 -7.56 5.56 -60.29 -0.33 -7.90 16 8 C 0.12 1.57 5.67 -4.04 -0.02 1.55 16 9 C -0.14 -2.03 5.44 -26.73 -0.15 -2.18 16 10 C 0.16 3.07 6.26 -4.04 -0.03 3.04 16 11 N -0.73 -18.53 5.60 -59.91 -0.34 -18.86 16 12 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 13 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 14 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 15 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 16 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 C -0.08 -0.58 4.78 -104.62 -0.50 -1.09 16 21 C -0.09 -0.58 9.67 -39.59 -0.38 -0.96 16 22 C -0.15 -1.06 10.03 -39.52 -0.40 -1.46 16 23 C 0.09 0.72 7.30 -39.42 -0.29 0.44 16 24 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 25 C -0.15 -1.05 10.03 -39.51 -0.40 -1.44 16 26 C -0.09 -0.55 8.76 -39.59 -0.35 -0.90 16 27 H 0.05 0.36 7.39 -51.93 -0.38 -0.02 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.88 5.95 -51.93 -0.31 0.57 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.52 7.57 -51.93 -0.39 0.12 16 32 H 0.40 3.18 8.47 -40.82 -0.35 2.84 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.38 10.05 7.67 -40.82 -0.31 9.74 16 40 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.13 0.69 7.94 -52.49 -0.42 0.28 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.13 0.64 7.16 -52.49 -0.38 0.27 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -33.03 370.40 -8.83 -41.85 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.71 Total: 5.83 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.85 Total: -7.51 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.05 Total: -54.21 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.08 Total: -7.66 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.03 -8.83 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176830565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.754 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds