Wall clock time and date at job start Tue Mar 31 2020 09:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.53002 * 109.47063 * 240.00410 * 2 1 3 5 5 C 1.50709 * 109.47142 * 64.99465 * 4 2 1 6 6 O 1.21280 * 119.99660 * 0.02562 * 5 4 2 7 7 N 1.34773 * 119.99817 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99799 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47125 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.47057 * 180.02562 * 9 8 7 11 11 N 1.46493 * 109.47205 * 180.02562 * 10 9 8 12 12 C 1.36941 * 120.00452 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99275 * 359.97438 * 12 11 10 14 14 C 1.38807 * 120.00181 * 180.02562 * 12 11 10 15 15 N 1.31621 * 120.00206 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47401 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47383 * 119.99560 * 16 14 12 19 19 H 1.48498 * 109.47188 * 239.99492 * 16 14 12 20 20 C 1.50696 * 109.47430 * 120.00564 * 2 1 3 21 21 C 1.38248 * 119.97128 * 239.99664 * 20 2 1 22 22 C 1.38196 * 120.02483 * 179.97438 * 21 20 2 23 23 C 1.38458 * 119.97492 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.02786 * 179.97438 * 23 22 21 25 25 C 1.38465 * 119.94675 * 0.24873 * 23 22 21 26 26 C 1.38197 * 119.97511 * 359.47283 * 25 23 22 27 27 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46818 * 299.99522 * 1 2 3 29 29 H 1.09001 * 109.47810 * 59.99492 * 1 2 3 30 30 H 1.08998 * 109.47740 * 184.99766 * 4 2 1 31 31 H 1.08999 * 109.47080 * 305.00066 * 4 2 1 32 32 H 0.97002 * 120.00162 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.47620 * 300.00991 * 8 7 5 34 34 H 1.09002 * 109.47077 * 60.00608 * 8 7 5 35 35 H 1.08994 * 109.47093 * 300.00079 * 9 8 7 36 36 H 1.08999 * 109.47080 * 60.00697 * 9 8 7 37 37 H 1.09006 * 109.47127 * 299.99979 * 10 9 8 38 38 H 1.08999 * 109.47024 * 60.00151 * 10 9 8 39 39 H 0.97003 * 120.00109 * 359.97438 * 11 10 9 40 40 H 0.97006 * 119.99893 * 180.02562 * 15 14 12 41 41 H 1.08001 * 119.98881 * 0.02562 * 21 20 2 42 42 H 1.07995 * 120.01604 * 180.02562 * 22 21 20 43 43 H 1.08007 * 120.01064 * 179.75151 * 25 23 22 44 44 H 1.07994 * 119.98821 * 180.29814 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6411 0.0572 -2.4767 6 8 1.0115 1.0875 -2.3632 7 7 1.9851 -0.3912 -3.7002 8 6 1.5969 0.3651 -4.8933 9 6 2.1070 -0.3560 -6.1426 10 6 1.7022 0.4343 -7.3886 11 7 2.1900 -0.2564 -8.5848 12 6 1.9452 0.2678 -9.8260 13 1 1.3920 1.1902 -9.9229 14 6 2.4070 -0.3870 -10.9595 15 7 3.0807 -1.5116 -10.8413 16 14 2.0736 0.3285 -12.6525 17 1 1.3025 1.5900 -12.5137 18 1 3.3627 0.6083 -13.3343 19 1 1.2899 -0.6443 -13.4554 20 6 2.0323 -0.7105 1.2303 21 6 2.8272 -0.0381 2.1400 22 6 3.2881 -0.6885 3.2689 23 6 2.9540 -2.0141 3.4885 24 9 3.4044 -2.6510 4.5915 25 6 2.1625 -2.6881 2.5739 26 6 1.6980 -2.0340 1.4486 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5139 -0.8899 30 1 3.1262 -0.7994 -1.2058 31 1 1.6053 -1.7197 -1.2953 32 1 2.4891 -1.2151 -3.7909 33 1 0.5106 0.4426 -4.9370 34 1 2.0308 1.3640 -4.8474 35 1 3.1933 -0.4337 -6.0991 36 1 1.6728 -1.3547 -6.1884 37 1 0.6158 0.5124 -7.4323 38 1 2.1367 1.4329 -7.3426 39 1 2.6866 -1.0852 -8.4978 40 1 3.4038 -1.9689 -11.6334 41 1 3.0874 0.9960 1.9687 42 1 3.9087 -0.1630 3.9796 43 1 1.9045 -3.7233 2.7421 44 1 1.0767 -2.5581 0.7375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176830565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:55 Heat of formation + Delta-G solvation = -88.828021 kcal Electronic energy + Delta-G solvation = -23559.387140 eV Core-core repulsion = 19810.643994 eV Total energy + Delta-G solvation = -3748.743146 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.87087 -41.08565 -40.00874 -37.56251 -36.10290 -35.57318 -33.75087 -32.07217 -31.52928 -30.28817 -28.79368 -26.73394 -24.77237 -24.18565 -23.75965 -22.55570 -21.74392 -20.72470 -19.17919 -18.67643 -18.06331 -17.35627 -17.03283 -16.86535 -16.57417 -16.41794 -16.25808 -15.93107 -15.33697 -15.29487 -15.03669 -14.78681 -14.39810 -14.36041 -14.20716 -14.04869 -13.76431 -13.29817 -13.05029 -13.04030 -12.83332 -12.56727 -12.40789 -12.16718 -12.10776 -12.06989 -12.02963 -11.94469 -11.78455 -11.58206 -10.95869 -10.72616 -10.02873 -10.01968 -9.50175 -9.01978 -7.97190 -5.26234 0.16785 0.31308 1.48142 1.48529 1.58969 1.72273 2.23605 2.56227 2.64948 3.33303 3.36941 3.62834 3.71991 3.79164 3.97725 4.00129 4.09605 4.12936 4.20115 4.31349 4.37852 4.46792 4.47996 4.56902 4.73581 4.75158 4.76099 4.85094 4.90065 5.01133 5.02327 5.13827 5.20109 5.23641 5.30225 5.31531 5.32955 5.42794 5.49047 5.55062 5.66444 5.96123 6.25940 6.63345 7.32317 7.33716 8.07262 8.30895 9.26460 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.036094 B = 0.001699 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.559911 B =16472.589111 C =16896.539661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.029 4.029 3 H 0.077 0.923 4 C -0.128 4.128 5 C 0.508 3.492 6 O -0.579 6.579 7 N -0.721 5.721 8 C 0.134 3.866 9 C -0.118 4.118 10 C 0.151 3.849 11 N -0.747 5.747 12 C -0.249 4.249 13 H 0.075 0.925 14 C -0.075 4.075 15 N -0.968 5.968 16 Si 0.975 3.025 17 H -0.267 1.267 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.085 4.085 21 C -0.091 4.091 22 C -0.156 4.156 23 C 0.069 3.931 24 F -0.153 7.153 25 C -0.154 4.154 26 C -0.085 4.085 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.415 0.585 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.376 0.624 40 H 0.252 0.748 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.116 -1.925 31.023 31.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.048 4.048 3 H 0.095 0.905 4 C -0.167 4.167 5 C 0.296 3.704 6 O -0.459 6.459 7 N -0.374 5.374 8 C 0.009 3.991 9 C -0.156 4.156 10 C 0.024 3.976 11 N -0.390 5.390 12 C -0.381 4.381 13 H 0.093 0.907 14 C -0.267 4.267 15 N -0.619 5.619 16 Si 0.804 3.196 17 H -0.192 1.192 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.085 4.085 21 C -0.109 4.109 22 C -0.175 4.175 23 C 0.050 3.950 24 F -0.132 7.132 25 C -0.173 4.173 26 C -0.102 4.102 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.252 0.748 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.208 0.792 40 H 0.061 0.939 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.626 -1.075 31.030 31.091 hybrid contribution 0.454 -0.440 -0.904 1.103 sum -1.172 -1.515 30.126 30.187 Atomic orbital electron populations 1.21932 0.94015 1.02363 1.02196 1.19774 0.96365 0.98817 0.89861 0.90475 1.21806 1.04459 1.00551 0.89907 1.21229 0.78338 0.85414 0.85379 1.90674 1.41603 1.26462 1.87161 1.46007 1.57702 1.28287 1.05359 1.21037 0.99665 0.95066 0.83342 1.21698 1.01833 0.99702 0.92398 1.20697 0.96441 0.94757 0.85714 1.42550 1.66789 1.28051 1.01591 1.19694 1.28188 1.05166 0.85075 0.90713 1.25582 1.01402 0.98110 1.01650 1.69813 1.43765 1.19273 1.29034 0.85056 0.77065 0.77726 0.79800 1.19161 1.21886 1.21873 1.19967 0.97728 0.94476 0.96358 1.21175 0.96199 1.00836 0.92721 1.21327 1.02889 0.93207 1.00072 1.18052 0.99623 0.92125 0.85195 1.91472 1.87815 1.82226 1.51686 1.21368 0.99284 1.01811 0.94837 1.21108 0.98565 0.93865 0.96700 0.91590 0.92736 0.92493 0.86779 0.86220 0.74823 0.92157 0.92255 0.90848 0.90760 0.96069 0.96111 0.79226 0.93896 0.83716 0.83707 0.83428 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.75 71.98 0.63 -1.62 16 2 C -0.03 -0.39 2.21 -11.54 -0.03 -0.42 16 3 H 0.08 1.24 7.69 -2.39 -0.02 1.22 16 4 C -0.13 -1.48 4.91 29.85 0.15 -1.33 16 5 C 0.51 10.12 7.55 87.66 0.66 10.78 16 6 O -0.58 -16.34 13.97 -3.03 -0.04 -16.39 16 7 N -0.72 -13.58 5.56 -463.05 -2.57 -16.15 16 8 C 0.13 3.29 5.67 86.38 0.49 3.78 16 9 C -0.12 -3.34 5.44 30.60 0.17 -3.17 16 10 C 0.15 5.84 6.26 86.38 0.54 6.38 16 11 N -0.75 -37.60 5.60 -343.46 -1.92 -39.53 16 12 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 13 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 14 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 15 N -0.97 -58.68 13.06 21.65 0.28 -58.40 16 16 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 20 C -0.09 -1.00 4.78 -19.86 -0.09 -1.10 16 21 C -0.09 -1.08 9.67 22.26 0.22 -0.87 16 22 C -0.16 -2.01 10.03 22.31 0.22 -1.79 16 23 C 0.07 1.03 7.30 22.38 0.16 1.20 16 24 F -0.15 -2.70 17.27 44.97 0.78 -1.93 16 25 C -0.15 -1.85 10.03 22.31 0.22 -1.63 16 26 C -0.08 -0.87 8.76 22.26 0.19 -0.68 16 27 H 0.07 0.78 7.39 -2.39 -0.02 0.77 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 1.19 5.95 -2.39 -0.01 1.18 16 30 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.12 0.84 7.57 -2.39 -0.02 0.83 16 32 H 0.42 5.47 8.47 -92.71 -0.79 4.68 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.38 19.76 7.67 -92.71 -0.71 19.05 16 40 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 41 H 0.15 1.30 7.94 -2.91 -0.02 1.28 16 42 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 43 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 44 H 0.15 0.93 7.16 -2.91 -0.02 0.91 16 Total: -1.00 -70.78 370.40 2.91 -67.88 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.48 Total: 24.00 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 4.84 Total: -7.44 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -4.21 Total: -114.07 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.04 Total: -16.39 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -70.78 2.91 -67.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176830565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.953 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds