Wall clock time and date at job start Tue Mar 31 2020 09:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21292 * 119.99847 * 2 1 4 4 C 1.46860 * 119.99940 * 180.02562 * 2 1 3 5 5 C 1.40011 * 120.09820 * 359.96807 * 4 2 1 6 6 C 1.37680 * 119.97839 * 180.02562 * 5 4 2 7 7 C 1.38915 * 120.17167 * 359.74704 * 6 5 4 8 8 O 1.35758 * 119.90218 * 180.27875 * 7 6 5 9 9 C 1.39489 * 120.20041 * 0.51025 * 7 6 5 10 10 O 1.36001 * 119.99109 * 179.76167 * 9 7 6 11 11 C 1.42901 * 116.99784 * 182.86423 * 10 9 7 12 12 H 1.08999 * 109.46964 * 36.73308 * 11 10 9 13 13 C 1.50699 * 109.47035 * 276.72908 * 11 10 9 14 14 H 1.08005 * 119.99710 * 122.93823 * 13 11 10 15 15 C 1.37879 * 120.00136 * 302.93391 * 13 11 10 16 16 N 1.31514 * 119.99827 * 194.83880 * 15 13 11 17 17 Si 1.86795 * 120.00028 * 14.84495 * 15 13 11 18 18 H 1.48497 * 109.47622 * 94.14894 * 17 15 13 19 19 H 1.48501 * 109.47217 * 214.15439 * 17 15 13 20 20 H 1.48505 * 109.47128 * 334.14892 * 17 15 13 21 21 C 1.53004 * 109.46930 * 156.73099 * 11 10 9 22 22 N 1.46897 * 109.47034 * 192.89306 * 21 11 10 23 23 C 1.46904 * 109.47213 * 56.64577 * 22 21 11 24 24 C 1.46902 * 109.47016 * 176.64448 * 22 21 11 25 25 C 1.46898 * 109.47378 * 296.64668 * 22 21 11 26 26 C 1.38032 * 120.01895 * 359.49171 * 9 7 6 27 27 H 1.08997 * 109.47107 * 239.99510 * 1 2 3 28 28 H 1.08997 * 109.47398 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47251 * 119.99592 * 1 2 3 30 30 H 1.08004 * 120.00997 * 0.05294 * 5 4 2 31 31 H 1.07998 * 119.91121 * 180.02562 * 6 5 4 32 32 H 0.96702 * 113.99570 * 270.23360 * 8 7 6 33 33 H 0.97001 * 120.00052 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.47034 * 72.89313 * 21 11 10 35 35 H 1.09002 * 109.47052 * 312.89604 * 21 11 10 36 36 H 1.09001 * 109.47069 * 50.67817 * 23 22 21 37 37 H 1.08995 * 109.47435 * 170.68225 * 23 22 21 38 38 H 1.08996 * 109.46726 * 290.67977 * 23 22 21 39 39 H 1.08996 * 109.47050 * 59.99950 * 24 22 21 40 40 H 1.09005 * 109.47119 * 179.97438 * 24 22 21 41 41 H 1.09000 * 109.47153 * 299.99752 * 24 22 21 42 42 H 1.08998 * 109.47582 * 74.17869 * 25 22 21 43 43 H 1.09001 * 109.47206 * 194.18336 * 25 22 21 44 44 H 1.09003 * 109.46925 * 314.17781 * 25 22 21 45 45 H 1.07993 * 120.08569 * 180.22984 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 1.5433 -2.4856 -0.0004 6 6 2.2342 -3.6765 -0.0004 7 6 3.6233 -3.6778 -0.0059 8 8 4.2990 -4.8552 -0.0116 9 6 4.3261 -2.4729 -0.0006 10 8 5.6861 -2.4791 -0.0011 11 6 6.3407 -1.2107 0.0681 12 1 5.7750 -0.5451 0.7200 13 6 6.4226 -0.6118 -1.3123 14 1 5.9963 0.3617 -1.5048 15 6 7.0419 -1.3066 -2.3296 16 7 7.3751 -0.6873 -3.4409 17 14 7.4075 -3.1274 -2.1294 18 1 6.2988 -3.9224 -2.7158 19 1 8.6762 -3.4573 -2.8272 20 1 7.5383 -3.4502 -0.6857 21 6 7.7523 -1.3953 0.6286 22 7 8.3111 -0.0854 0.9890 23 6 7.4175 0.5820 1.9451 24 6 9.6339 -0.2690 1.6012 25 6 8.4409 0.7407 -0.2187 26 6 3.6417 -1.2742 -0.0006 27 1 -0.3633 -0.5139 0.8899 28 1 -0.3634 1.0276 0.0005 29 1 -0.3634 -0.5138 -0.8901 30 1 0.4633 -2.4876 -0.0008 31 1 1.6947 -4.6121 -0.0008 32 1 4.4950 -5.2004 0.8702 33 1 7.8105 -1.1761 -4.1568 34 1 8.3841 -1.8648 -0.1253 35 1 7.7115 -2.0291 1.5145 36 1 7.1890 -0.0988 2.7651 37 1 7.9064 1.4732 2.3383 38 1 6.4939 0.8667 1.4412 39 1 10.2969 -0.7642 0.8918 40 1 10.0487 0.7030 1.8682 41 1 9.5376 -0.8819 2.4974 42 1 7.4552 1.0866 -0.5300 43 1 9.0765 1.6000 -0.0046 44 1 8.8873 0.1487 -1.0176 45 1 4.1847 -0.3407 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225998754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:32 Heat of formation + Delta-G solvation = 28.917853 kcal Electronic energy + Delta-G solvation = -27367.902750 eV Core-core repulsion = 23663.662830 eV Total energy + Delta-G solvation = -3704.239920 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.50337 -41.31945 -39.93207 -38.72203 -37.10307 -34.68840 -32.60259 -31.83277 -31.23946 -30.52065 -30.16773 -29.27922 -28.04047 -24.93519 -24.55637 -23.82757 -22.28129 -21.19698 -19.89130 -19.10331 -18.62097 -18.47025 -18.00594 -17.82801 -17.07707 -16.79454 -16.50425 -16.10462 -15.76933 -15.46801 -15.36175 -15.00384 -14.94407 -14.76437 -14.51058 -14.29666 -14.23478 -14.13759 -14.04769 -13.60331 -13.47272 -13.39476 -13.22464 -13.11017 -12.85197 -12.62034 -12.41437 -12.08742 -11.96281 -11.41101 -11.15030 -10.84418 -10.58674 -10.19959 -9.70238 -8.88107 -7.89057 -6.09388 -0.27060 0.15846 0.56119 1.52325 1.82093 1.95660 2.13022 2.19302 2.27947 2.32687 2.69502 2.83451 2.86216 3.06408 3.12396 3.16772 3.28217 3.35686 3.43450 3.50401 3.59973 3.62497 3.69934 3.85663 3.92295 3.94700 3.98562 4.17539 4.21941 4.31442 4.38064 4.45400 4.52309 4.60298 4.75446 4.80304 4.90933 5.01835 5.35255 5.36770 5.45311 5.48582 5.76948 6.38619 6.58127 6.68503 6.90292 7.06789 7.66376 9.16379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.396 3.604 3 O -0.457 6.457 4 C -0.149 4.149 5 C -0.099 4.099 6 C -0.125 4.125 7 C 0.096 3.904 8 O -0.484 6.484 9 C 0.114 3.886 10 O -0.308 6.308 11 C 0.155 3.845 12 H 0.064 0.936 13 C -0.594 4.594 14 H 0.097 0.903 15 C 0.096 3.904 16 N -0.838 5.838 17 Si 0.881 3.119 18 H -0.265 1.265 19 H -0.294 1.294 20 H -0.247 1.247 21 C 0.001 3.999 22 N -0.256 5.256 23 C -0.048 4.048 24 C -0.040 4.040 25 C -0.035 4.035 26 C -0.120 4.120 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.386 0.614 33 H 0.283 0.717 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.149 0.851 43 H 0.093 0.907 44 H 0.123 0.877 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.843 2.253 15.677 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.274 3.726 3 O -0.332 6.332 4 C -0.151 4.151 5 C -0.118 4.118 6 C -0.143 4.143 7 C 0.050 3.950 8 O -0.294 6.294 9 C 0.067 3.933 10 O -0.222 6.222 11 C 0.101 3.899 12 H 0.081 0.919 13 C -0.629 4.629 14 H 0.114 0.886 15 C -0.117 4.117 16 N -0.468 5.468 17 Si 0.710 3.290 18 H -0.190 1.190 19 H -0.221 1.221 20 H -0.173 1.173 21 C -0.120 4.120 22 N 0.085 4.915 23 C -0.190 4.190 24 C -0.181 4.181 25 C -0.174 4.174 26 C -0.139 4.139 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.241 0.759 33 H 0.093 0.907 34 H 0.143 0.857 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.166 0.834 43 H 0.111 0.889 44 H 0.142 0.858 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.355 2.723 14.828 15.999 hybrid contribution 0.039 -1.195 0.141 1.203 sum 5.395 1.529 14.970 15.985 Atomic orbital electron populations 1.22256 0.93577 1.05293 1.04637 1.22436 0.91731 0.87506 0.70928 1.90545 1.72220 1.34306 1.36175 1.20367 0.93879 0.94888 1.05921 1.21165 1.00130 0.90772 0.99730 1.21181 0.92291 0.99217 1.01660 1.18157 0.89542 0.83600 1.03717 1.84876 1.76419 1.35030 1.33053 1.19168 0.83809 0.92915 0.97359 1.86281 1.14737 1.34177 1.86988 1.20723 0.86683 0.82915 0.99628 0.91883 1.21119 1.42688 1.06864 0.92194 0.88555 1.25030 0.93094 0.98784 0.94826 1.69879 1.33626 1.37416 1.05905 0.86961 0.78560 0.84327 0.79179 1.19035 1.22150 1.17346 1.24209 1.01753 0.81266 1.04794 1.45727 1.13970 1.15861 1.15897 1.24137 0.98230 1.01651 0.94954 1.24056 0.83261 1.07936 1.02894 1.24555 1.10802 0.96519 0.85561 1.21464 0.93597 0.98069 1.00785 0.88777 0.89626 0.88658 0.84653 0.84321 0.75860 0.90680 0.85677 0.87282 0.87021 0.86565 0.85730 0.86465 0.86431 0.86910 0.83352 0.88865 0.85815 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 0.16 8.92 36.01 0.32 0.48 16 2 C 0.40 1.14 7.22 -30.82 -0.22 0.92 16 3 O -0.46 -2.82 17.07 5.55 0.09 -2.72 16 4 C -0.15 -0.44 5.87 -105.07 -0.62 -1.05 16 5 C -0.10 -0.11 9.46 -39.12 -0.37 -0.48 16 6 C -0.13 -0.22 9.96 -39.53 -0.39 -0.62 16 7 C 0.10 0.35 6.73 -38.86 -0.26 0.09 16 8 O -0.48 -1.65 13.26 -33.65 -0.45 -2.10 16 9 C 0.11 0.48 6.59 -39.19 -0.26 0.22 16 10 O -0.31 -1.09 5.89 -34.41 -0.20 -1.29 16 11 C 0.16 0.01 1.57 -27.88 -0.04 -0.03 16 12 H 0.06 -0.13 3.93 -51.93 -0.20 -0.34 16 13 C -0.59 -2.93 5.25 -34.44 -0.18 -3.12 16 14 H 0.10 0.72 7.41 -52.48 -0.39 0.33 16 15 C 0.10 0.80 4.66 -17.82 -0.08 0.71 16 16 N -0.84 -9.46 13.96 55.43 0.77 -8.68 16 17 Si 0.88 7.02 24.49 -169.99 -4.16 2.86 16 18 H -0.27 -3.16 7.11 56.52 0.40 -2.76 16 19 H -0.29 -2.65 7.11 56.52 0.40 -2.25 16 20 H -0.25 -1.15 4.94 56.52 0.28 -0.87 16 21 C 0.00 -0.01 3.08 -3.82 -0.01 -0.02 16 22 N -0.26 2.48 0.05 -395.62 -0.02 2.46 16 23 C -0.05 0.54 7.48 60.07 0.45 0.99 16 24 C -0.04 0.51 7.95 60.07 0.48 0.99 16 25 C -0.03 0.24 6.90 60.06 0.41 0.65 16 26 C -0.12 -0.47 8.24 -38.98 -0.32 -0.79 16 27 H 0.09 -0.27 8.08 -51.93 -0.42 -0.69 16 28 H 0.08 -0.04 8.12 -51.93 -0.42 -0.46 16 29 H 0.09 -0.18 8.08 -51.92 -0.42 -0.60 16 30 H 0.14 -0.25 7.03 -52.48 -0.37 -0.62 16 31 H 0.14 -0.03 8.06 -52.49 -0.42 -0.45 16 32 H 0.39 -0.74 9.06 45.56 0.41 -0.32 16 33 H 0.28 3.20 8.31 -40.82 -0.34 2.87 16 34 H 0.13 -0.38 4.74 -51.93 -0.25 -0.63 16 35 H 0.11 -0.81 8.10 -51.93 -0.42 -1.24 16 36 H 0.11 -1.40 8.05 -51.93 -0.42 -1.82 16 37 H 0.12 -1.58 8.01 -51.93 -0.42 -2.00 16 38 H 0.12 -1.16 6.06 -51.93 -0.31 -1.47 16 39 H 0.12 -1.45 8.14 -51.93 -0.42 -1.87 16 40 H 0.12 -1.71 7.97 -51.93 -0.41 -2.13 16 41 H 0.11 -1.60 8.13 -51.93 -0.42 -2.02 16 42 H 0.15 -0.58 5.17 -51.93 -0.27 -0.85 16 43 H 0.09 -0.92 7.91 -51.93 -0.41 -1.33 16 44 H 0.12 -0.47 7.04 -51.93 -0.37 -0.83 16 45 H 0.15 0.57 5.24 -52.49 -0.28 0.30 16 LS Contribution 346.36 15.07 5.22 5.22 Total: 0.00 -21.64 346.36 -5.73 -27.37 By element: Atomic # 1 Polarization: -16.19 SS G_CDS: -5.88 Total: -22.07 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.10 Total: -1.04 kcal Atomic # 7 Polarization: -6.98 SS G_CDS: 0.75 Total: -6.22 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.55 Total: -6.11 kcal Atomic # 14 Polarization: 7.02 SS G_CDS: -4.16 Total: 2.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -21.64 -5.73 -27.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225998754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.286 kcal (2) G-P(sol) polarization free energy of solvation -21.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds