Wall clock time and date at job start Tue Mar 31 2020 09:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21292 * 119.99847 * 2 1 4 4 C 1.46860 * 119.99940 * 180.02562 * 2 1 3 5 5 C 1.40011 * 120.09820 * 359.96807 * 4 2 1 6 6 C 1.37680 * 119.97839 * 180.02562 * 5 4 2 7 7 C 1.38915 * 120.17167 * 359.74704 * 6 5 4 8 8 O 1.35758 * 119.90218 * 180.27875 * 7 6 5 9 9 C 1.39489 * 120.20041 * 0.51025 * 7 6 5 10 10 O 1.36001 * 119.99109 * 179.76167 * 9 7 6 11 11 C 1.42901 * 116.99784 * 182.86423 * 10 9 7 12 12 H 1.08999 * 109.46964 * 36.73308 * 11 10 9 13 13 C 1.50699 * 109.47035 * 276.72908 * 11 10 9 14 14 H 1.08005 * 119.99710 * 122.93823 * 13 11 10 15 15 C 1.37879 * 120.00136 * 302.93391 * 13 11 10 16 16 N 1.31514 * 119.99827 * 194.83880 * 15 13 11 17 17 Si 1.86795 * 120.00028 * 14.84495 * 15 13 11 18 18 H 1.48497 * 109.47622 * 94.14894 * 17 15 13 19 19 H 1.48501 * 109.47217 * 214.15439 * 17 15 13 20 20 H 1.48505 * 109.47128 * 334.14892 * 17 15 13 21 21 C 1.53004 * 109.46930 * 156.73099 * 11 10 9 22 22 N 1.46897 * 109.47034 * 192.89306 * 21 11 10 23 23 C 1.46904 * 109.47213 * 56.64577 * 22 21 11 24 24 C 1.46902 * 109.47016 * 176.64448 * 22 21 11 25 25 C 1.46898 * 109.47378 * 296.64668 * 22 21 11 26 26 C 1.38032 * 120.01895 * 359.49171 * 9 7 6 27 27 H 1.08997 * 109.47107 * 239.99510 * 1 2 3 28 28 H 1.08997 * 109.47398 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47251 * 119.99592 * 1 2 3 30 30 H 1.08004 * 120.00997 * 0.05294 * 5 4 2 31 31 H 1.07998 * 119.91121 * 180.02562 * 6 5 4 32 32 H 0.96702 * 113.99570 * 270.23360 * 8 7 6 33 33 H 0.97001 * 120.00052 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.47034 * 72.89313 * 21 11 10 35 35 H 1.09002 * 109.47052 * 312.89604 * 21 11 10 36 36 H 1.09001 * 109.47069 * 50.67817 * 23 22 21 37 37 H 1.08995 * 109.47435 * 170.68225 * 23 22 21 38 38 H 1.08996 * 109.46726 * 290.67977 * 23 22 21 39 39 H 1.08996 * 109.47050 * 59.99950 * 24 22 21 40 40 H 1.09005 * 109.47119 * 179.97438 * 24 22 21 41 41 H 1.09000 * 109.47153 * 299.99752 * 24 22 21 42 42 H 1.08998 * 109.47582 * 74.17869 * 25 22 21 43 43 H 1.09001 * 109.47206 * 194.18336 * 25 22 21 44 44 H 1.09003 * 109.46925 * 314.17781 * 25 22 21 45 45 H 1.07993 * 120.08569 * 180.22984 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 1.5433 -2.4856 -0.0004 6 6 2.2342 -3.6765 -0.0004 7 6 3.6233 -3.6778 -0.0059 8 8 4.2990 -4.8552 -0.0116 9 6 4.3261 -2.4729 -0.0006 10 8 5.6861 -2.4791 -0.0011 11 6 6.3407 -1.2107 0.0681 12 1 5.7750 -0.5451 0.7200 13 6 6.4226 -0.6118 -1.3123 14 1 5.9963 0.3617 -1.5048 15 6 7.0419 -1.3066 -2.3296 16 7 7.3751 -0.6873 -3.4409 17 14 7.4075 -3.1274 -2.1294 18 1 6.2988 -3.9224 -2.7158 19 1 8.6762 -3.4573 -2.8272 20 1 7.5383 -3.4502 -0.6857 21 6 7.7523 -1.3953 0.6286 22 7 8.3111 -0.0854 0.9890 23 6 7.4175 0.5820 1.9451 24 6 9.6339 -0.2690 1.6012 25 6 8.4409 0.7407 -0.2187 26 6 3.6417 -1.2742 -0.0006 27 1 -0.3633 -0.5139 0.8899 28 1 -0.3634 1.0276 0.0005 29 1 -0.3634 -0.5138 -0.8901 30 1 0.4633 -2.4876 -0.0008 31 1 1.6947 -4.6121 -0.0008 32 1 4.4950 -5.2004 0.8702 33 1 7.8105 -1.1761 -4.1568 34 1 8.3841 -1.8648 -0.1253 35 1 7.7115 -2.0291 1.5145 36 1 7.1890 -0.0988 2.7651 37 1 7.9064 1.4732 2.3383 38 1 6.4939 0.8667 1.4412 39 1 10.2969 -0.7642 0.8918 40 1 10.0487 0.7030 1.8682 41 1 9.5376 -0.8819 2.4974 42 1 7.4552 1.0866 -0.5300 43 1 9.0765 1.6000 -0.0046 44 1 8.8873 0.1487 -1.0176 45 1 4.1847 -0.3407 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225998754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:31 Heat of formation + Delta-G solvation = 16.900626 kcal Electronic energy + Delta-G solvation = -27368.423856 eV Core-core repulsion = 23663.662830 eV Total energy + Delta-G solvation = -3704.761026 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.92314 -41.46949 -40.16771 -38.88934 -37.30711 -35.15242 -32.70320 -31.91418 -31.38588 -29.65386 -29.63801 -29.31693 -27.88963 -25.07384 -24.57965 -23.63602 -22.33703 -21.34759 -20.01547 -19.23587 -18.29822 -18.03015 -17.85679 -17.73678 -17.13503 -16.90078 -16.61456 -16.39345 -15.96271 -15.60955 -15.44805 -15.15530 -14.88452 -14.64160 -14.48256 -14.00333 -13.68750 -13.56087 -13.33769 -13.26523 -13.25615 -13.16281 -13.08880 -13.02601 -12.96544 -12.82514 -12.72548 -12.54233 -12.22910 -11.60024 -11.49920 -11.20722 -10.88894 -10.81617 -9.90538 -9.10233 -8.58068 -6.68454 -0.47610 0.37864 0.81861 1.18454 1.30980 1.42674 1.50191 2.13389 2.20761 2.66964 2.77111 2.95837 3.00012 3.03462 3.21327 3.28501 3.71822 3.82116 3.87797 4.08119 4.10207 4.20683 4.21375 4.24279 4.26544 4.35066 4.43605 4.53125 4.56591 4.61945 4.66098 4.66986 4.67475 4.77020 4.78491 4.78645 5.02694 5.06916 5.20905 5.21758 5.23946 5.33739 5.63652 5.85494 6.27459 6.48514 6.51439 6.85096 7.06205 8.50877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.394 3.606 3 O -0.503 6.503 4 C -0.167 4.167 5 C -0.084 4.084 6 C -0.127 4.127 7 C 0.085 3.915 8 O -0.502 6.502 9 C 0.091 3.909 10 O -0.317 6.317 11 C 0.147 3.853 12 H 0.087 0.913 13 C -0.551 4.551 14 H 0.063 0.937 15 C 0.066 3.934 16 N -0.897 5.897 17 Si 0.909 3.091 18 H -0.322 1.322 19 H -0.314 1.314 20 H -0.191 1.191 21 C 0.009 3.991 22 N -0.243 5.243 23 C -0.054 4.054 24 C -0.045 4.045 25 C -0.029 4.029 26 C -0.135 4.135 27 H 0.124 0.876 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.407 0.593 33 H 0.269 0.731 34 H 0.105 0.895 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.111 0.889 43 H 0.132 0.868 44 H 0.090 0.910 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.330 1.659 19.572 20.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.275 3.725 3 O -0.382 6.382 4 C -0.168 4.168 5 C -0.103 4.103 6 C -0.145 4.145 7 C 0.039 3.961 8 O -0.315 6.315 9 C 0.045 3.955 10 O -0.232 6.232 11 C 0.093 3.907 12 H 0.104 0.896 13 C -0.587 4.587 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.740 3.260 18 H -0.251 1.251 19 H -0.243 1.243 20 H -0.114 1.114 21 C -0.114 4.114 22 N 0.098 4.902 23 C -0.194 4.194 24 C -0.185 4.185 25 C -0.171 4.171 26 C -0.154 4.154 27 H 0.142 0.858 28 H 0.100 0.900 29 H 0.131 0.869 30 H 0.190 0.810 31 H 0.180 0.820 32 H 0.266 0.734 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.167 0.833 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.130 0.870 43 H 0.150 0.850 44 H 0.109 0.891 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.850 2.108 18.810 19.539 hybrid contribution 0.064 -0.989 -0.990 1.401 sum 4.914 1.119 17.820 18.519 Atomic orbital electron populations 1.22302 0.90312 1.05868 1.06746 1.23049 0.93512 0.86731 0.69158 1.90532 1.73393 1.35630 1.38622 1.20592 0.93644 0.95948 1.06579 1.21545 1.01829 0.89526 0.97357 1.21507 0.91639 1.00522 1.00862 1.18460 0.90484 0.83464 1.03652 1.84814 1.76600 1.34881 1.35216 1.19379 0.84126 0.93339 0.98617 1.86207 1.14798 1.34917 1.87271 1.20927 0.90046 0.82504 0.97248 0.89555 1.21244 1.38389 1.04927 0.94176 0.91856 1.25362 0.93957 0.99732 0.94948 1.70003 1.38043 1.37837 1.07323 0.86617 0.75098 0.82513 0.81747 1.25130 1.24345 1.11407 1.23887 0.97158 0.84410 1.05899 1.45582 1.15905 1.13310 1.15361 1.24341 0.97171 1.03488 0.94443 1.24348 0.80859 1.10066 1.03214 1.24247 1.08982 0.97528 0.86332 1.21479 0.94512 0.97643 1.01767 0.85820 0.89995 0.86925 0.81025 0.81963 0.73361 0.92175 0.87643 0.83089 0.84662 0.83349 0.88445 0.87094 0.83837 0.84385 0.87030 0.85018 0.89145 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 0.60 8.92 71.24 0.64 1.23 16 2 C 0.39 2.44 7.22 27.94 0.20 2.64 16 3 O -0.50 -7.20 17.07 -3.07 -0.05 -7.25 16 4 C -0.17 -1.01 5.87 -20.15 -0.12 -1.13 16 5 C -0.08 -0.05 9.46 22.57 0.21 0.16 16 6 C -0.13 -0.29 9.96 22.30 0.22 -0.06 16 7 C 0.09 0.62 6.73 22.73 0.15 0.78 16 8 O -0.50 -3.28 13.26 -76.81 -1.02 -4.30 16 9 C 0.09 0.84 6.59 22.52 0.15 0.99 16 10 O -0.32 -2.40 5.89 -79.53 -0.47 -2.87 16 11 C 0.15 0.16 1.57 29.85 0.05 0.21 16 12 H 0.09 -0.29 3.93 -2.39 -0.01 -0.30 16 13 C -0.55 -7.30 5.25 25.60 0.13 -7.17 16 14 H 0.06 1.26 7.41 -2.91 -0.02 1.24 16 15 C 0.07 1.37 4.66 84.66 0.39 1.76 16 16 N -0.90 -25.02 13.96 21.45 0.30 -24.73 16 17 Si 0.91 17.02 24.49 68.60 1.68 18.70 16 18 H -0.32 -9.15 7.11 99.48 0.71 -8.44 16 19 H -0.31 -6.74 7.11 99.48 0.71 -6.04 16 20 H -0.19 -1.68 4.94 99.48 0.49 -1.19 16 21 C 0.01 -0.10 3.08 86.31 0.27 0.17 16 22 N -0.24 5.01 0.05 ******* -0.07 4.95 16 23 C -0.05 1.32 7.48 127.69 0.96 2.28 16 24 C -0.05 1.29 7.95 127.69 1.02 2.30 16 25 C -0.03 0.37 6.90 127.69 0.88 1.25 16 26 C -0.14 -1.25 8.24 22.66 0.19 -1.06 16 27 H 0.12 -1.09 8.08 -2.39 -0.02 -1.11 16 28 H 0.08 -0.14 8.12 -2.39 -0.02 -0.16 16 29 H 0.11 -0.69 8.08 -2.38 -0.02 -0.71 16 30 H 0.17 -1.24 7.03 -2.91 -0.02 -1.26 16 31 H 0.16 -0.46 8.06 -2.91 -0.02 -0.48 16 32 H 0.41 -1.94 9.06 -74.06 -0.67 -2.61 16 33 H 0.27 7.67 8.31 -92.71 -0.77 6.90 16 34 H 0.11 -0.66 4.74 -2.39 -0.01 -0.68 16 35 H 0.15 -2.81 8.10 -2.39 -0.02 -2.82 16 36 H 0.14 -3.86 8.05 -2.39 -0.02 -3.88 16 37 H 0.15 -4.52 8.01 -2.39 -0.02 -4.54 16 38 H 0.10 -1.78 6.06 -2.39 -0.01 -1.80 16 39 H 0.11 -2.92 8.14 -2.39 -0.02 -2.94 16 40 H 0.14 -4.73 7.97 -2.38 -0.02 -4.75 16 41 H 0.14 -4.52 8.13 -2.39 -0.02 -4.54 16 42 H 0.11 -0.54 5.17 -2.39 -0.01 -0.55 16 43 H 0.13 -2.68 7.91 -2.39 -0.02 -2.70 16 44 H 0.09 -0.43 7.04 -2.39 -0.02 -0.44 16 45 H 0.14 1.44 5.24 -2.91 -0.02 1.42 16 Total: 0.00 -59.34 346.36 5.83 -53.50 By element: Atomic # 1 Polarization: -42.49 SS G_CDS: 0.13 Total: -42.36 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.33 Total: 4.36 kcal Atomic # 7 Polarization: -20.01 SS G_CDS: 0.23 Total: -19.78 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -1.54 Total: -14.42 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: 1.68 Total: 18.70 kcal Total: -59.34 5.83 -53.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225998754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.404 kcal (2) G-P(sol) polarization free energy of solvation -59.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds