Wall clock time and date at job start Tue Mar 31 2020 09:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35727 * 116.99945 * 2 1 4 4 N 1.32244 * 119.65543 * 0.02562 * 3 2 1 5 5 C 1.31952 * 121.66940 * 179.97438 * 4 3 2 6 6 C 1.38296 * 120.80254 * 0.02562 * 5 4 3 7 7 F 1.35094 * 120.38247 * 179.97438 * 6 5 4 8 8 C 1.38959 * 119.23216 * 359.69105 * 6 5 4 9 9 C 1.38427 * 118.46421 * 0.57221 * 8 6 5 10 10 C 1.50700 * 120.42905 * 179.72285 * 9 8 6 11 11 N 1.46898 * 109.46746 * 268.83178 * 10 9 8 12 12 C 1.46898 * 111.00151 * 170.26805 * 11 10 9 13 13 C 1.50702 * 109.47255 * 196.93838 * 12 11 10 14 14 H 1.07994 * 119.99812 * 5.53028 * 13 12 11 15 15 C 1.37879 * 119.99867 * 185.52868 * 13 12 11 16 16 N 1.31512 * 120.00176 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99836 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46999 * 60.00204 * 17 15 13 19 19 H 1.48497 * 109.46978 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46955 * 299.99945 * 17 15 13 21 21 C 1.46903 * 110.99989 * 294.22119 * 11 10 9 22 22 C 1.55246 * 110.57686 * 263.91885 * 21 11 10 23 23 C 1.54891 * 102.58290 * 203.33808 * 22 21 11 24 24 C 1.54255 * 104.31626 * 37.93375 * 23 22 21 25 25 C 1.53876 * 106.60071 * 336.32177 * 24 23 22 26 26 H 1.08999 * 109.47577 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47716 * 300.00401 * 1 2 3 28 28 H 1.09003 * 109.47258 * 60.00317 * 1 2 3 29 29 H 1.08007 * 119.59932 * 179.97438 * 5 4 3 30 30 H 1.07997 * 120.76459 * 180.31512 * 8 6 5 31 31 H 1.08999 * 109.47308 * 148.83313 * 10 9 8 32 32 H 1.09000 * 109.47179 * 28.82306 * 10 9 8 33 33 H 1.09004 * 109.47006 * 316.93943 * 12 11 10 34 34 H 1.08997 * 109.47259 * 76.93654 * 12 11 10 35 35 H 0.97001 * 120.00397 * 179.97438 * 16 15 13 36 36 H 1.08997 * 110.43113 * 26.50059 * 21 11 10 37 37 H 1.08996 * 110.89438 * 85.05161 * 22 21 11 38 38 H 1.08993 * 110.77000 * 321.56691 * 22 21 11 39 39 H 1.09000 * 110.48503 * 279.18455 * 23 22 21 40 40 H 1.09002 * 110.48751 * 156.68314 * 23 22 21 41 41 H 1.08994 * 110.03696 * 95.60741 * 24 23 22 42 42 H 1.09004 * 110.03644 * 216.99302 * 24 23 22 43 43 H 1.08994 * 110.03400 * 119.28194 * 25 24 23 44 44 H 1.09001 * 110.03541 * 240.67112 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 7 1.3182 2.3141 0.0005 5 6 1.8756 3.5101 0.0010 6 6 3.2514 3.6503 0.0005 7 9 3.8130 4.8789 0.0006 8 6 4.0494 2.5127 0.0060 9 6 3.4321 1.2737 -0.0004 10 6 4.2548 0.0111 -0.0011 11 7 4.5039 -0.4102 -1.3862 12 6 5.4890 -1.4987 -1.4363 13 6 6.0283 -1.6240 -2.8380 14 1 5.7428 -0.9061 -3.5925 15 6 6.8862 -2.6552 -3.1569 16 7 7.2335 -3.5297 -2.2381 17 14 7.5553 -2.8101 -4.8941 18 1 8.3213 -1.5860 -5.2405 19 1 8.4495 -3.9928 -4.9765 20 1 6.4275 -2.9743 -5.8461 21 6 3.2533 -0.8008 -2.0506 22 6 3.0545 -2.3388 -1.9785 23 6 2.1104 -2.6135 -3.1753 24 6 2.6006 -1.6510 -4.2766 25 6 3.3273 -0.4985 -3.5615 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3635 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.2497 4.3903 0.0010 30 1 5.1264 2.5934 0.0109 31 1 3.7143 -0.7751 0.5261 32 1 5.2055 0.1966 0.4987 33 1 6.3073 -1.2801 -0.7503 34 1 5.0115 -2.4345 -1.1458 35 1 7.8367 -4.2554 -2.4625 36 1 2.4056 -0.2853 -1.5994 37 1 2.5814 -2.6260 -1.0395 38 1 4.0041 -2.8578 -2.1085 39 1 1.0780 -2.3908 -2.9057 40 1 2.2028 -3.6486 -3.5043 41 1 3.2885 -2.1682 -4.9454 42 1 1.7513 -1.2651 -4.8404 43 1 4.3678 -0.4564 -3.8833 44 1 2.8311 0.4475 -3.7784 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231742474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:52 Heat of formation + Delta-G solvation = -43.335473 kcal Electronic energy + Delta-G solvation = -26968.351033 eV Core-core repulsion = 23221.580592 eV Total energy + Delta-G solvation = -3746.770441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.88612 -41.94138 -39.86858 -38.81843 -36.30128 -34.88213 -33.47293 -31.58200 -29.51884 -29.22877 -28.69309 -28.05160 -26.15837 -24.18416 -23.87566 -22.88587 -21.13078 -20.11417 -19.42359 -18.73793 -18.64709 -17.94568 -17.56707 -16.76708 -16.65320 -16.44032 -16.12662 -15.86325 -15.58081 -15.32601 -14.74948 -14.62882 -14.44932 -14.16652 -14.04197 -13.92003 -13.65009 -13.20396 -13.01602 -12.76585 -12.70319 -12.62890 -12.38523 -12.17697 -11.93176 -11.87473 -11.74507 -11.65907 -11.31789 -11.00611 -10.82751 -10.76144 -10.55611 -10.42012 -9.36760 -8.80433 -8.08721 -6.14137 -0.09712 0.02623 1.43169 1.43985 1.51025 2.05062 2.43225 2.51215 3.03751 3.17624 3.24258 3.42827 3.69285 3.76664 3.95748 4.01153 4.09949 4.24024 4.30670 4.42132 4.45975 4.48340 4.67116 4.74537 4.77382 4.80262 4.83322 4.85591 4.92103 4.99779 5.05413 5.10167 5.22199 5.23550 5.32883 5.36037 5.39414 5.55403 5.59404 5.77040 5.96675 6.15550 6.25220 6.49452 6.61873 6.74992 7.02618 7.53145 9.00939 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015293 B = 0.004976 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.451789 B = 5625.404793 C = 6505.350563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C 0.309 3.691 4 N -0.518 5.518 5 C 0.115 3.885 6 C 0.008 3.992 7 F -0.132 7.132 8 C -0.060 4.060 9 C -0.119 4.119 10 C 0.103 3.897 11 N -0.531 5.531 12 C 0.197 3.803 13 C -0.498 4.498 14 H 0.071 0.929 15 C 0.008 3.992 16 N -0.934 5.934 17 Si 0.947 3.053 18 H -0.273 1.273 19 H -0.289 1.289 20 H -0.270 1.270 21 C 0.088 3.912 22 C -0.157 4.157 23 C -0.109 4.109 24 C -0.114 4.114 25 C -0.123 4.123 26 H 0.115 0.885 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.202 0.798 30 H 0.160 0.840 31 H 0.038 0.962 32 H 0.079 0.921 33 H -0.007 1.007 34 H 0.000 1.000 35 H 0.259 0.741 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.495 10.517 4.154 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.216 6.216 3 C 0.130 3.870 4 N -0.241 5.241 5 C -0.042 4.042 6 C -0.014 4.014 7 F -0.111 7.111 8 C -0.087 4.087 9 C -0.122 4.122 10 C -0.025 4.025 11 N -0.254 5.254 12 C 0.071 3.929 13 C -0.536 4.536 14 H 0.089 0.911 15 C -0.190 4.190 16 N -0.576 5.576 17 Si 0.773 3.227 18 H -0.198 1.198 19 H -0.214 1.214 20 H -0.195 1.195 21 C -0.020 4.020 22 C -0.196 4.196 23 C -0.147 4.147 24 C -0.152 4.152 25 C -0.160 4.160 26 H 0.133 0.867 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.219 0.781 30 H 0.177 0.823 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.011 0.989 34 H 0.018 0.982 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.978 10.444 3.928 18.677 hybrid contribution 1.392 -0.787 -0.277 1.623 sum -13.586 9.657 3.652 17.064 Atomic orbital electron populations 1.23105 0.75765 1.04568 1.02683 1.86363 1.24444 1.23816 1.86943 1.19706 0.88934 0.85278 0.93062 1.67439 1.39555 0.98139 1.18962 1.22930 0.90972 0.95448 0.94844 1.18530 0.92957 0.80452 1.09457 1.91504 1.85523 1.39657 1.94410 1.21535 1.02185 0.89736 0.95226 1.19748 0.91110 0.96163 1.05199 1.20792 0.98058 0.92321 0.91357 1.62276 1.10426 1.39451 1.13214 1.19693 0.89020 0.87938 0.96227 1.21550 1.25504 1.10207 0.96338 0.91113 1.25665 0.97141 0.95791 1.00364 1.70061 1.36463 1.16119 1.34943 0.85770 0.78444 0.77325 0.81134 1.19803 1.21443 1.19484 1.22713 0.91219 0.93528 0.94524 1.23202 1.00219 0.98557 0.97601 1.22158 0.98748 0.98685 0.95076 1.22001 0.99231 0.96325 0.97668 1.22387 1.01588 0.96882 0.95181 0.86665 0.91676 0.92053 0.78091 0.82285 0.94369 0.90227 0.98869 0.98250 0.93196 0.88848 0.93152 0.91104 0.90504 0.92640 0.93763 0.90699 0.91164 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.38 113.37 1.18 1.82 16 2 O -0.31 -8.53 7.28 -90.50 -0.66 -9.19 16 3 C 0.31 8.79 6.46 84.78 0.55 9.34 16 4 N -0.52 -12.91 9.21 -308.76 -2.84 -15.75 16 5 C 0.12 2.44 11.16 84.69 0.95 3.38 16 6 C 0.01 0.19 7.34 22.46 0.16 0.35 16 7 F -0.13 -3.07 17.28 44.97 0.78 -2.30 16 8 C -0.06 -1.63 9.83 22.49 0.22 -1.41 16 9 C -0.12 -3.60 5.05 -19.67 -0.10 -3.70 16 10 C 0.10 3.67 4.96 85.56 0.42 4.09 16 11 N -0.53 -22.17 4.39 -873.05 -3.83 -26.00 16 12 C 0.20 9.97 4.26 85.56 0.36 10.33 16 13 C -0.50 -26.84 7.57 25.60 0.19 -26.65 16 14 H 0.07 3.79 4.96 -2.91 -0.01 3.78 16 15 C 0.01 0.43 5.46 84.66 0.46 0.89 16 16 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 17 Si 0.95 44.00 29.54 68.60 2.03 46.03 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 C 0.09 3.36 2.64 46.11 0.12 3.48 16 22 C -0.16 -6.16 5.51 32.01 0.18 -5.99 16 23 C -0.11 -3.55 6.82 31.67 0.22 -3.34 16 24 C -0.11 -3.85 6.80 31.32 0.21 -3.64 16 25 C -0.12 -4.64 6.13 31.32 0.19 -4.45 16 26 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 1.15 8.10 -2.38 -0.02 1.13 16 28 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 29 H 0.20 2.72 8.06 -2.91 -0.02 2.69 16 30 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 31 H 0.04 1.39 7.56 -2.39 -0.02 1.37 16 32 H 0.08 2.78 7.80 -2.39 -0.02 2.76 16 33 H -0.01 -0.37 7.79 -2.39 -0.02 -0.39 16 34 H 0.00 0.00 5.25 -2.39 -0.01 -0.01 16 35 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.09 3.28 3.44 -2.39 -0.01 3.27 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 3.45 4.69 -2.39 -0.01 3.43 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.07 3.11 4.55 -2.39 -0.01 3.10 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -62.23 346.36 2.09 -60.14 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 1.02 Total: 17.24 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 5.32 Total: -15.47 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -6.39 Total: -96.45 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.66 Total: -9.19 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -62.23 2.09 -60.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231742474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.806 kcal (2) G-P(sol) polarization free energy of solvation -62.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds