Wall clock time and date at job start Tue Mar 31 2020 09:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21296 * 119.99775 * 2 1 4 4 N 1.34773 * 120.00245 * 179.97438 * 2 1 3 5 5 C 1.40147 * 120.00285 * 184.37127 * 4 2 1 6 6 C 1.39378 * 120.42177 * 323.12027 * 5 4 2 7 7 C 1.38325 * 118.42255 * 179.75099 * 6 5 4 8 8 C 1.38911 * 119.18345 * 0.51200 * 7 6 5 9 9 O 1.35748 * 119.60819 * 179.75272 * 8 7 6 10 10 C 1.42896 * 117.00165 * 179.72685 * 9 8 7 11 11 H 1.09003 * 109.47069 * 30.00192 * 10 9 8 12 12 C 1.50699 * 109.47460 * 270.00249 * 10 9 8 13 13 H 1.07998 * 120.00339 * 122.87070 * 12 10 9 14 14 C 1.37880 * 119.99851 * 302.87357 * 12 10 9 15 15 N 1.31519 * 119.99920 * 3.31854 * 14 12 10 16 16 Si 1.86801 * 120.00001 * 183.32457 * 14 12 10 17 17 H 1.48496 * 109.47345 * 59.99632 * 16 14 12 18 18 H 1.48504 * 109.47013 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46891 * 299.99204 * 16 14 12 20 20 C 1.52999 * 109.47413 * 150.00153 * 10 9 8 21 21 N 1.46908 * 109.46856 * 292.59684 * 20 10 9 22 22 C 1.46894 * 109.47196 * 64.97064 * 21 20 10 23 23 C 1.46900 * 109.46915 * 184.97574 * 21 20 10 24 24 C 1.46898 * 109.47023 * 304.97195 * 21 20 10 25 25 N 1.32207 * 120.78327 * 359.47604 * 8 7 6 26 26 C 1.31957 * 121.71824 * 0.27577 * 25 8 7 27 27 H 1.09000 * 109.47312 * 240.00521 * 1 2 3 28 28 H 1.09001 * 109.47178 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46890 * 119.99997 * 1 2 3 30 30 H 0.96998 * 119.99703 * 4.38004 * 4 2 1 31 31 H 1.07992 * 120.78816 * 0.02562 * 6 5 4 32 32 H 1.07992 * 120.40774 * 180.28704 * 7 6 5 33 33 H 0.97003 * 119.99729 * 5.75227 * 15 14 12 34 34 H 1.08996 * 109.47185 * 52.58904 * 20 10 9 35 35 H 1.08998 * 109.47269 * 172.59956 * 20 10 9 36 36 H 1.09008 * 109.47128 * 49.43480 * 22 21 20 37 37 H 1.09001 * 109.47365 * 169.43000 * 22 21 20 38 38 H 1.08995 * 109.47377 * 289.43738 * 22 21 20 39 39 H 1.08997 * 109.47552 * 59.99915 * 23 21 20 40 40 H 1.08998 * 109.47046 * 179.97438 * 23 21 20 41 41 H 1.08999 * 109.47096 * 299.99754 * 23 21 20 42 42 H 1.09004 * 109.47062 * 60.00082 * 24 21 20 43 43 H 1.09002 * 109.47520 * 180.02562 * 24 21 20 44 44 H 1.09002 * 109.47713 * 300.00416 * 24 21 20 45 45 H 1.07998 * 119.63091 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5793 -1.1689 0.0930 6 6 4.3299 -0.1819 -0.5434 7 6 5.7072 -0.2202 -0.4204 8 6 6.2930 -1.2399 0.3190 9 8 7.6441 -1.2887 0.4411 10 6 8.1870 -2.3575 1.2188 11 1 7.5307 -3.2253 1.1520 12 6 8.3017 -1.9241 2.6576 13 1 7.8083 -2.4908 3.4333 14 6 9.0366 -0.8039 2.9836 15 7 9.5831 -0.0766 2.0338 16 14 9.2561 -0.3194 4.7743 17 1 9.9353 -1.4193 5.5050 18 1 10.0814 0.9124 4.8561 19 1 7.9264 -0.0663 5.3851 20 6 9.5731 -2.7241 0.6846 21 7 9.4415 -3.3130 -0.6548 22 6 8.9207 -2.3024 -1.5850 23 6 10.7571 -3.7736 -1.1185 24 6 8.5153 -4.4518 -0.6002 25 7 5.5501 -2.1603 0.9096 26 6 4.2337 -2.1527 0.8184 27 1 -0.3634 -0.5137 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.6980 -2.0060 -0.0633 31 1 3.8475 0.5969 -1.1152 32 1 6.3196 0.5312 -0.8963 33 1 9.4010 -0.2787 1.1027 34 1 10.1896 -1.8271 0.6281 35 1 10.0414 -3.4455 1.3542 36 1 9.5011 -1.3849 -1.4871 37 1 8.9987 -2.6743 -2.6066 38 1 7.8759 -2.0979 -1.3516 39 1 11.1436 -4.5235 -0.4283 40 1 10.6595 -4.2109 -2.1121 41 1 11.4444 -2.9286 -1.1590 42 1 7.5391 -4.1101 -0.2561 43 1 8.4180 -4.8891 -1.5940 44 1 8.9017 -5.2018 0.0900 45 1 3.6597 -2.9215 1.3143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234649915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:46 Heat of formation + Delta-G solvation = 77.720826 kcal Electronic energy + Delta-G solvation = -26856.224071 eV Core-core repulsion = 23186.393158 eV Total energy + Delta-G solvation = -3669.830913 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.176 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.54729 -41.71104 -40.41927 -38.59047 -35.85844 -34.78917 -33.15217 -31.84670 -31.23687 -30.48836 -30.41005 -29.12352 -27.60671 -25.26197 -24.79734 -23.95446 -22.63094 -21.47897 -19.61531 -19.40502 -18.81258 -18.68834 -18.40576 -18.07185 -17.82957 -17.17849 -16.32744 -16.12224 -15.50401 -15.19290 -15.12643 -14.96468 -14.89646 -14.64920 -14.44566 -14.35553 -14.21550 -14.12983 -14.03422 -13.85921 -13.67670 -13.56685 -13.42822 -13.24416 -13.21218 -12.34416 -11.99647 -11.85205 -11.41942 -11.21310 -11.05838 -10.57381 -10.32110 -10.05195 -10.01545 -8.75273 -7.92224 -5.90540 0.14414 0.25410 0.45468 1.59595 1.98497 2.10826 2.15515 2.18324 2.30709 2.43092 2.48963 2.56851 2.97260 3.04019 3.08432 3.19317 3.29784 3.40498 3.48114 3.50802 3.53449 3.63570 3.69540 3.70483 3.75385 3.93678 3.99709 4.01178 4.08363 4.14303 4.24230 4.28064 4.34220 4.50040 4.80334 4.83407 4.92136 4.97757 5.18999 5.36353 5.74571 6.07737 6.31654 6.58090 6.84107 7.07289 7.13249 7.21863 7.88115 9.38977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.527 6.527 4 N -0.669 5.669 5 C 0.042 3.958 6 C -0.040 4.040 7 C -0.185 4.185 8 C 0.328 3.672 9 O -0.318 6.318 10 C 0.177 3.823 11 H 0.076 0.924 12 C -0.616 4.616 13 H 0.073 0.927 14 C 0.048 3.952 15 N -0.870 5.870 16 Si 1.059 2.941 17 H -0.280 1.280 18 H -0.275 1.275 19 H -0.280 1.280 20 C -0.009 4.009 21 N -0.273 5.273 22 C -0.042 4.042 23 C -0.042 4.042 24 C -0.047 4.047 25 N -0.513 5.513 26 C 0.121 3.879 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.412 0.588 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.275 0.725 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.117 0.883 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.842 -14.027 -13.456 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.298 3.702 3 O -0.402 6.402 4 N -0.317 5.317 5 C -0.054 4.054 6 C -0.067 4.067 7 C -0.206 4.206 8 C 0.149 3.851 9 O -0.226 6.226 10 C 0.123 3.877 11 H 0.093 0.907 12 C -0.653 4.653 13 H 0.091 0.909 14 C -0.163 4.163 15 N -0.505 5.505 16 Si 0.885 3.115 17 H -0.205 1.205 18 H -0.199 1.199 19 H -0.206 1.206 20 C -0.128 4.128 21 N 0.069 4.931 22 C -0.184 4.184 23 C -0.184 4.184 24 C -0.189 4.189 25 N -0.236 5.236 26 C -0.038 4.038 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.248 0.752 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.089 0.911 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.138 0.862 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.129 0.871 44 H 0.136 0.864 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.970 -12.646 -12.101 17.529 hybrid contribution -1.530 -0.850 -1.165 2.103 sum -0.561 -13.495 -13.266 18.932 Atomic orbital electron populations 1.21930 0.90381 1.06270 1.04665 1.21094 0.91013 0.83083 0.75057 1.90767 1.70539 1.31277 1.47575 1.43415 1.04489 1.09955 1.73803 1.18574 0.83766 1.00521 1.02540 1.21464 0.92328 0.97328 0.95555 1.21098 0.94575 0.99930 1.04994 1.19671 0.84885 0.90165 0.90377 1.86375 1.15209 1.52853 1.68182 1.20500 0.87004 0.88671 0.91535 0.90661 1.22088 1.37947 1.15368 0.89861 0.90914 1.26059 0.91258 0.92081 1.06931 1.71016 1.39458 1.38295 1.01692 0.83599 0.77676 0.77466 0.72791 1.20537 1.19930 1.20584 1.25089 1.06111 1.03219 0.78372 1.46406 1.14255 1.15094 1.17351 1.24276 1.06681 0.93580 0.93829 1.24051 0.83962 1.05611 1.04787 1.24105 0.97570 0.89480 1.07699 1.67317 1.06579 1.27760 1.21934 1.22227 0.89387 0.97776 0.94388 0.88880 0.88412 0.88989 0.75231 0.83368 0.84156 0.91118 0.84669 0.85008 0.86200 0.87680 0.85657 0.86606 0.86988 0.86475 0.85955 0.87076 0.86419 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.48 10.32 36.00 0.37 0.85 16 2 C 0.51 0.64 7.79 -10.99 -0.09 0.56 16 3 O -0.53 -3.26 14.70 5.54 0.08 -3.18 16 4 N -0.67 0.49 5.35 -9.74 -0.05 0.44 16 5 C 0.04 0.08 6.29 -83.48 -0.52 -0.45 16 6 C -0.04 -0.13 8.79 -39.13 -0.34 -0.47 16 7 C -0.18 -0.58 10.04 -39.30 -0.39 -0.98 16 8 C 0.33 1.17 6.66 -17.14 -0.11 1.06 16 9 O -0.32 -0.94 5.18 -18.95 -0.10 -1.04 16 10 C 0.18 0.36 1.59 -27.88 -0.04 0.32 16 11 H 0.08 0.05 4.64 -51.93 -0.24 -0.19 16 12 C -0.62 -5.28 8.88 -34.44 -0.31 -5.59 16 13 H 0.07 0.76 7.82 -52.49 -0.41 0.35 16 14 C 0.05 0.51 5.24 -17.82 -0.09 0.42 16 15 N -0.87 -9.83 12.85 55.43 0.71 -9.12 16 16 Si 1.06 10.56 29.90 -169.99 -5.08 5.48 16 17 H -0.28 -2.53 7.11 56.52 0.40 -2.13 16 18 H -0.27 -3.08 7.11 56.52 0.40 -2.68 16 19 H -0.28 -3.02 7.11 56.52 0.40 -2.62 16 20 C -0.01 0.03 3.50 -3.82 -0.01 0.02 16 21 N -0.27 2.60 0.05 -395.62 -0.02 2.58 16 22 C -0.04 0.37 7.17 60.06 0.43 0.80 16 23 C -0.04 0.53 7.99 60.06 0.48 1.01 16 24 C -0.05 0.49 7.52 60.06 0.45 0.95 16 25 N -0.51 -1.70 8.63 -13.17 -0.11 -1.82 16 26 C 0.12 0.19 11.11 -17.35 -0.19 -0.01 16 27 H 0.09 -0.40 8.14 -51.93 -0.42 -0.83 16 28 H 0.10 -0.18 8.12 -51.93 -0.42 -0.60 16 29 H 0.09 -0.46 8.14 -51.93 -0.42 -0.88 16 30 H 0.41 -1.89 8.83 -40.82 -0.36 -2.25 16 31 H 0.15 0.55 6.47 -52.49 -0.34 0.21 16 32 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 33 H 0.28 2.42 4.74 -40.82 -0.19 2.23 16 34 H 0.14 -0.12 5.78 -51.93 -0.30 -0.42 16 35 H 0.13 -0.57 8.08 -51.93 -0.42 -0.98 16 36 H 0.12 -0.91 7.91 -51.92 -0.41 -1.32 16 37 H 0.10 -1.25 7.98 -51.93 -0.41 -1.67 16 38 H 0.13 -0.77 5.09 -51.93 -0.26 -1.03 16 39 H 0.12 -1.50 8.11 -51.93 -0.42 -1.93 16 40 H 0.11 -1.61 8.06 -51.93 -0.42 -2.03 16 41 H 0.12 -1.39 8.14 -51.93 -0.42 -1.82 16 42 H 0.12 -0.95 5.83 -51.93 -0.30 -1.26 16 43 H 0.11 -1.45 8.14 -51.93 -0.42 -1.88 16 44 H 0.12 -1.35 8.14 -51.93 -0.42 -1.77 16 45 H 0.16 -0.20 8.06 -52.49 -0.42 -0.62 16 LS Contribution 355.13 15.07 5.35 5.35 Total: 0.00 -22.78 355.13 -6.27 -29.05 By element: Atomic # 1 Polarization: -19.57 SS G_CDS: -6.67 Total: -26.25 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -0.38 Total: -1.50 kcal Atomic # 7 Polarization: -8.45 SS G_CDS: 0.53 Total: -7.92 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.02 Total: -4.21 kcal Atomic # 14 Polarization: 10.56 SS G_CDS: -5.08 Total: 5.48 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -22.78 -6.27 -29.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234649915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.773 kcal (2) G-P(sol) polarization free energy of solvation -22.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds