Wall clock time and date at job start Tue Mar 31 2020 09:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21296 * 119.99775 * 2 1 4 4 N 1.34773 * 120.00245 * 179.97438 * 2 1 3 5 5 C 1.40147 * 120.00285 * 184.37127 * 4 2 1 6 6 C 1.39378 * 120.42177 * 323.12027 * 5 4 2 7 7 C 1.38325 * 118.42255 * 179.75099 * 6 5 4 8 8 C 1.38911 * 119.18345 * 0.51200 * 7 6 5 9 9 O 1.35748 * 119.60819 * 179.75272 * 8 7 6 10 10 C 1.42896 * 117.00165 * 179.72685 * 9 8 7 11 11 H 1.09003 * 109.47069 * 30.00192 * 10 9 8 12 12 C 1.50699 * 109.47460 * 270.00249 * 10 9 8 13 13 H 1.07998 * 120.00339 * 122.87070 * 12 10 9 14 14 C 1.37880 * 119.99851 * 302.87357 * 12 10 9 15 15 N 1.31519 * 119.99920 * 3.31854 * 14 12 10 16 16 Si 1.86801 * 120.00001 * 183.32457 * 14 12 10 17 17 H 1.48496 * 109.47345 * 59.99632 * 16 14 12 18 18 H 1.48504 * 109.47013 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46891 * 299.99204 * 16 14 12 20 20 C 1.52999 * 109.47413 * 150.00153 * 10 9 8 21 21 N 1.46908 * 109.46856 * 292.59684 * 20 10 9 22 22 C 1.46894 * 109.47196 * 64.97064 * 21 20 10 23 23 C 1.46900 * 109.46915 * 184.97574 * 21 20 10 24 24 C 1.46898 * 109.47023 * 304.97195 * 21 20 10 25 25 N 1.32207 * 120.78327 * 359.47604 * 8 7 6 26 26 C 1.31957 * 121.71824 * 0.27577 * 25 8 7 27 27 H 1.09000 * 109.47312 * 240.00521 * 1 2 3 28 28 H 1.09001 * 109.47178 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46890 * 119.99997 * 1 2 3 30 30 H 0.96998 * 119.99703 * 4.38004 * 4 2 1 31 31 H 1.07992 * 120.78816 * 0.02562 * 6 5 4 32 32 H 1.07992 * 120.40774 * 180.28704 * 7 6 5 33 33 H 0.97003 * 119.99729 * 5.75227 * 15 14 12 34 34 H 1.08996 * 109.47185 * 52.58904 * 20 10 9 35 35 H 1.08998 * 109.47269 * 172.59956 * 20 10 9 36 36 H 1.09008 * 109.47128 * 49.43480 * 22 21 20 37 37 H 1.09001 * 109.47365 * 169.43000 * 22 21 20 38 38 H 1.08995 * 109.47377 * 289.43738 * 22 21 20 39 39 H 1.08997 * 109.47552 * 59.99915 * 23 21 20 40 40 H 1.08998 * 109.47046 * 179.97438 * 23 21 20 41 41 H 1.08999 * 109.47096 * 299.99754 * 23 21 20 42 42 H 1.09004 * 109.47062 * 60.00082 * 24 21 20 43 43 H 1.09002 * 109.47520 * 180.02562 * 24 21 20 44 44 H 1.09002 * 109.47713 * 300.00416 * 24 21 20 45 45 H 1.07998 * 119.63091 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5793 -1.1689 0.0930 6 6 4.3299 -0.1819 -0.5434 7 6 5.7072 -0.2202 -0.4204 8 6 6.2930 -1.2399 0.3190 9 8 7.6441 -1.2887 0.4411 10 6 8.1870 -2.3575 1.2188 11 1 7.5307 -3.2253 1.1520 12 6 8.3017 -1.9241 2.6576 13 1 7.8083 -2.4908 3.4333 14 6 9.0366 -0.8039 2.9836 15 7 9.5831 -0.0766 2.0338 16 14 9.2561 -0.3194 4.7743 17 1 9.9353 -1.4193 5.5050 18 1 10.0814 0.9124 4.8561 19 1 7.9264 -0.0663 5.3851 20 6 9.5731 -2.7241 0.6846 21 7 9.4415 -3.3130 -0.6548 22 6 8.9207 -2.3024 -1.5850 23 6 10.7571 -3.7736 -1.1185 24 6 8.5153 -4.4518 -0.6002 25 7 5.5501 -2.1603 0.9096 26 6 4.2337 -2.1527 0.8184 27 1 -0.3634 -0.5137 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.6980 -2.0060 -0.0633 31 1 3.8475 0.5969 -1.1152 32 1 6.3196 0.5312 -0.8963 33 1 9.4010 -0.2787 1.1027 34 1 10.1896 -1.8271 0.6281 35 1 10.0414 -3.4455 1.3542 36 1 9.5011 -1.3849 -1.4871 37 1 8.9987 -2.6743 -2.6066 38 1 7.8759 -2.0979 -1.3516 39 1 11.1436 -4.5235 -0.4283 40 1 10.6595 -4.2109 -2.1121 41 1 11.4444 -2.9286 -1.1590 42 1 7.5391 -4.1101 -0.2561 43 1 8.4180 -4.8891 -1.5940 44 1 8.9017 -5.2018 0.0900 45 1 3.6597 -2.9215 1.3143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234649915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:45 Heat of formation + Delta-G solvation = 65.375720 kcal Electronic energy + Delta-G solvation = -26856.759395 eV Core-core repulsion = 23186.393158 eV Total energy + Delta-G solvation = -3670.366237 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.176 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.01063 -41.82896 -40.54989 -38.75809 -36.07014 -35.23431 -33.36160 -31.93223 -31.17952 -29.71704 -29.61108 -29.12265 -27.73916 -25.44684 -24.61362 -24.05305 -22.60604 -21.59632 -19.93038 -19.47406 -18.87673 -18.25713 -17.94587 -17.84950 -17.66959 -17.17226 -16.43048 -16.24821 -15.79259 -15.56410 -15.23130 -14.86237 -14.70864 -14.44273 -14.24625 -14.23161 -13.93600 -13.66984 -13.45254 -13.37791 -13.35065 -13.31958 -13.23301 -13.09725 -13.07029 -12.78155 -12.57317 -12.12509 -11.99980 -11.63963 -11.25502 -10.84275 -10.82442 -10.68910 -10.30371 -8.95469 -8.63348 -6.60060 0.06591 0.22260 0.83301 1.46618 1.51674 1.56453 1.69004 1.96773 2.21552 2.40079 2.70580 2.78378 2.92326 2.98469 3.15410 3.37331 3.70860 3.80786 3.85975 3.90074 4.03516 4.10822 4.12072 4.17808 4.22358 4.31326 4.35889 4.45370 4.47392 4.52538 4.63017 4.64659 4.65714 4.71606 4.71957 4.82232 4.90789 5.03939 5.06556 5.21305 5.58985 5.63759 6.02927 6.35791 6.41562 6.57565 6.88128 7.10497 7.19941 8.70913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.502 3.498 3 O -0.585 6.585 4 N -0.652 5.652 5 C 0.040 3.960 6 C -0.051 4.051 7 C -0.194 4.194 8 C 0.315 3.685 9 O -0.316 6.316 10 C 0.176 3.824 11 H 0.089 0.911 12 C -0.622 4.622 13 H 0.046 0.954 14 C 0.021 3.979 15 N -0.907 5.907 16 Si 1.074 2.926 17 H -0.264 1.264 18 H -0.295 1.295 19 H -0.297 1.297 20 C 0.012 3.988 21 N -0.258 5.258 22 C -0.044 4.044 23 C -0.045 4.045 24 C -0.050 4.050 25 N -0.525 5.525 26 C 0.123 3.877 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.433 0.567 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.285 0.715 34 H 0.112 0.888 35 H 0.145 0.855 36 H 0.104 0.896 37 H 0.147 0.853 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.146 0.854 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.148 0.852 44 H 0.131 0.869 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 -17.067 -15.323 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.293 3.707 3 O -0.464 6.464 4 N -0.301 5.301 5 C -0.056 4.056 6 C -0.078 4.078 7 C -0.215 4.215 8 C 0.137 3.863 9 O -0.224 6.224 10 C 0.122 3.878 11 H 0.107 0.893 12 C -0.660 4.660 13 H 0.065 0.935 14 C -0.186 4.186 15 N -0.544 5.544 16 Si 0.901 3.099 17 H -0.189 1.189 18 H -0.221 1.221 19 H -0.224 1.224 20 C -0.109 4.109 21 N 0.084 4.916 22 C -0.185 4.185 23 C -0.185 4.185 24 C -0.191 4.191 25 N -0.248 5.248 26 C -0.036 4.036 27 H 0.133 0.867 28 H 0.105 0.895 29 H 0.139 0.861 30 H 0.273 0.727 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.162 0.838 36 H 0.123 0.877 37 H 0.165 0.835 38 H 0.116 0.884 39 H 0.146 0.854 40 H 0.164 0.836 41 H 0.130 0.870 42 H 0.111 0.889 43 H 0.166 0.834 44 H 0.150 0.850 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.444 -15.752 -13.969 21.059 hybrid contribution -1.497 0.021 -0.624 1.622 sum -1.053 -15.731 -14.593 21.484 Atomic orbital electron populations 1.21949 0.86898 1.06385 1.07040 1.21921 0.92657 0.82494 0.73624 1.90749 1.71894 1.33362 1.50393 1.43345 1.03474 1.10693 1.72598 1.18670 0.84976 0.99985 1.01980 1.21477 0.92504 0.97722 0.96146 1.21145 0.94812 1.00127 1.05447 1.19794 0.85216 0.90512 0.90827 1.86371 1.15049 1.53206 1.67789 1.20491 0.89985 0.88391 0.88972 0.89307 1.22286 1.36347 1.14346 0.93070 0.93527 1.26150 0.92375 0.93038 1.07027 1.70967 1.41390 1.39607 1.02440 0.83398 0.76286 0.76864 0.73304 1.18917 1.22112 1.22410 1.24232 1.01330 1.03227 0.82120 1.45996 1.16336 1.15140 1.14086 1.24273 1.04590 0.93758 0.95912 1.24288 0.81687 1.05751 1.06755 1.24267 0.95692 0.88828 1.10331 1.67351 1.07474 1.27834 1.22119 1.22702 0.88976 0.98123 0.93820 0.86673 0.89488 0.86131 0.72727 0.84422 0.84018 0.90157 0.86976 0.83757 0.87740 0.83454 0.88379 0.85417 0.83608 0.86996 0.88878 0.83358 0.85040 0.79544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 1.11 10.32 71.23 0.74 1.85 16 2 C 0.50 1.37 7.79 87.66 0.68 2.05 16 3 O -0.58 -8.33 14.70 -3.08 -0.05 -8.37 16 4 N -0.65 1.29 5.35 -303.11 -1.62 -0.33 16 5 C 0.04 0.17 6.29 38.18 0.24 0.41 16 6 C -0.05 -0.42 8.79 22.57 0.20 -0.22 16 7 C -0.19 -1.67 10.04 22.45 0.23 -1.44 16 8 C 0.32 2.81 6.66 84.80 0.56 3.37 16 9 O -0.32 -2.46 5.18 -90.73 -0.47 -2.93 16 10 C 0.18 0.95 1.59 29.85 0.05 0.99 16 11 H 0.09 0.19 4.64 -2.39 -0.01 0.18 16 12 C -0.62 -12.04 8.88 25.60 0.23 -11.81 16 13 H 0.05 1.09 7.82 -2.91 -0.02 1.07 16 14 C 0.02 0.52 5.24 84.65 0.44 0.96 16 15 N -0.91 -22.88 12.85 21.45 0.28 -22.60 16 16 Si 1.07 24.14 29.90 68.60 2.05 26.19 16 17 H -0.26 -5.10 7.11 99.48 0.71 -4.39 16 18 H -0.30 -7.52 7.11 99.48 0.71 -6.81 16 19 H -0.30 -7.31 7.11 99.48 0.71 -6.60 16 20 C 0.01 -0.08 3.50 86.30 0.30 0.22 16 21 N -0.26 5.24 0.05 ******* -0.07 5.17 16 22 C -0.04 0.80 7.17 127.69 0.92 1.71 16 23 C -0.04 1.22 7.99 127.69 1.02 2.24 16 24 C -0.05 1.16 7.52 127.69 0.96 2.12 16 25 N -0.52 -3.94 8.63 -308.44 -2.66 -6.60 16 26 C 0.12 0.37 11.11 84.77 0.94 1.31 16 27 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 28 H 0.09 -0.34 8.12 -2.39 -0.02 -0.36 16 29 H 0.12 -1.49 8.14 -2.39 -0.02 -1.51 16 30 H 0.43 -4.73 8.83 -92.71 -0.82 -5.55 16 31 H 0.14 1.41 6.47 -2.91 -0.02 1.39 16 32 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 33 H 0.28 5.74 4.74 -92.71 -0.44 5.30 16 34 H 0.11 -0.06 5.78 -2.39 -0.01 -0.07 16 35 H 0.14 -1.29 8.08 -2.39 -0.02 -1.31 16 36 H 0.10 -1.51 7.91 -2.38 -0.02 -1.52 16 37 H 0.15 -3.91 7.98 -2.39 -0.02 -3.93 16 38 H 0.10 -1.14 5.09 -2.39 -0.01 -1.15 16 39 H 0.13 -3.68 8.11 -2.39 -0.02 -3.70 16 40 H 0.15 -4.83 8.06 -2.39 -0.02 -4.85 16 41 H 0.11 -2.82 8.14 -2.39 -0.02 -2.84 16 42 H 0.09 -1.50 5.83 -2.39 -0.01 -1.51 16 43 H 0.15 -4.45 8.14 -2.39 -0.02 -4.47 16 44 H 0.13 -3.34 8.14 -2.39 -0.02 -3.36 16 45 H 0.19 -0.76 8.06 -2.91 -0.02 -0.78 16 Total: 0.00 -58.26 355.13 5.47 -52.79 By element: Atomic # 1 Polarization: -47.58 SS G_CDS: 0.51 Total: -47.07 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 7.50 Total: 3.76 kcal Atomic # 7 Polarization: -20.28 SS G_CDS: -4.08 Total: -24.36 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.51 Total: -11.30 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: 2.05 Total: 26.19 kcal Total: -58.26 5.47 -52.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234649915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.161 kcal (2) G-P(sol) polarization free energy of solvation -58.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds