Wall clock time and date at job start Tue Mar 31 2020 09:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35731 * 116.99815 * 180.02562 * 3 2 1 5 5 N 1.32222 * 119.69528 * 0.02562 * 4 3 2 6 6 C 1.31970 * 121.67091 * 179.97438 * 5 4 3 7 7 C 1.38061 * 120.87816 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.34563 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47353 * 89.99561 * 8 7 6 10 10 C 1.46853 * 111.00071 * 294.21129 * 9 8 7 11 11 C 1.53034 * 109.52424 * 174.15857 * 10 9 8 12 12 C 1.53120 * 109.27976 * 59.18136 * 11 10 9 13 13 C 1.50695 * 109.57611 * 182.40671 * 12 11 10 14 14 H 1.08001 * 119.99827 * 119.71278 * 13 12 11 15 15 C 1.37874 * 120.00217 * 299.71275 * 13 12 11 16 16 N 1.31516 * 119.99807 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00082 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47353 * 90.00166 * 17 15 13 19 19 H 1.48506 * 109.46785 * 210.00285 * 17 15 13 20 20 H 1.48497 * 109.47090 * 329.99909 * 17 15 13 21 21 C 1.53120 * 109.15813 * 302.34682 * 12 11 10 22 22 C 1.46846 * 111.00322 * 170.00043 * 9 8 7 23 23 C 1.38792 * 119.31000 * 359.97438 * 7 6 5 24 24 C 1.38579 * 118.46181 * 359.76182 * 23 7 6 25 25 F 1.35105 * 120.46672 * 180.24403 * 24 23 7 26 26 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 31 31 H 1.08001 * 119.56158 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47231 * 209.99318 * 8 7 6 33 33 H 1.08997 * 109.47429 * 329.99539 * 8 7 6 34 34 H 1.08999 * 109.45805 * 294.17430 * 10 9 8 35 35 H 1.08999 * 109.46351 * 54.14035 * 10 9 8 36 36 H 1.08995 * 109.50367 * 299.23879 * 11 10 9 37 37 H 1.09001 * 109.53541 * 179.13612 * 11 10 9 38 38 H 1.09002 * 109.52140 * 62.24556 * 12 11 10 39 39 H 0.97003 * 119.99992 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.49969 * 297.70713 * 21 12 11 41 41 H 1.08995 * 109.53789 * 177.61745 * 21 12 11 42 42 H 1.08996 * 109.46430 * 305.85386 * 22 9 8 43 43 H 1.09000 * 109.46302 * 65.83101 * 22 9 8 44 44 H 1.07992 * 120.77125 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 7 4.1518 0.4724 -0.0015 6 6 5.4653 0.6002 -0.0026 7 6 6.0558 1.8481 -0.0022 8 6 7.5569 1.9800 -0.0040 9 7 8.0430 2.0241 -1.3895 10 6 7.7984 0.7481 -2.0740 11 6 8.1824 0.8774 -3.5497 12 6 9.6614 1.2593 -3.6556 13 6 10.0321 1.4462 -5.1042 14 1 10.4003 2.4014 -5.4485 15 6 9.9013 0.3979 -5.9901 16 7 9.4524 -0.7651 -5.5710 17 14 10.3615 0.6294 -7.7857 18 1 11.7938 0.2873 -7.9777 19 1 9.5229 -0.2589 -8.6301 20 1 10.1337 2.0437 -8.1767 21 6 9.8987 2.5663 -2.8939 22 6 9.4649 2.3881 -1.4372 23 6 5.2524 2.9799 -0.0011 24 6 3.8767 2.8133 -0.0056 25 9 3.0566 3.8870 -0.0098 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 6.0865 -0.2833 -0.0038 32 1 7.8416 2.8980 0.5103 33 1 7.9975 1.1249 0.5085 34 1 8.3989 -0.0340 -1.6095 35 1 6.7423 0.4901 -1.9948 36 1 7.5726 1.6499 -4.0181 37 1 8.0153 -0.0741 -4.0545 38 1 10.2737 0.4687 -3.2219 39 1 9.3607 -1.5028 -6.1942 40 1 9.3159 3.3654 -3.3521 41 1 10.9576 2.8219 -2.9295 42 1 9.6192 3.3213 -0.8955 43 1 10.0576 1.5982 -0.9759 44 1 5.6893 3.9675 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236694821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:42 Heat of formation + Delta-G solvation = -54.111641 kcal Electronic energy + Delta-G solvation = -25426.951610 eV Core-core repulsion = 21679.713879 eV Total energy + Delta-G solvation = -3747.237731 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.90034 -40.73761 -38.79272 -37.76963 -34.37814 -32.66587 -32.14959 -31.35562 -29.95244 -29.69861 -26.63892 -24.80975 -24.48393 -22.65203 -22.34071 -21.97676 -20.99778 -18.74604 -18.63648 -17.66874 -17.00923 -16.72700 -16.38294 -15.52999 -15.34847 -15.27296 -14.62314 -14.45450 -14.17399 -13.98126 -13.71046 -13.26402 -13.13407 -12.94514 -12.76381 -12.64435 -12.61170 -12.25811 -11.97323 -11.71204 -11.65238 -11.45459 -10.98278 -10.89372 -10.74340 -10.49736 -10.24591 -10.03019 -9.86340 -9.80969 -9.44257 -8.99079 -8.72692 -8.43064 -8.29649 -7.83286 -5.97490 -4.02587 0.83939 1.00657 2.72295 3.31359 3.38345 3.41920 3.43778 3.94060 4.19019 4.40019 4.45452 4.56736 4.79476 4.80237 4.82430 4.96982 5.16007 5.23367 5.33037 5.36940 5.48541 5.58581 5.60476 5.67238 5.74359 5.80181 5.84387 5.99766 6.10632 6.17081 6.26638 6.27973 6.56874 6.59801 6.82556 7.02736 7.05077 7.12131 7.39964 7.55029 7.58588 7.61742 7.80836 8.03742 8.14577 8.48058 9.00974 9.61923 11.08704 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016515 B = 0.003219 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.029423 B = 8695.931564 C = 9561.577772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.066 3.934 3 O -0.303 6.303 4 C 0.292 3.708 5 N -0.514 5.514 6 C 0.138 3.862 7 C -0.127 4.127 8 C 0.098 3.902 9 N -0.532 5.532 10 C 0.054 3.946 11 C -0.104 4.104 12 C 0.048 3.952 13 C -0.510 4.510 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.107 4.107 22 C 0.061 3.939 23 C -0.055 4.055 24 C 0.028 3.972 25 F -0.127 7.127 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.165 0.835 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.025 0.975 35 H 0.056 0.944 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.021 0.979 39 H 0.259 0.741 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.026 0.974 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.585 2.706 14.933 19.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.211 6.211 4 C 0.111 3.889 5 N -0.236 5.236 6 C -0.018 4.018 7 C -0.130 4.130 8 C -0.031 4.031 9 N -0.257 5.257 10 C -0.074 4.074 11 C -0.142 4.142 12 C 0.029 3.971 13 C -0.548 4.548 14 H 0.072 0.928 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.145 4.145 22 C -0.066 4.066 23 C -0.082 4.082 24 C 0.006 3.994 25 F -0.105 7.105 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.182 0.818 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.526 2.275 14.608 19.377 hybrid contribution 0.920 0.156 -0.660 1.143 sum -11.607 2.431 13.948 18.308 Atomic orbital electron populations 1.21820 0.92948 1.02906 1.03344 1.22651 0.94767 0.80769 1.02766 1.86277 1.16011 1.30995 1.87793 1.19795 0.85026 0.88746 0.95287 1.67450 1.06520 1.31203 1.18443 1.22456 0.88761 0.97381 0.93163 1.20567 0.97444 0.92637 1.02321 1.20899 0.88780 1.01663 0.91719 1.62053 1.18299 1.33354 1.12017 1.22371 0.99030 0.87933 0.98025 1.21653 0.98773 1.03288 0.90467 1.18682 0.92568 0.91267 0.94534 1.21202 1.42805 0.97262 0.93579 0.92768 1.24965 0.95212 0.95282 0.98557 1.69871 1.46525 1.01986 1.34735 0.86640 0.78291 0.78035 0.85299 1.20809 1.21300 1.19957 1.21685 0.99033 1.01227 0.92518 1.22130 0.86549 0.98554 0.99353 1.21376 0.89815 1.01126 0.95842 1.17597 0.88495 0.81701 1.11578 1.91512 1.71693 1.52966 1.94366 0.91557 0.90201 0.91715 0.91508 0.91280 0.81765 0.89932 0.93734 0.95701 0.92580 0.93912 0.88939 0.96135 0.93113 0.92458 0.93067 0.92271 0.95560 0.82754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.07 0.69 6.03 37.16 0.22 0.91 16 3 O -0.30 -4.10 9.99 -18.90 -0.19 -4.29 16 4 C 0.29 4.15 7.50 -17.07 -0.13 4.02 16 5 N -0.51 -7.12 9.22 -13.27 -0.12 -7.24 16 6 C 0.14 1.78 9.04 -17.56 -0.16 1.62 16 7 C -0.13 -1.60 4.90 -104.48 -0.51 -2.11 16 8 C 0.10 1.23 5.14 -4.98 -0.03 1.20 16 9 N -0.53 -8.71 4.65 -236.12 -1.10 -9.81 16 10 C 0.05 0.99 5.16 -3.83 -0.02 0.97 16 11 C -0.10 -2.40 5.13 -26.65 -0.14 -2.54 16 12 C 0.05 1.17 2.16 -91.65 -0.20 0.97 16 13 C -0.51 -13.87 8.56 -34.44 -0.29 -14.17 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 16 N -0.89 -25.20 11.37 55.43 0.63 -24.57 16 17 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.11 -2.16 5.32 -26.65 -0.14 -2.30 16 22 C 0.06 1.02 5.46 -3.84 -0.02 1.00 16 23 C -0.06 -0.68 9.84 -39.25 -0.39 -1.07 16 24 C 0.03 0.39 7.35 -39.14 -0.29 0.10 16 25 F -0.13 -1.79 17.13 2.25 0.04 -1.75 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 30 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.17 1.86 7.95 -52.49 -0.42 1.44 16 32 H 0.08 0.89 7.94 -51.93 -0.41 0.47 16 33 H 0.04 0.52 8.07 -51.93 -0.42 0.10 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.99 5.75 -51.93 -0.30 0.69 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.84 8.02 -51.93 -0.42 0.42 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -29.38 357.90 -9.06 -38.44 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.90 Total: -1.79 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -1.80 Total: -10.62 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -0.59 Total: -41.62 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.19 Total: -4.29 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.38 -9.06 -38.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236694821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.667 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds