Wall clock time and date at job start Tue Mar 31 2020 09:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35731 * 116.99815 * 180.02562 * 3 2 1 5 5 N 1.32222 * 119.69528 * 0.02562 * 4 3 2 6 6 C 1.31970 * 121.67091 * 179.97438 * 5 4 3 7 7 C 1.38061 * 120.87816 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.34563 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47353 * 89.99561 * 8 7 6 10 10 C 1.46853 * 111.00071 * 294.21129 * 9 8 7 11 11 C 1.53034 * 109.52424 * 174.15857 * 10 9 8 12 12 C 1.53120 * 109.27976 * 59.18136 * 11 10 9 13 13 C 1.50695 * 109.57611 * 182.40671 * 12 11 10 14 14 H 1.08001 * 119.99827 * 119.71278 * 13 12 11 15 15 C 1.37874 * 120.00217 * 299.71275 * 13 12 11 16 16 N 1.31516 * 119.99807 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00082 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47353 * 90.00166 * 17 15 13 19 19 H 1.48506 * 109.46785 * 210.00285 * 17 15 13 20 20 H 1.48497 * 109.47090 * 329.99909 * 17 15 13 21 21 C 1.53120 * 109.15813 * 302.34682 * 12 11 10 22 22 C 1.46846 * 111.00322 * 170.00043 * 9 8 7 23 23 C 1.38792 * 119.31000 * 359.97438 * 7 6 5 24 24 C 1.38579 * 118.46181 * 359.76182 * 23 7 6 25 25 F 1.35105 * 120.46672 * 180.24403 * 24 23 7 26 26 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 31 31 H 1.08001 * 119.56158 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47231 * 209.99318 * 8 7 6 33 33 H 1.08997 * 109.47429 * 329.99539 * 8 7 6 34 34 H 1.08999 * 109.45805 * 294.17430 * 10 9 8 35 35 H 1.08999 * 109.46351 * 54.14035 * 10 9 8 36 36 H 1.08995 * 109.50367 * 299.23879 * 11 10 9 37 37 H 1.09001 * 109.53541 * 179.13612 * 11 10 9 38 38 H 1.09002 * 109.52140 * 62.24556 * 12 11 10 39 39 H 0.97003 * 119.99992 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.49969 * 297.70713 * 21 12 11 41 41 H 1.08995 * 109.53789 * 177.61745 * 21 12 11 42 42 H 1.08996 * 109.46430 * 305.85386 * 22 9 8 43 43 H 1.09000 * 109.46302 * 65.83101 * 22 9 8 44 44 H 1.07992 * 120.77125 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5252 -0.0005 5 7 4.1518 0.4724 -0.0015 6 6 5.4653 0.6002 -0.0026 7 6 6.0558 1.8481 -0.0022 8 6 7.5569 1.9800 -0.0040 9 7 8.0430 2.0241 -1.3895 10 6 7.7984 0.7481 -2.0740 11 6 8.1824 0.8774 -3.5497 12 6 9.6614 1.2593 -3.6556 13 6 10.0321 1.4462 -5.1042 14 1 10.4003 2.4014 -5.4485 15 6 9.9013 0.3979 -5.9901 16 7 9.4524 -0.7651 -5.5710 17 14 10.3615 0.6294 -7.7857 18 1 11.7938 0.2873 -7.9777 19 1 9.5229 -0.2589 -8.6301 20 1 10.1337 2.0437 -8.1767 21 6 9.8987 2.5663 -2.8939 22 6 9.4649 2.3881 -1.4372 23 6 5.2524 2.9799 -0.0011 24 6 3.8767 2.8133 -0.0056 25 9 3.0566 3.8870 -0.0098 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 6.0865 -0.2833 -0.0038 32 1 7.8416 2.8980 0.5103 33 1 7.9975 1.1249 0.5085 34 1 8.3989 -0.0340 -1.6095 35 1 6.7423 0.4901 -1.9948 36 1 7.5726 1.6499 -4.0181 37 1 8.0153 -0.0741 -4.0545 38 1 10.2737 0.4687 -3.2219 39 1 9.3607 -1.5028 -6.1942 40 1 9.3159 3.3654 -3.3521 41 1 10.9576 2.8219 -2.9295 42 1 9.6192 3.3213 -0.8955 43 1 10.0576 1.5982 -0.9759 44 1 5.6893 3.9675 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236694821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:41 Heat of formation + Delta-G solvation = -72.555998 kcal Electronic energy + Delta-G solvation = -25427.751418 eV Core-core repulsion = 21679.713879 eV Total energy + Delta-G solvation = -3748.037538 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.95143 -41.74194 -39.99547 -38.99223 -35.96576 -34.10551 -33.06333 -32.68940 -31.47302 -30.95166 -28.14821 -26.18556 -25.59358 -23.76360 -23.65662 -23.33023 -22.30178 -20.31735 -19.69506 -18.69497 -18.44047 -18.03250 -17.69364 -16.89546 -16.43729 -16.31519 -16.26393 -15.82908 -15.34872 -15.01649 -14.78738 -14.66549 -14.42827 -14.20136 -14.17536 -14.04655 -13.44321 -13.36794 -13.19140 -13.00260 -12.92634 -12.84287 -12.51227 -12.47069 -12.24140 -11.99706 -11.82409 -11.74219 -11.33120 -10.89633 -10.85561 -10.74493 -10.60704 -10.35216 -9.47922 -9.10234 -8.06921 -6.19430 -0.17125 0.01474 1.40331 1.41846 1.51410 1.81092 2.40753 2.44383 2.95549 3.19217 3.21023 3.23164 3.53017 3.86328 3.96028 4.04679 4.16218 4.23790 4.26960 4.34853 4.41601 4.43849 4.47391 4.62356 4.71772 4.80246 4.81818 4.84087 4.91411 4.95213 5.03621 5.08722 5.16419 5.18013 5.27929 5.34759 5.38031 5.60250 5.64805 6.03520 6.04885 6.07436 6.30767 6.35832 6.43623 6.57449 6.92762 7.48165 8.97238 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016515 B = 0.003219 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.029423 B = 8695.931564 C = 9561.577772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.060 3.940 3 O -0.317 6.317 4 C 0.280 3.720 5 N -0.525 5.525 6 C 0.134 3.866 7 C -0.130 4.130 8 C 0.102 3.898 9 N -0.541 5.541 10 C 0.069 3.931 11 C -0.095 4.095 12 C 0.044 3.956 13 C -0.532 4.532 14 H 0.049 0.951 15 C 0.012 3.988 16 N -0.916 5.916 17 Si 0.949 3.051 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.270 1.270 21 C -0.101 4.101 22 C 0.068 3.932 23 C -0.046 4.046 24 C 0.011 3.989 25 F -0.133 7.133 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.179 0.821 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.024 0.976 35 H 0.065 0.935 36 H 0.023 0.977 37 H 0.057 0.943 38 H -0.009 1.009 39 H 0.259 0.741 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.096 0.904 43 H 0.029 0.971 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.510 3.551 16.162 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 O -0.225 6.225 4 C 0.099 3.901 5 N -0.248 5.248 6 C -0.022 4.022 7 C -0.132 4.132 8 C -0.026 4.026 9 N -0.266 5.266 10 C -0.059 4.059 11 C -0.134 4.134 12 C 0.025 3.975 13 C -0.570 4.570 14 H 0.067 0.933 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.775 3.225 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.195 1.195 21 C -0.139 4.139 22 C -0.059 4.059 23 C -0.073 4.073 24 C -0.011 4.011 25 F -0.111 7.111 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.195 0.805 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.010 0.990 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.114 0.886 43 H 0.047 0.953 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.454 3.129 15.851 20.400 hybrid contribution 0.885 -0.130 -1.042 1.374 sum -11.569 3.000 14.809 19.030 Atomic orbital electron populations 1.21840 0.90838 1.04400 1.03337 1.22868 0.96429 0.79612 1.02530 1.86273 1.15893 1.32649 1.87719 1.20024 0.85413 0.89149 0.95469 1.67473 1.07018 1.31303 1.19015 1.22781 0.88634 0.98269 0.92498 1.20617 0.97650 0.92499 1.02471 1.20992 0.88256 1.03936 0.89385 1.61944 1.18324 1.31664 1.14676 1.22051 0.99404 0.89385 0.95053 1.21401 0.97834 1.00530 0.93617 1.18662 0.92575 0.92619 0.93595 1.21615 1.42831 0.97094 0.95498 0.93256 1.25711 0.95296 0.95133 1.02495 1.70008 1.47208 1.02534 1.35873 0.85693 0.78152 0.78018 0.80618 1.20120 1.21066 1.19505 1.21554 0.99332 0.98309 0.94743 1.22056 0.86580 1.00499 0.96760 1.21632 0.89143 1.02157 0.94340 1.17805 0.89138 0.81508 1.12615 1.91491 1.71989 1.53123 1.94538 0.91892 0.87935 0.91338 0.91159 0.92058 0.80453 0.87018 0.92140 0.95733 0.91671 0.95849 0.92422 0.99048 0.93201 0.93339 0.92720 0.88589 0.95253 0.80571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.06 1.24 6.03 71.98 0.43 1.67 16 3 O -0.32 -8.54 9.99 -90.54 -0.90 -9.44 16 4 C 0.28 7.80 7.50 84.84 0.64 8.43 16 5 N -0.53 -14.13 9.22 -308.76 -2.85 -16.98 16 6 C 0.13 3.22 9.04 84.63 0.77 3.99 16 7 C -0.13 -2.93 4.90 -19.77 -0.10 -3.02 16 8 C 0.10 2.15 5.14 85.56 0.44 2.59 16 9 N -0.54 -16.26 4.65 -900.95 -4.19 -20.45 16 10 C 0.07 2.49 5.16 86.32 0.45 2.93 16 11 C -0.10 -4.51 5.13 30.65 0.16 -4.35 16 12 C 0.04 2.17 2.16 -11.46 -0.02 2.15 16 13 C -0.53 -29.50 8.56 25.60 0.22 -29.29 16 14 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 15 C 0.01 0.67 5.31 84.65 0.45 1.12 16 16 N -0.92 -53.07 11.37 21.45 0.24 -52.83 16 17 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 C -0.10 -4.01 5.32 30.65 0.16 -3.84 16 22 C 0.07 2.06 5.46 86.33 0.47 2.53 16 23 C -0.05 -1.04 9.84 22.48 0.22 -0.82 16 24 C 0.01 0.30 7.35 22.56 0.17 0.47 16 25 F -0.13 -3.66 17.13 44.97 0.77 -2.89 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.36 8.11 -2.39 -0.02 1.34 16 30 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 31 H 0.18 3.67 7.95 -2.91 -0.02 3.64 16 32 H 0.11 1.80 7.94 -2.39 -0.02 1.78 16 33 H 0.06 1.15 8.07 -2.39 -0.02 1.13 16 34 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 2.23 5.75 -2.39 -0.01 2.21 16 36 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 3.11 6.17 -2.39 -0.01 3.09 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.10 2.26 8.02 -2.39 -0.02 2.24 16 43 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.18 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -64.91 357.90 1.27 -63.64 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.98 Total: 9.67 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 5.19 Total: -16.82 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -6.79 Total: -90.25 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.90 Total: -9.44 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.77 Total: -2.89 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -64.91 1.27 -63.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236694821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.913 kcal (2) G-P(sol) polarization free energy of solvation -64.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds