Wall clock time and date at job start Tue Mar 31 2020 10:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00046 * 2 1 4 4 H 1.48501 * 109.47352 * 90.00151 * 3 2 1 5 5 H 1.48500 * 109.47091 * 330.00276 * 3 2 1 6 6 H 1.48501 * 109.47314 * 210.00468 * 3 2 1 7 7 C 1.37882 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99639 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00111 * 179.97438 * 7 2 1 10 10 N 1.46916 * 109.47374 * 174.68856 * 9 7 2 11 11 C 1.44109 * 110.98996 * 302.51496 * 10 9 7 12 12 C 1.54026 * 111.98681 * 210.17340 * 11 10 9 13 13 C 1.54135 * 112.82892 * 341.74673 * 12 11 10 14 14 C 1.49891 * 114.93036 * 298.30218 * 13 12 11 15 15 C 1.54825 * 110.36855 * 209.22142 * 14 13 12 16 16 C 1.54556 * 101.26201 * 149.48256 * 15 14 13 17 17 N 1.46811 * 105.14447 * 332.77447 * 16 15 14 18 18 C 1.46500 * 124.53622 * 198.02280 * 17 16 15 19 19 C 1.54039 * 113.81660 * 218.57053 * 18 17 16 20 20 O 1.44448 * 85.42355 * 223.24091 * 19 18 17 21 21 C 1.44175 * 93.38391 * 24.08995 * 20 19 18 22 22 C 1.34912 * 111.13386 * 18.05907 * 17 16 15 23 23 O 1.21225 * 123.84312 * 179.46851 * 22 17 16 24 24 C 1.54366 * 110.03718 * 90.03620 * 14 13 12 25 25 C 1.45613 * 112.27105 * 296.08566 * 24 14 13 26 26 H 0.97002 * 120.00128 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47238 * 294.68980 * 9 7 2 28 28 H 1.09001 * 109.47212 * 54.68810 * 9 7 2 29 29 H 1.09246 * 108.75082 * 330.45903 * 11 10 9 30 30 H 1.08892 * 109.33780 * 88.86337 * 11 10 9 31 31 H 1.08801 * 109.46924 * 219.27033 * 12 11 10 32 32 H 1.09537 * 108.25571 * 101.84511 * 12 11 10 33 33 H 1.09469 * 108.45691 * 176.74800 * 13 12 11 34 34 H 1.09383 * 108.63577 * 60.09822 * 13 12 11 35 35 H 1.08824 * 110.73129 * 267.54269 * 15 14 13 36 36 H 1.08866 * 110.72548 * 31.55259 * 15 14 13 37 37 H 1.08954 * 110.34050 * 213.80214 * 16 15 14 38 38 H 1.08977 * 110.27648 * 91.64927 * 16 15 14 39 39 H 1.08998 * 112.99930 * 350.40049 * 18 17 16 40 40 H 1.09000 * 113.86210 * 337.34238 * 19 18 17 41 41 H 1.08991 * 113.86367 * 109.05166 * 19 18 17 42 42 H 1.09001 * 113.86451 * 221.76948 * 21 20 19 43 43 H 1.08991 * 113.86756 * 90.05849 * 21 20 19 44 44 H 1.09243 * 108.93459 * 175.18023 * 24 14 13 45 45 H 1.09234 * 108.92355 * 57.07911 * 24 14 13 46 46 H 1.09048 * 108.96711 * 300.16618 * 25 24 14 47 47 H 1.09362 * 108.52675 * 182.83238 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4466 2.6526 -0.7000 6 1 3.5467 1.4402 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0013 -2.5733 0.1266 11 6 3.4921 -3.1932 1.3237 12 6 4.4674 -4.2424 1.8896 13 6 5.5096 -4.7097 0.8545 14 6 4.9388 -5.3819 -0.3576 15 6 5.9460 -6.4100 -0.9281 16 6 4.9914 -7.4603 -1.5399 17 7 3.7554 -7.3590 -0.7541 18 6 2.7134 -8.3878 -0.7086 19 6 1.2811 -7.8216 -0.6800 20 8 1.0297 -8.8224 0.3308 21 6 2.4179 -8.9114 0.7096 22 6 3.7029 -6.1925 -0.0783 23 8 2.7787 -5.8667 0.6353 24 6 4.6487 -4.3359 -1.4551 25 6 3.6279 -3.3797 -1.0502 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.7646 -0.9349 28 1 3.8752 -0.6003 0.8375 29 1 3.3301 -2.4197 2.0781 30 1 2.5377 -3.6697 1.1050 31 1 3.9058 -5.0987 2.2571 32 1 4.9965 -3.7963 2.7386 33 1 6.1975 -5.4056 1.3452 34 1 6.0925 -3.8430 0.5296 35 1 6.5716 -5.9531 -1.6925 36 1 6.5474 -6.8435 -0.1308 37 1 5.4178 -8.4587 -1.4479 38 1 4.7942 -7.2275 -2.5860 39 1 2.8605 -9.1759 -1.4470 40 1 1.2190 -6.7976 -0.3117 41 1 0.7265 -7.9782 -1.6051 42 1 2.7629 -9.9306 0.8842 43 1 2.7037 -8.2210 1.5030 44 1 4.3154 -4.8527 -2.3580 45 1 5.5715 -3.7987 -1.6853 46 1 2.7045 -3.9176 -0.8332 47 1 3.4350 -2.7022 -1.8867 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:46 Heat of formation + Delta-G solvation = -22.118926 kcal Electronic energy + Delta-G solvation = -27950.386153 eV Core-core repulsion = 24327.996035 eV Total energy + Delta-G solvation = -3622.390118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55354 -39.87668 -37.48572 -36.48049 -34.28865 -32.31278 -31.94799 -30.45098 -28.20590 -27.65794 -26.61762 -25.72839 -24.76389 -22.51717 -22.01346 -21.82398 -20.48611 -19.00576 -18.24076 -17.09711 -16.76487 -16.46774 -16.39737 -15.44795 -15.30044 -15.02063 -14.53212 -14.33320 -14.04303 -13.82063 -13.64862 -13.29461 -13.08459 -12.86603 -12.81570 -12.50113 -12.38309 -12.19006 -11.78913 -11.62692 -11.48671 -11.36363 -11.18603 -11.00409 -10.79135 -10.51932 -10.22262 -10.16054 -10.06310 -9.87040 -9.79832 -9.52901 -9.36717 -9.03176 -8.71827 -8.54244 -7.13630 -6.04502 -4.03958 2.66731 2.84268 3.30562 3.37983 3.41428 3.59561 4.13097 4.28187 4.39834 4.43900 4.63166 4.69760 4.91122 4.96094 5.05176 5.11770 5.25873 5.29278 5.34363 5.43768 5.49125 5.62748 5.66467 5.71092 5.75447 5.80041 5.88888 5.92290 6.02673 6.06018 6.09613 6.34165 6.38114 6.46842 6.56368 6.62005 6.74381 6.77894 6.88553 7.02364 7.11433 7.13217 7.21827 7.63884 8.19695 8.30437 8.32079 8.52455 9.01242 9.58559 11.08795 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.018169 B = 0.004554 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.679463 B = 6146.647984 C = 6915.621084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.157 3.843 10 N -0.523 5.523 11 C 0.071 3.929 12 C -0.106 4.106 13 C -0.082 4.082 14 C -0.078 4.078 15 C -0.127 4.127 16 C 0.102 3.898 17 N -0.626 5.626 18 C 0.093 3.907 19 C 0.021 3.979 20 O -0.377 6.377 21 C 0.028 3.972 22 C 0.531 3.469 23 O -0.496 6.496 24 C -0.085 4.085 25 C 0.054 3.946 26 H 0.262 0.738 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.042 0.958 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.700 -17.770 -3.818 22.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.587 4.587 8 H 0.092 0.908 9 C 0.030 3.970 10 N -0.246 5.246 11 C -0.059 4.059 12 C -0.145 4.145 13 C -0.120 4.120 14 C -0.082 4.082 15 C -0.165 4.165 16 C -0.021 4.021 17 N -0.363 5.363 18 C -0.011 4.011 19 C -0.056 4.056 20 O -0.295 6.295 21 C -0.051 4.051 22 C 0.320 3.680 23 O -0.369 6.369 24 C -0.123 4.123 25 C -0.075 4.075 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.060 0.940 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.257 -17.627 -3.307 22.302 hybrid contribution -0.487 0.875 -0.242 1.030 sum 12.770 -16.752 -3.548 21.361 Atomic orbital electron populations 1.69941 1.06373 1.26831 1.50649 1.24998 0.94674 0.99149 0.94350 0.86807 0.80348 0.83717 0.78573 1.20246 1.21426 1.18920 1.21782 0.90676 0.94735 1.51483 0.90773 1.20297 0.94565 0.85650 0.96463 1.61687 1.58471 1.03150 1.01291 1.21602 0.95980 0.95495 0.92778 1.21983 0.96789 0.98951 0.96747 1.20879 0.97914 0.99744 0.93459 1.20865 0.93227 0.95212 0.98879 1.22925 0.96904 0.95370 1.01308 1.22091 0.84464 1.00089 0.95441 1.48645 1.20604 1.18964 1.48091 1.24515 0.87299 0.90879 0.98367 1.24705 0.92699 0.95791 0.92415 1.89725 1.25793 1.58076 1.55911 1.24429 0.81897 1.01714 0.97013 1.20755 0.88191 0.80714 0.78370 1.90684 1.36233 1.73080 1.36919 1.20581 1.01458 0.95220 0.95041 1.20664 0.96007 0.95645 0.95157 0.92796 0.95734 0.95748 0.92525 0.93093 0.92079 0.93531 0.93663 0.89935 0.88960 0.90108 0.90743 0.91232 0.86486 0.87121 0.89220 0.89220 0.89449 0.92449 0.90657 0.94019 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.72 27.37 -169.99 -4.65 17.07 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.25 6.70 56.52 0.38 -5.88 16 7 C -0.55 -15.59 8.42 -34.44 -0.29 -15.88 16 8 H 0.07 2.34 6.90 -52.49 -0.36 1.98 16 9 C 0.16 3.81 3.83 -4.97 -0.02 3.79 16 10 N -0.52 -10.86 3.88 -241.34 -0.94 -11.80 16 11 C 0.07 1.48 4.16 -4.78 -0.02 1.46 16 12 C -0.11 -1.79 5.30 -25.60 -0.14 -1.92 16 13 C -0.08 -1.13 4.51 -27.68 -0.12 -1.25 16 14 C -0.08 -0.99 0.51 -155.66 -0.08 -1.07 16 15 C -0.13 -1.06 6.11 -24.95 -0.15 -1.21 16 16 C 0.10 0.80 7.12 -3.06 -0.02 0.78 16 17 N -0.63 -6.99 3.17 -172.52 -0.55 -7.54 16 18 C 0.09 0.99 4.88 -66.84 -0.33 0.66 16 19 C 0.02 0.28 8.59 37.64 0.32 0.61 16 20 O -0.38 -5.49 12.46 -35.23 -0.44 -5.93 16 21 C 0.03 0.32 8.70 37.65 0.33 0.65 16 22 C 0.53 7.67 5.40 -11.06 -0.06 7.61 16 23 O -0.50 -9.05 9.11 5.61 0.05 -9.00 16 24 C -0.08 -1.18 4.00 -29.50 -0.12 -1.30 16 25 C 0.05 1.02 4.02 -7.00 -0.03 0.99 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 27 H 0.02 0.60 7.36 -51.93 -0.38 0.21 16 28 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 29 H 0.06 1.28 7.62 -51.79 -0.39 0.88 16 30 H 0.05 1.22 5.17 -51.99 -0.27 0.95 16 31 H 0.06 1.07 6.36 -52.04 -0.33 0.74 16 32 H 0.05 0.73 8.19 -51.62 -0.42 0.31 16 33 H 0.04 0.52 7.41 -51.66 -0.38 0.14 16 34 H 0.08 1.18 7.30 -51.71 -0.38 0.81 16 35 H 0.09 0.62 7.83 -52.03 -0.41 0.22 16 36 H 0.08 0.60 7.48 -52.00 -0.39 0.22 16 37 H 0.07 0.42 8.14 -51.95 -0.42 0.00 16 38 H 0.07 0.49 8.14 -51.94 -0.42 0.06 16 39 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.11 1.85 5.70 -51.93 -0.30 1.56 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 1.18 7.24 -51.93 -0.38 0.80 16 44 H 0.06 0.71 7.95 -51.79 -0.41 0.30 16 45 H 0.07 0.97 8.04 -51.80 -0.42 0.56 16 46 H 0.04 0.91 5.65 -51.90 -0.29 0.61 16 47 H 0.06 1.29 7.50 -51.72 -0.39 0.90 16 LS Contribution 341.78 15.07 5.15 5.15 Total: -1.00 -33.14 341.78 -8.97 -42.11 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.54 Total: 1.32 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.82 Total: -4.12 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.71 Total: -46.60 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.39 Total: -14.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.65 Total: 17.07 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.14 -8.97 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.991 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds