Wall clock time and date at job start Tue Mar 31 2020 10:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00046 * 2 1 4 4 H 1.48501 * 109.47352 * 90.00151 * 3 2 1 5 5 H 1.48500 * 109.47091 * 330.00276 * 3 2 1 6 6 H 1.48501 * 109.47314 * 210.00468 * 3 2 1 7 7 C 1.37882 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99639 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00111 * 179.97438 * 7 2 1 10 10 N 1.46916 * 109.47374 * 174.68856 * 9 7 2 11 11 C 1.44109 * 110.98996 * 302.51496 * 10 9 7 12 12 C 1.54026 * 111.98681 * 210.17340 * 11 10 9 13 13 C 1.54135 * 112.82892 * 341.74673 * 12 11 10 14 14 C 1.49891 * 114.93036 * 298.30218 * 13 12 11 15 15 C 1.54825 * 110.36855 * 209.22142 * 14 13 12 16 16 C 1.54556 * 101.26201 * 149.48256 * 15 14 13 17 17 N 1.46811 * 105.14447 * 332.77447 * 16 15 14 18 18 C 1.46500 * 124.53622 * 198.02280 * 17 16 15 19 19 C 1.54039 * 113.81660 * 218.57053 * 18 17 16 20 20 O 1.44448 * 85.42355 * 223.24091 * 19 18 17 21 21 C 1.44175 * 93.38391 * 24.08995 * 20 19 18 22 22 C 1.34912 * 111.13386 * 18.05907 * 17 16 15 23 23 O 1.21225 * 123.84312 * 179.46851 * 22 17 16 24 24 C 1.54366 * 110.03718 * 90.03620 * 14 13 12 25 25 C 1.45613 * 112.27105 * 296.08566 * 24 14 13 26 26 H 0.97002 * 120.00128 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47238 * 294.68980 * 9 7 2 28 28 H 1.09001 * 109.47212 * 54.68810 * 9 7 2 29 29 H 1.09246 * 108.75082 * 330.45903 * 11 10 9 30 30 H 1.08892 * 109.33780 * 88.86337 * 11 10 9 31 31 H 1.08801 * 109.46924 * 219.27033 * 12 11 10 32 32 H 1.09537 * 108.25571 * 101.84511 * 12 11 10 33 33 H 1.09469 * 108.45691 * 176.74800 * 13 12 11 34 34 H 1.09383 * 108.63577 * 60.09822 * 13 12 11 35 35 H 1.08824 * 110.73129 * 267.54269 * 15 14 13 36 36 H 1.08866 * 110.72548 * 31.55259 * 15 14 13 37 37 H 1.08954 * 110.34050 * 213.80214 * 16 15 14 38 38 H 1.08977 * 110.27648 * 91.64927 * 16 15 14 39 39 H 1.08998 * 112.99930 * 350.40049 * 18 17 16 40 40 H 1.09000 * 113.86210 * 337.34238 * 19 18 17 41 41 H 1.08991 * 113.86367 * 109.05166 * 19 18 17 42 42 H 1.09001 * 113.86451 * 221.76948 * 21 20 19 43 43 H 1.08991 * 113.86756 * 90.05849 * 21 20 19 44 44 H 1.09243 * 108.93459 * 175.18023 * 24 14 13 45 45 H 1.09234 * 108.92355 * 57.07911 * 24 14 13 46 46 H 1.09048 * 108.96711 * 300.16618 * 25 24 14 47 47 H 1.09362 * 108.52675 * 182.83238 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4466 2.6526 -0.7000 6 1 3.5467 1.4402 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0013 -2.5733 0.1266 11 6 3.4921 -3.1932 1.3237 12 6 4.4674 -4.2424 1.8896 13 6 5.5096 -4.7097 0.8545 14 6 4.9388 -5.3819 -0.3576 15 6 5.9460 -6.4100 -0.9281 16 6 4.9914 -7.4603 -1.5399 17 7 3.7554 -7.3590 -0.7541 18 6 2.7134 -8.3878 -0.7086 19 6 1.2811 -7.8216 -0.6800 20 8 1.0297 -8.8224 0.3308 21 6 2.4179 -8.9114 0.7096 22 6 3.7029 -6.1925 -0.0783 23 8 2.7787 -5.8667 0.6353 24 6 4.6487 -4.3359 -1.4551 25 6 3.6279 -3.3797 -1.0502 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.7646 -0.9349 28 1 3.8752 -0.6003 0.8375 29 1 3.3301 -2.4197 2.0781 30 1 2.5377 -3.6697 1.1050 31 1 3.9058 -5.0987 2.2571 32 1 4.9965 -3.7963 2.7386 33 1 6.1975 -5.4056 1.3452 34 1 6.0925 -3.8430 0.5296 35 1 6.5716 -5.9531 -1.6925 36 1 6.5474 -6.8435 -0.1308 37 1 5.4178 -8.4587 -1.4479 38 1 4.7942 -7.2275 -2.5860 39 1 2.8605 -9.1759 -1.4470 40 1 1.2190 -6.7976 -0.3117 41 1 0.7265 -7.9782 -1.6051 42 1 2.7629 -9.9306 0.8842 43 1 2.7037 -8.2210 1.5030 44 1 4.3154 -4.8527 -2.3580 45 1 5.5715 -3.7987 -1.6853 46 1 2.7045 -3.9176 -0.8332 47 1 3.4350 -2.7022 -1.8867 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:45 Heat of formation + Delta-G solvation = -47.530498 kcal Electronic energy + Delta-G solvation = -27951.488081 eV Core-core repulsion = 24327.996035 eV Total energy + Delta-G solvation = -3623.492046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.55603 -40.96412 -38.98722 -37.54250 -35.67246 -34.34666 -33.35340 -31.63301 -29.76432 -28.65883 -27.61735 -27.22971 -26.17183 -23.97715 -23.55346 -22.68504 -21.59261 -20.68258 -19.30225 -18.89072 -18.06101 -17.47907 -17.39721 -16.92127 -16.55555 -16.34941 -16.08726 -15.57211 -15.51828 -15.01357 -14.86394 -14.58063 -14.47550 -14.20630 -13.98274 -13.87132 -13.73715 -13.33224 -13.18881 -13.04931 -12.80072 -12.57123 -12.50349 -12.22598 -12.05552 -11.99080 -11.92612 -11.79145 -11.67513 -11.38996 -11.28111 -10.93954 -10.93313 -10.81864 -10.12705 -9.62040 -9.00196 -8.34070 -6.40455 1.33232 1.35021 1.47757 1.61197 1.99688 2.31815 2.65245 3.01012 3.19728 3.28746 3.42964 3.65258 3.77741 3.87835 4.03215 4.09762 4.17753 4.36971 4.41151 4.41723 4.44196 4.46768 4.56223 4.65398 4.67536 4.75471 4.78685 4.88036 4.94314 4.97619 4.99591 5.05245 5.12676 5.13382 5.20924 5.28035 5.30682 5.34571 5.35537 5.38460 5.52257 5.57861 5.74085 6.12413 6.18836 6.38330 6.49978 6.68244 7.27026 7.30027 8.83393 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.018169 B = 0.004554 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.679463 B = 6146.647984 C = 6915.621084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.239 1.239 7 C -0.551 4.551 8 H 0.019 0.981 9 C 0.162 3.838 10 N -0.505 5.505 11 C 0.082 3.918 12 C -0.098 4.098 13 C -0.080 4.080 14 C -0.084 4.084 15 C -0.112 4.112 16 C 0.097 3.903 17 N -0.622 5.622 18 C 0.111 3.889 19 C 0.008 3.992 20 O -0.403 6.403 21 C 0.025 3.975 22 C 0.516 3.484 23 O -0.550 6.550 24 C -0.082 4.082 25 C 0.064 3.936 26 H 0.266 0.734 27 H 0.036 0.964 28 H 0.029 0.971 29 H 0.028 0.972 30 H 0.005 0.995 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.163 0.837 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.126 0.874 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.100 0.900 46 H -0.001 1.001 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.486 -19.141 -5.537 27.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.192 4.192 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.162 1.162 7 C -0.590 4.590 8 H 0.037 0.963 9 C 0.034 3.966 10 N -0.227 5.227 11 C -0.048 4.048 12 C -0.137 4.137 13 C -0.118 4.118 14 C -0.087 4.087 15 C -0.149 4.149 16 C -0.025 4.025 17 N -0.357 5.357 18 C 0.007 3.993 19 C -0.070 4.070 20 O -0.321 6.321 21 C -0.053 4.053 22 C 0.305 3.695 23 O -0.427 6.427 24 C -0.120 4.120 25 C -0.064 4.064 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.023 0.977 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.180 0.820 40 H 0.083 0.917 41 H 0.126 0.874 42 H 0.144 0.856 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.118 0.882 46 H 0.018 0.982 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.094 -19.048 -5.055 26.753 hybrid contribution -2.156 1.220 0.332 2.499 sum 15.938 -17.827 -4.723 24.375 Atomic orbital electron populations 1.70121 1.08657 1.28207 1.52284 1.26071 0.95598 1.03866 0.93682 0.85561 0.79608 0.77599 0.79250 1.19297 1.20863 1.16204 1.21956 0.93090 0.92775 1.51145 0.96287 1.20214 0.91357 0.88131 0.96900 1.61876 1.56997 1.01952 1.01881 1.21488 0.95722 0.95394 0.92186 1.21850 0.96624 0.97005 0.98176 1.20898 0.96921 1.00744 0.93225 1.20907 0.93967 0.95754 0.98075 1.22964 0.95977 0.93639 1.02336 1.22456 0.82518 1.02016 0.95462 1.48740 1.21783 1.17828 1.47375 1.24485 0.85206 0.90992 0.98570 1.24630 0.96182 0.93587 0.92554 1.89689 1.27993 1.57943 1.56524 1.24533 0.80576 1.03134 0.97042 1.21263 0.88176 0.81900 0.78127 1.90686 1.38210 1.74382 1.39393 1.20533 1.00479 0.94692 0.96286 1.20697 0.96559 0.95686 0.93424 0.92547 0.94634 0.95273 0.95363 0.97668 0.93375 0.92256 0.90311 0.89751 0.86249 0.88341 0.87223 0.89716 0.82003 0.91701 0.87441 0.85573 0.92352 0.90443 0.88175 0.98244 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.53 13.96 21.45 0.30 -62.23 16 2 C 0.01 0.31 5.47 84.66 0.46 0.78 16 3 Si 0.96 45.36 27.37 68.60 1.88 47.24 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.24 -10.28 6.70 99.48 0.67 -9.61 16 7 C -0.55 -33.37 8.42 25.60 0.22 -33.15 16 8 H 0.02 1.32 6.90 -2.91 -0.02 1.30 16 9 C 0.16 8.01 3.83 85.55 0.33 8.33 16 10 N -0.50 -21.62 3.88 -917.45 -3.56 -25.18 16 11 C 0.08 3.68 4.16 87.17 0.36 4.04 16 12 C -0.10 -3.38 5.30 31.33 0.17 -3.21 16 13 C -0.08 -2.01 4.51 29.98 0.14 -1.87 16 14 C -0.08 -1.92 0.51 -52.93 -0.03 -1.94 16 15 C -0.11 -1.23 6.11 31.75 0.19 -1.04 16 16 C 0.10 0.99 7.12 86.85 0.62 1.61 16 17 N -0.62 -12.50 3.17 -829.12 -2.63 -15.13 16 18 C 0.11 2.15 4.88 45.70 0.22 2.38 16 19 C 0.01 0.22 8.59 72.30 0.62 0.84 16 20 O -0.40 -12.13 12.46 -148.98 -1.86 -13.98 16 21 C 0.02 0.56 8.70 72.30 0.63 1.19 16 22 C 0.52 14.93 5.40 87.55 0.47 15.40 16 23 O -0.55 -21.96 9.11 -2.86 -0.03 -21.98 16 24 C -0.08 -2.14 4.00 28.80 0.12 -2.02 16 25 C 0.06 2.56 4.02 83.94 0.34 2.90 16 26 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 27 H 0.04 1.70 7.36 -2.39 -0.02 1.68 16 28 H 0.03 1.42 7.20 -2.39 -0.02 1.41 16 29 H 0.03 1.37 7.62 -2.26 -0.02 1.35 16 30 H 0.00 0.27 5.17 -2.44 -0.01 0.26 16 31 H 0.05 1.78 6.36 -2.49 -0.02 1.77 16 32 H 0.06 1.85 8.19 -2.10 -0.02 1.84 16 33 H 0.08 1.49 7.41 -2.14 -0.02 1.48 16 34 H 0.08 2.13 7.30 -2.18 -0.02 2.12 16 35 H 0.12 0.77 7.83 -2.48 -0.02 0.75 16 36 H 0.10 0.83 7.48 -2.46 -0.02 0.81 16 37 H 0.11 0.47 8.14 -2.41 -0.02 0.45 16 38 H 0.08 0.69 8.14 -2.40 -0.02 0.67 16 39 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 2.46 5.70 -2.39 -0.01 2.45 16 41 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.06 1.66 7.24 -2.39 -0.02 1.65 16 44 H 0.08 1.73 7.95 -2.26 -0.02 1.71 16 45 H 0.10 2.19 8.04 -2.26 -0.02 2.17 16 46 H 0.00 -0.04 5.65 -2.36 -0.01 -0.06 16 47 H 0.04 1.87 7.50 -2.19 -0.02 1.85 16 Total: -1.00 -83.33 341.78 -0.11 -83.44 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.93 Total: 13.60 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 4.85 Total: -5.77 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -5.89 Total: -102.55 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -1.88 Total: -35.97 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -83.33 -0.11 -83.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.913 kcal (2) G-P(sol) polarization free energy of solvation -83.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds