Wall clock time and date at job start Tue Mar 31 2020 09:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47084 * 2 1 4 4 C 1.46900 * 111.00253 * 287.90295 * 3 2 1 5 5 C 1.52990 * 109.47107 * 160.31769 * 4 3 2 6 6 C 1.50709 * 109.47034 * 185.00394 * 5 4 3 7 7 H 1.07996 * 119.99617 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99789 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99710 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00490 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46882 * 89.99911 * 10 8 6 12 12 H 1.48502 * 109.47059 * 210.00273 * 10 8 6 13 13 H 1.48497 * 109.46963 * 330.00193 * 10 8 6 14 14 C 1.46906 * 110.99841 * 163.94957 * 3 2 1 15 15 C 1.50698 * 109.47409 * 293.95572 * 14 3 2 16 16 N 1.28669 * 124.93002 * 90.02136 * 15 14 3 17 17 C 1.32522 * 117.87628 * 180.02562 * 16 15 14 18 18 C 1.34618 * 113.15640 * 359.97438 * 17 16 15 19 19 S 1.70910 * 124.92737 * 269.72110 * 15 14 3 20 20 C 1.50995 * 125.22126 * 180.02562 * 18 17 16 21 21 C 1.53274 * 108.58127 * 16.08396 * 20 18 17 22 22 H 1.08998 * 109.54974 * 70.56858 * 21 20 18 23 23 C 1.53000 * 109.55407 * 190.76438 * 21 20 18 24 24 C 1.53150 * 108.99513 * 310.71783 * 21 20 18 25 25 C 1.52127 * 124.19923 * 179.97438 * 17 16 15 26 26 H 1.09002 * 109.47017 * 179.03378 * 1 2 3 27 27 H 1.09000 * 109.46691 * 299.02787 * 1 2 3 28 28 H 1.08997 * 109.47031 * 59.02968 * 1 2 3 29 29 H 1.08997 * 109.47161 * 239.99454 * 2 1 3 30 30 H 1.09006 * 109.47124 * 119.99960 * 2 1 3 31 31 H 1.08998 * 109.47380 * 280.32165 * 4 3 2 32 32 H 1.08998 * 109.46561 * 40.31730 * 4 3 2 33 33 H 1.09005 * 109.47444 * 304.99724 * 5 4 3 34 34 H 1.09000 * 109.47671 * 65.00479 * 5 4 3 35 35 H 0.97005 * 119.99996 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.46675 * 53.95389 * 14 3 2 37 37 H 1.08998 * 109.47137 * 173.95184 * 14 3 2 38 38 H 1.08997 * 109.61865 * 135.81357 * 20 18 17 39 39 H 1.09004 * 109.62318 * 256.17323 * 20 18 17 40 40 H 1.08999 * 109.47138 * 59.99996 * 23 21 20 41 41 H 1.08999 * 109.47457 * 180.02562 * 23 21 20 42 42 H 1.09002 * 109.47149 * 300.00051 * 23 21 20 43 43 H 1.09001 * 109.47521 * 190.37817 * 24 21 20 44 44 H 1.09003 * 109.46819 * 310.37819 * 24 21 20 45 45 H 1.09003 * 109.59209 * 317.28884 * 25 17 16 46 46 H 1.09004 * 109.59816 * 77.73888 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7977 2.0219 -1.3050 5 6 1.8485 3.5426 -1.1455 6 6 1.4997 4.1972 -2.4574 7 1 1.2656 3.5893 -3.3188 8 6 1.4804 5.5721 -2.5581 9 7 1.1755 6.1434 -3.7028 10 14 1.8859 6.6237 -1.0683 11 1 3.3456 6.8947 -1.0363 12 1 1.1456 7.9082 -1.1528 13 1 1.4888 5.9039 0.1684 14 6 3.4378 1.4420 0.3792 15 6 3.5921 1.0071 1.8138 16 7 3.7926 -0.2041 2.1990 17 6 3.9074 -0.4296 3.4998 18 6 3.7925 0.6870 4.2429 19 16 3.5335 2.0523 3.1648 20 6 3.8800 0.7435 5.7492 21 6 4.5089 -0.5610 6.2512 22 1 5.5650 -0.5837 5.9825 23 6 4.3655 -0.6466 7.7721 24 6 3.7886 -1.7448 5.5991 25 6 4.1451 -1.8018 4.1121 26 1 -0.3633 -1.0275 -0.0173 27 1 -0.3633 0.4987 0.8986 28 1 -0.3633 0.5288 -0.8811 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 2.5734 1.7035 -2.0014 32 1 0.8210 1.7294 -1.6905 33 1 1.1331 3.8522 -0.3835 34 1 2.8522 3.8432 -0.8451 35 1 1.1616 7.1108 -3.7736 36 1 4.0132 0.7777 -0.2657 37 1 3.8030 2.4629 0.2677 38 1 4.5008 1.5880 6.0483 39 1 2.8808 0.8569 6.1700 40 1 3.3089 -0.6272 8.0391 41 1 4.8136 -1.5744 8.1277 42 1 4.8724 0.2012 8.2331 43 1 4.0995 -2.6707 6.0831 44 1 2.7114 -1.6207 5.7103 45 1 3.5152 -2.5386 3.6135 46 1 5.1937 -2.0767 3.9974 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308162138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:04 Heat of formation + Delta-G solvation = 20.413808 kcal Electronic energy + Delta-G solvation = -23203.927309 eV Core-core repulsion = 20026.134420 eV Total energy + Delta-G solvation = -3177.792889 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29143 -38.02042 -36.81525 -33.13040 -32.01377 -31.20159 -30.95371 -29.77926 -27.41707 -25.42551 -24.35697 -23.96921 -22.33697 -21.20824 -20.79488 -19.82515 -18.51637 -17.91788 -16.80719 -15.75389 -15.34761 -15.18945 -14.86032 -14.46030 -14.33970 -14.14532 -13.78288 -13.60992 -13.44864 -13.28149 -12.79086 -12.66082 -12.61328 -12.36651 -12.16157 -11.81819 -11.71442 -11.61743 -11.37915 -11.26824 -11.14660 -11.00514 -10.90537 -10.67880 -10.53452 -9.92418 -9.88914 -9.73681 -9.43328 -9.20837 -9.10114 -8.53622 -8.51122 -7.91627 -6.03496 -4.01670 0.76567 1.42509 1.89333 2.76920 3.32434 3.40324 3.46332 3.93230 4.39531 4.41084 4.46036 4.47190 4.50763 4.84803 4.92428 5.14722 5.19916 5.24459 5.30284 5.31667 5.34911 5.37785 5.40737 5.49109 5.57125 5.61162 5.69247 5.73875 5.75672 5.81724 5.85376 5.98403 6.03406 6.04396 6.11667 6.22982 6.32181 6.38487 6.48248 6.79490 7.14965 7.22099 7.54728 7.62669 7.82820 7.85208 8.53591 9.00664 9.59090 11.09832 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020287 B = 0.003383 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.886352 B = 8275.045891 C = 9224.261015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 N -0.536 5.536 4 C 0.069 3.931 5 C -0.006 4.006 6 C -0.520 4.520 7 H 0.071 0.929 8 C 0.068 3.932 9 N -0.904 5.904 10 Si 0.877 3.123 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.126 3.874 15 C 0.074 3.926 16 N -0.477 5.477 17 C 0.065 3.935 18 C -0.241 4.241 19 S 0.142 5.858 20 C -0.033 4.033 21 C -0.088 4.088 22 H 0.075 0.925 23 C -0.146 4.146 24 C -0.114 4.114 25 C -0.037 4.037 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.008 0.992 35 H 0.263 0.737 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.579 -15.466 21.678 27.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 N -0.262 5.262 4 C -0.057 4.057 5 C -0.044 4.044 6 C -0.559 4.559 7 H 0.089 0.911 8 C -0.133 4.133 9 N -0.543 5.543 10 Si 0.704 3.296 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.186 1.186 14 C -0.005 4.005 15 C -0.205 4.205 16 N -0.192 5.192 17 C -0.067 4.067 18 C -0.363 4.363 19 S 0.400 5.600 20 C -0.073 4.073 21 C -0.108 4.108 22 H 0.093 0.907 23 C -0.204 4.204 24 C -0.152 4.152 25 C -0.077 4.077 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.026 0.974 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.162 -14.305 21.593 26.624 hybrid contribution 0.760 -0.477 0.217 0.923 sum 6.922 -14.782 21.809 27.241 Atomic orbital electron populations 1.21762 0.95125 1.00614 1.02745 1.22134 0.95941 0.89237 1.00873 1.62145 1.14492 1.16937 1.32579 1.22229 1.00571 0.96968 0.85941 1.19559 0.96416 0.90486 0.97925 1.21070 1.47055 0.91888 0.95872 0.91104 1.24988 0.94617 0.97991 0.95725 1.69915 1.49305 1.10333 1.24729 0.86808 0.78630 0.79861 0.84284 1.20339 1.21414 1.18614 1.20685 0.91405 1.01980 0.86390 1.26709 1.01771 0.90884 1.01104 1.65873 1.16344 1.20638 1.16343 1.20798 1.02643 0.96335 0.86944 1.26020 1.13366 0.95865 1.01023 1.84071 1.65951 1.11778 0.98195 1.20178 1.01650 0.98357 0.87092 1.21195 1.00203 0.94107 0.95282 0.90686 1.21821 1.02047 1.01906 0.94601 1.21639 1.00981 0.98259 0.94284 1.20307 1.02208 0.90847 0.94318 0.93040 0.92374 0.92107 0.95152 0.90573 0.95156 0.90667 0.95530 0.97421 0.92746 0.92009 0.88148 0.90578 0.90238 0.92450 0.92355 0.92488 0.90904 0.91437 0.90040 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.99 37.16 0.37 -1.75 16 2 C 0.05 0.73 5.55 -3.82 -0.02 0.71 16 3 N -0.54 -9.46 4.38 -236.07 -1.03 -10.50 16 4 C 0.07 1.39 4.77 -3.83 -0.02 1.38 16 5 C -0.01 -0.14 4.08 -27.88 -0.11 -0.26 16 6 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 7 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 10 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 14 C 0.13 2.06 5.37 -4.97 -0.03 2.04 16 15 C 0.07 1.14 6.09 -13.60 -0.08 1.06 16 16 N -0.48 -7.22 9.33 -7.33 -0.07 -7.28 16 17 C 0.06 0.84 6.78 -82.87 -0.56 0.28 16 18 C -0.24 -2.93 6.39 -35.45 -0.23 -3.15 16 19 S 0.14 1.97 23.17 -107.50 -2.49 -0.52 16 20 C -0.03 -0.29 5.58 -27.60 -0.15 -0.45 16 21 C -0.09 -0.64 2.73 -90.40 -0.25 -0.88 16 22 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 23 C -0.15 -0.82 9.18 37.16 0.34 -0.48 16 24 C -0.11 -0.84 5.18 -26.64 -0.14 -0.98 16 25 C -0.04 -0.35 6.29 -27.16 -0.17 -0.52 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.94 6.52 -51.93 -0.34 0.60 16 29 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 30 H 0.08 1.21 6.03 -51.93 -0.31 0.90 16 31 H 0.03 0.60 8.00 -51.93 -0.42 0.19 16 32 H 0.07 1.53 6.24 -51.93 -0.32 1.20 16 33 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 34 H 0.01 0.18 6.38 -51.93 -0.33 -0.15 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 36 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 37 H 0.10 1.67 6.71 -51.93 -0.35 1.32 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 44 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 369.30 15.07 5.57 5.57 Total: -1.00 -31.07 369.30 -11.34 -42.41 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -7.94 Total: -3.41 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -1.48 Total: -16.23 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.33 Total: -44.93 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.49 Total: -0.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.07 -11.34 -42.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308162138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.822 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds