Wall clock time and date at job start Tue Mar 31 2020 09:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47084 * 2 1 4 4 C 1.46900 * 111.00253 * 287.90295 * 3 2 1 5 5 C 1.52990 * 109.47107 * 160.31769 * 4 3 2 6 6 C 1.50709 * 109.47034 * 185.00394 * 5 4 3 7 7 H 1.07996 * 119.99617 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99789 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99710 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00490 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46882 * 89.99911 * 10 8 6 12 12 H 1.48502 * 109.47059 * 210.00273 * 10 8 6 13 13 H 1.48497 * 109.46963 * 330.00193 * 10 8 6 14 14 C 1.46906 * 110.99841 * 163.94957 * 3 2 1 15 15 C 1.50698 * 109.47409 * 293.95572 * 14 3 2 16 16 N 1.28669 * 124.93002 * 90.02136 * 15 14 3 17 17 C 1.32522 * 117.87628 * 180.02562 * 16 15 14 18 18 C 1.34618 * 113.15640 * 359.97438 * 17 16 15 19 19 S 1.70910 * 124.92737 * 269.72110 * 15 14 3 20 20 C 1.50995 * 125.22126 * 180.02562 * 18 17 16 21 21 C 1.53274 * 108.58127 * 16.08396 * 20 18 17 22 22 H 1.08998 * 109.54974 * 70.56858 * 21 20 18 23 23 C 1.53000 * 109.55407 * 190.76438 * 21 20 18 24 24 C 1.53150 * 108.99513 * 310.71783 * 21 20 18 25 25 C 1.52127 * 124.19923 * 179.97438 * 17 16 15 26 26 H 1.09002 * 109.47017 * 179.03378 * 1 2 3 27 27 H 1.09000 * 109.46691 * 299.02787 * 1 2 3 28 28 H 1.08997 * 109.47031 * 59.02968 * 1 2 3 29 29 H 1.08997 * 109.47161 * 239.99454 * 2 1 3 30 30 H 1.09006 * 109.47124 * 119.99960 * 2 1 3 31 31 H 1.08998 * 109.47380 * 280.32165 * 4 3 2 32 32 H 1.08998 * 109.46561 * 40.31730 * 4 3 2 33 33 H 1.09005 * 109.47444 * 304.99724 * 5 4 3 34 34 H 1.09000 * 109.47671 * 65.00479 * 5 4 3 35 35 H 0.97005 * 119.99996 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.46675 * 53.95389 * 14 3 2 37 37 H 1.08998 * 109.47137 * 173.95184 * 14 3 2 38 38 H 1.08997 * 109.61865 * 135.81357 * 20 18 17 39 39 H 1.09004 * 109.62318 * 256.17323 * 20 18 17 40 40 H 1.08999 * 109.47138 * 59.99996 * 23 21 20 41 41 H 1.08999 * 109.47457 * 180.02562 * 23 21 20 42 42 H 1.09002 * 109.47149 * 300.00051 * 23 21 20 43 43 H 1.09001 * 109.47521 * 190.37817 * 24 21 20 44 44 H 1.09003 * 109.46819 * 310.37819 * 24 21 20 45 45 H 1.09003 * 109.59209 * 317.28884 * 25 17 16 46 46 H 1.09004 * 109.59816 * 77.73888 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7977 2.0219 -1.3050 5 6 1.8485 3.5426 -1.1455 6 6 1.4997 4.1972 -2.4574 7 1 1.2656 3.5893 -3.3188 8 6 1.4804 5.5721 -2.5581 9 7 1.1755 6.1434 -3.7028 10 14 1.8859 6.6237 -1.0683 11 1 3.3456 6.8947 -1.0363 12 1 1.1456 7.9082 -1.1528 13 1 1.4888 5.9039 0.1684 14 6 3.4378 1.4420 0.3792 15 6 3.5921 1.0071 1.8138 16 7 3.7926 -0.2041 2.1990 17 6 3.9074 -0.4296 3.4998 18 6 3.7925 0.6870 4.2429 19 16 3.5335 2.0523 3.1648 20 6 3.8800 0.7435 5.7492 21 6 4.5089 -0.5610 6.2512 22 1 5.5650 -0.5837 5.9825 23 6 4.3655 -0.6466 7.7721 24 6 3.7886 -1.7448 5.5991 25 6 4.1451 -1.8018 4.1121 26 1 -0.3633 -1.0275 -0.0173 27 1 -0.3633 0.4987 0.8986 28 1 -0.3633 0.5288 -0.8811 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 2.5734 1.7035 -2.0014 32 1 0.8210 1.7294 -1.6905 33 1 1.1331 3.8522 -0.3835 34 1 2.8522 3.8432 -0.8451 35 1 1.1616 7.1108 -3.7736 36 1 4.0132 0.7777 -0.2657 37 1 3.8030 2.4629 0.2677 38 1 4.5008 1.5880 6.0483 39 1 2.8808 0.8569 6.1700 40 1 3.3089 -0.6272 8.0391 41 1 4.8136 -1.5744 8.1277 42 1 4.8724 0.2012 8.2331 43 1 4.0995 -2.6707 6.0831 44 1 2.7114 -1.6207 5.7103 45 1 3.5152 -2.5386 3.6135 46 1 5.1937 -2.0767 3.9974 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308162138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:03 Heat of formation + Delta-G solvation = 2.734557 kcal Electronic energy + Delta-G solvation = -23204.693939 eV Core-core repulsion = 20026.134420 eV Total energy + Delta-G solvation = -3178.559519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.26061 -39.24423 -37.75904 -35.20647 -32.93342 -32.78671 -31.94711 -30.97479 -28.69696 -26.52303 -25.82203 -24.87537 -23.28811 -22.81867 -21.66853 -21.29669 -19.43247 -18.99864 -18.85139 -17.00381 -16.61227 -16.44278 -15.99613 -15.70012 -15.41438 -15.17901 -15.01608 -14.84546 -14.60685 -14.39260 -14.29371 -13.88016 -13.65838 -13.40498 -13.21255 -12.96930 -12.89541 -12.66623 -12.64123 -12.61166 -12.32287 -12.20654 -11.80368 -11.73887 -11.60534 -11.56372 -11.48380 -11.37162 -11.25837 -10.74764 -10.54652 -10.14828 -9.55218 -9.31669 -8.28814 -6.32651 -0.28657 0.39202 0.84818 1.36098 1.38815 1.51743 1.72479 2.37244 2.82815 3.06948 3.14844 3.74581 3.77916 3.86168 3.94385 4.07652 4.11192 4.17400 4.31142 4.41709 4.44729 4.53204 4.54870 4.60364 4.63091 4.68405 4.72965 4.76616 4.88665 4.90947 4.94439 4.96908 5.05133 5.08609 5.18301 5.21676 5.27479 5.35049 5.37995 5.41684 5.43873 5.52657 5.64343 6.04580 6.11578 6.29224 6.74767 6.78121 7.32066 8.87781 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020287 B = 0.003383 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.886352 B = 8275.045891 C = 9224.261015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.050 3.950 3 N -0.540 5.540 4 C 0.082 3.918 5 C 0.003 3.997 6 C -0.529 4.529 7 H 0.034 0.966 8 C 0.008 3.992 9 N -0.950 5.950 10 Si 0.945 3.055 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.247 1.247 14 C 0.129 3.871 15 C 0.051 3.949 16 N -0.488 5.488 17 C 0.044 3.956 18 C -0.227 4.227 19 S 0.132 5.868 20 C -0.036 4.036 21 C -0.083 4.083 22 H 0.073 0.927 23 C -0.142 4.142 24 C -0.109 4.109 25 C -0.036 4.036 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.022 0.978 34 H 0.016 0.984 35 H 0.266 0.734 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.295 -16.457 25.065 30.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 N -0.266 5.266 4 C -0.045 4.045 5 C -0.035 4.035 6 C -0.568 4.568 7 H 0.052 0.948 8 C -0.189 4.189 9 N -0.591 5.591 10 Si 0.769 3.231 11 H -0.190 1.190 12 H -0.209 1.209 13 H -0.171 1.171 14 C -0.002 4.002 15 C -0.227 4.227 16 N -0.204 5.204 17 C -0.087 4.087 18 C -0.348 4.348 19 S 0.389 5.611 20 C -0.076 4.076 21 C -0.104 4.104 22 H 0.092 0.908 23 C -0.200 4.200 24 C -0.147 4.147 25 C -0.075 4.075 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.884 -15.325 24.987 30.110 hybrid contribution 0.539 -0.253 -0.847 1.035 sum 7.423 -15.579 24.140 29.674 Atomic orbital electron populations 1.21733 0.94220 1.01966 1.01840 1.22140 0.96610 0.88030 1.00957 1.62065 1.15741 1.18129 1.30639 1.21905 1.00305 0.94928 0.87350 1.19410 0.96334 0.92655 0.95119 1.21385 1.46598 0.92078 0.96726 0.94766 1.25933 0.94492 0.99541 0.98939 1.70061 1.50893 1.10903 1.27235 0.85724 0.79009 0.77877 0.80527 1.18994 1.20949 1.17088 1.20596 0.90406 1.01692 0.87496 1.26431 1.03865 0.91550 1.00877 1.65869 1.16072 1.20641 1.17787 1.21360 1.02973 0.98078 0.86298 1.26464 1.11350 0.94608 1.02383 1.84018 1.66066 1.12653 0.98350 1.20390 1.02572 0.99880 0.84738 1.21187 0.99833 0.92907 0.96433 0.90813 1.21788 1.02430 1.02694 0.93049 1.21642 1.00796 0.99438 0.92791 1.20439 1.02675 0.88875 0.95552 0.90604 0.92853 0.93319 0.94951 0.90422 0.95434 0.91193 0.95987 0.96609 0.92486 0.91960 0.88821 0.89628 0.89381 0.92189 0.91293 0.92088 0.88680 0.91797 0.90156 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.99 71.98 0.72 -3.24 16 2 C 0.05 1.55 5.55 86.30 0.48 2.03 16 3 N -0.54 -18.92 4.38 -900.80 -3.95 -22.86 16 4 C 0.08 3.34 4.77 86.30 0.41 3.75 16 5 C 0.00 0.13 4.08 29.85 0.12 0.25 16 6 C -0.53 -30.77 9.66 25.60 0.25 -30.52 16 7 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 8 C 0.01 0.46 5.47 84.65 0.46 0.93 16 9 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 10 Si 0.95 44.82 27.47 68.60 1.88 46.71 16 11 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 13 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 14 C 0.13 4.18 5.37 85.56 0.46 4.64 16 15 C 0.05 1.54 6.09 88.57 0.54 2.08 16 16 N -0.49 -14.35 9.33 -177.09 -1.65 -16.00 16 17 C 0.04 1.07 6.78 42.08 0.29 1.36 16 18 C -0.23 -5.10 6.39 24.95 0.16 -4.94 16 19 S 0.13 3.51 23.17 -56.49 -1.31 2.21 16 20 C -0.04 -0.55 5.58 30.03 0.17 -0.38 16 21 C -0.08 -0.96 2.73 -10.65 -0.03 -0.99 16 22 H 0.07 0.90 8.11 -2.39 -0.02 0.88 16 23 C -0.14 -1.11 9.18 71.98 0.66 -0.45 16 24 C -0.11 -1.29 5.18 30.65 0.16 -1.13 16 25 C -0.04 -0.61 6.29 30.31 0.19 -0.42 16 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.49 6.52 -2.39 -0.02 1.47 16 29 H 0.03 0.98 8.05 -2.39 -0.02 0.96 16 30 H 0.08 2.41 6.03 -2.38 -0.01 2.39 16 31 H 0.03 1.12 8.00 -2.39 -0.02 1.10 16 32 H 0.07 2.89 6.24 -2.39 -0.01 2.88 16 33 H 0.02 1.07 7.20 -2.38 -0.02 1.05 16 34 H 0.02 0.73 6.38 -2.39 -0.02 0.71 16 35 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 36 H 0.06 1.97 8.12 -2.38 -0.02 1.95 16 37 H 0.09 3.10 6.71 -2.39 -0.02 3.09 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.24 8.12 -2.38 -0.02 1.22 16 40 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.09 0.74 8.11 -2.39 -0.02 0.72 16 44 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 45 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -67.48 369.30 1.20 -66.28 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.89 Total: 10.46 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 5.03 Total: -27.04 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -5.30 Total: -98.62 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.71 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.31 Total: 2.21 kcal Total: -67.48 1.20 -66.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308162138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.019 kcal (2) G-P(sol) polarization free energy of solvation -67.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds