Wall clock time and date at job start Tue Mar 31 2020 10:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00475 * 2 1 4 4 H 1.48492 * 109.47241 * 270.00079 * 3 2 1 5 5 H 1.48500 * 109.47020 * 30.00261 * 3 2 1 6 6 H 1.48505 * 109.47145 * 149.99849 * 3 2 1 7 7 C 1.37885 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00348 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99617 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47493 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47530 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00186 * 180.02562 * 12 11 10 14 14 O 1.21346 * 119.99992 * 359.97438 * 13 12 11 15 15 C 1.49450 * 119.99827 * 179.97438 * 13 12 11 16 16 O 1.21352 * 120.00258 * 353.79934 * 15 13 12 17 17 N 1.34601 * 119.99837 * 173.80539 * 15 13 12 18 18 C 1.47260 * 122.39647 * 352.16167 * 17 15 13 19 19 C 1.52577 * 108.56640 * 119.29881 * 18 17 15 20 20 C 1.51930 * 112.84001 * 51.31586 * 19 18 17 21 21 C 1.51930 * 113.92721 * 313.44712 * 20 19 18 22 22 C 1.47264 * 122.38932 * 172.11984 * 17 15 13 23 23 C 1.52607 * 108.55930 * 119.51671 * 22 17 15 24 24 C 1.52000 * 112.64323 * 51.76705 * 23 22 17 25 25 C 1.51983 * 113.61503 * 312.47101 * 24 23 22 26 26 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47358 * 59.99809 * 9 7 2 28 28 H 1.09006 * 109.47572 * 299.99858 * 9 7 2 29 29 H 1.09002 * 109.47224 * 59.99669 * 10 9 7 30 30 H 1.09006 * 109.47246 * 300.00117 * 10 9 7 31 31 H 1.09002 * 109.47352 * 59.99507 * 11 10 9 32 32 H 1.09006 * 109.47174 * 299.99804 * 11 10 9 33 33 H 0.97003 * 119.99393 * 359.97438 * 12 11 10 34 34 H 1.10146 * 109.22010 * 359.78446 * 18 17 15 35 35 H 1.09752 * 109.10854 * 289.68790 * 19 18 17 36 36 H 1.09794 * 109.02764 * 172.79536 * 19 18 17 37 37 H 1.08686 * 111.00771 * 79.68694 * 20 19 18 38 38 H 1.10940 * 107.46279 * 194.50436 * 20 19 18 39 39 H 1.09810 * 109.12403 * 167.75144 * 21 20 19 40 40 H 1.09758 * 109.22078 * 284.70299 * 21 20 19 41 41 H 1.10142 * 109.22790 * 0.03034 * 22 17 15 42 42 H 1.09735 * 109.10608 * 290.33728 * 23 22 17 43 43 H 1.09716 * 109.11542 * 173.25840 * 23 22 17 44 44 H 1.10835 * 107.57975 * 193.47510 * 24 23 22 45 45 H 1.08629 * 110.96469 * 78.39160 * 24 23 22 46 46 H 1.09745 * 109.17500 * 285.84323 * 25 24 23 47 47 H 1.09752 * 109.18029 * 168.75203 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4319 -6.1008 -0.0006 13 6 1.9825 -7.3714 -0.0015 14 8 0.7895 -7.5930 -0.0024 15 6 2.9537 -8.5074 -0.0014 16 8 4.1422 -8.2897 -0.1141 17 7 2.5100 -9.7720 0.1234 18 6 1.1051 -10.0885 0.4311 19 6 0.5303 -10.9133 -0.7166 20 6 1.3948 -12.1108 -1.0730 21 6 2.8746 -11.7883 -1.1937 22 6 3.3948 -10.9380 -0.0388 23 6 3.4005 -11.7287 1.2664 24 6 2.0001 -12.0556 1.7588 25 6 1.0561 -10.8647 1.7439 26 1 -0.4850 0.8401 0.0004 27 1 0.6238 -2.5566 -0.8903 28 1 0.6245 -2.5571 0.8897 29 1 2.8717 -3.6044 0.8894 30 1 2.8717 -3.6044 -0.8905 31 1 0.8535 -5.0446 -0.8913 32 1 0.8530 -5.0451 0.8886 33 1 3.3856 -5.9235 -0.0002 34 1 0.5364 -9.1509 0.5343 35 1 0.4195 -10.2715 -1.6000 36 1 -0.4728 -11.2627 -0.4390 37 1 1.2295 -12.9310 -0.3793 38 1 1.0539 -12.4855 -2.0600 39 1 3.4450 -12.7258 -1.2328 40 1 3.0532 -11.2591 -2.1385 41 1 4.4151 -10.5904 -0.2652 42 1 3.9271 -11.1491 2.0352 43 1 3.9588 -12.6617 1.1188 44 1 2.0865 -12.4017 2.8082 45 1 1.5801 -12.8926 1.2083 46 1 1.3138 -10.1900 2.5702 47 1 0.0304 -11.2154 1.9153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322508183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:40 Heat of formation + Delta-G solvation = -84.867104 kcal Electronic energy + Delta-G solvation = -25997.491299 eV Core-core repulsion = 22372.380217 eV Total energy + Delta-G solvation = -3625.111083 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36396 -39.50924 -38.06189 -35.73528 -33.53380 -33.25135 -33.03724 -32.88698 -31.26190 -27.45490 -26.49876 -26.30493 -24.34200 -22.74079 -22.19648 -21.30099 -20.91016 -20.30855 -18.50894 -17.33818 -17.02667 -16.41621 -16.05628 -15.79735 -15.46442 -14.95032 -14.83876 -14.46608 -14.20588 -14.12871 -14.01739 -13.80842 -13.76868 -13.60193 -13.33857 -12.33028 -12.03665 -12.01166 -11.87205 -11.83716 -11.79521 -11.56798 -11.32506 -11.28748 -10.92265 -10.77309 -10.69095 -10.60381 -10.52970 -10.17675 -9.91323 -9.58744 -9.19292 -9.08643 -8.94469 -8.80282 -8.38693 -6.03557 -4.06478 1.42791 2.28929 3.20623 3.30713 3.37079 3.40048 3.48220 4.21519 4.40090 4.44487 4.49639 4.56391 4.57824 4.67193 4.84007 4.85795 4.93049 5.09997 5.24044 5.32545 5.37709 5.50609 5.55978 5.57812 5.61917 5.65732 5.67563 5.68965 5.71865 5.81837 5.83854 5.87155 5.94813 6.06450 6.19199 6.25362 6.41438 6.52780 6.72724 6.94174 7.06165 7.33648 7.60771 7.72346 7.75676 7.94869 8.05519 8.36183 9.00059 9.57936 11.07750 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.033289 B = 0.002388 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.922174 B =11721.522964 C =11986.323697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.688 5.688 13 C 0.503 3.497 14 O -0.518 6.518 15 C 0.513 3.487 16 O -0.527 6.527 17 N -0.574 5.574 18 C 0.095 3.905 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.122 4.122 22 C 0.139 3.861 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.123 4.123 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.411 0.589 34 H 0.156 0.844 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.513 -28.156 1.005 28.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.339 5.339 13 C 0.284 3.716 14 O -0.397 6.397 15 C 0.296 3.704 16 O -0.403 6.403 17 N -0.307 5.307 18 C -0.007 4.007 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.160 4.160 22 C 0.037 3.963 23 C -0.160 4.160 24 C -0.154 4.154 25 C -0.162 4.162 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.247 0.753 34 H 0.173 0.827 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.156 -28.022 0.944 28.215 hybrid contribution 0.870 0.900 -0.031 1.252 sum 4.025 -27.122 0.913 27.434 Atomic orbital electron populations 1.69962 1.06065 1.26724 1.50571 1.25026 0.94862 0.99326 0.95227 0.86573 0.79823 0.83361 0.78126 1.20638 1.21202 1.19861 1.21202 0.93060 0.90889 1.50959 0.92573 1.19027 0.93781 0.90772 0.97700 1.21930 0.99886 0.92956 1.01326 1.21864 0.91739 0.84719 1.02573 1.46114 1.12285 1.04972 1.70556 1.20086 0.88476 0.84531 0.78482 1.90413 1.16505 1.82921 1.49824 1.20097 0.88412 0.83878 0.77983 1.90744 1.16379 1.84129 1.49056 1.48135 1.11343 1.04029 1.67195 1.22631 0.81584 1.03083 0.93414 1.21556 0.98783 0.96716 0.98679 1.21231 0.94347 0.97935 1.01862 1.21612 0.96460 0.99918 0.97988 1.21321 0.95011 0.85163 0.94840 1.21618 0.97384 1.00249 0.96707 1.21239 0.94888 0.97998 1.01287 1.21653 1.00007 0.97215 0.97278 0.92910 0.96201 0.96201 0.92428 0.92428 0.91020 0.91012 0.75260 0.82735 0.91705 0.90920 0.91327 0.92852 0.90900 0.91853 0.88201 0.91778 0.90927 0.92833 0.91230 0.92001 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.52 16 11 C 0.11 1.91 5.67 -4.04 -0.02 1.88 16 12 N -0.69 -10.31 5.55 -60.73 -0.34 -10.64 16 13 C 0.50 7.54 7.79 -11.59 -0.09 7.45 16 14 O -0.52 -8.32 13.22 5.50 0.07 -8.25 16 15 C 0.51 7.20 7.79 -11.66 -0.09 7.10 16 16 O -0.53 -8.28 16.07 5.50 0.09 -8.19 16 17 N -0.57 -6.60 2.51 -158.02 -0.40 -7.00 16 18 C 0.09 0.97 2.96 -67.95 -0.20 0.77 16 19 C -0.12 -1.05 5.45 -27.49 -0.15 -1.20 16 20 C -0.12 -0.84 4.96 -27.82 -0.14 -0.98 16 21 C -0.12 -0.94 5.45 -27.50 -0.15 -1.09 16 22 C 0.14 1.31 3.22 -67.94 -0.22 1.09 16 23 C -0.12 -0.93 5.46 -27.44 -0.15 -1.08 16 24 C -0.12 -0.83 4.99 -27.76 -0.14 -0.97 16 25 C -0.12 -1.04 5.46 -27.46 -0.15 -1.19 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.41 5.71 7.96 -40.82 -0.32 5.39 16 34 H 0.16 1.95 4.26 -54.26 -0.23 1.72 16 35 H 0.06 0.66 8.20 -51.50 -0.42 0.24 16 36 H 0.07 0.54 8.21 -51.48 -0.42 0.12 16 37 H 0.07 0.42 5.65 -52.11 -0.29 0.13 16 38 H 0.05 0.36 8.29 -50.81 -0.42 -0.06 16 39 H 0.07 0.43 8.21 -51.47 -0.42 0.01 16 40 H 0.06 0.55 8.21 -51.50 -0.42 0.13 16 41 H 0.10 1.05 7.22 -51.28 -0.37 0.68 16 42 H 0.06 0.56 8.20 -51.51 -0.42 0.13 16 43 H 0.07 0.43 8.20 -51.52 -0.42 0.01 16 44 H 0.05 0.35 8.29 -50.87 -0.42 -0.07 16 45 H 0.07 0.43 5.59 -52.14 -0.29 0.13 16 46 H 0.06 0.58 8.20 -51.51 -0.42 0.16 16 47 H 0.07 0.53 8.20 -51.50 -0.42 0.11 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -30.84 363.29 -9.38 -40.22 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.81 Total: 1.37 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -2.19 Total: -3.55 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.00 Total: -43.52 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.16 Total: -16.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.84 -9.38 -40.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322508183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.642 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds