Wall clock time and date at job start Tue Mar 31 2020 10:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00475 * 2 1 4 4 H 1.48492 * 109.47241 * 270.00079 * 3 2 1 5 5 H 1.48500 * 109.47020 * 30.00261 * 3 2 1 6 6 H 1.48505 * 109.47145 * 149.99849 * 3 2 1 7 7 C 1.37885 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00348 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99617 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47493 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47530 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00186 * 180.02562 * 12 11 10 14 14 O 1.21346 * 119.99992 * 359.97438 * 13 12 11 15 15 C 1.49450 * 119.99827 * 179.97438 * 13 12 11 16 16 O 1.21352 * 120.00258 * 353.79934 * 15 13 12 17 17 N 1.34601 * 119.99837 * 173.80539 * 15 13 12 18 18 C 1.47260 * 122.39647 * 352.16167 * 17 15 13 19 19 C 1.52577 * 108.56640 * 119.29881 * 18 17 15 20 20 C 1.51930 * 112.84001 * 51.31586 * 19 18 17 21 21 C 1.51930 * 113.92721 * 313.44712 * 20 19 18 22 22 C 1.47264 * 122.38932 * 172.11984 * 17 15 13 23 23 C 1.52607 * 108.55930 * 119.51671 * 22 17 15 24 24 C 1.52000 * 112.64323 * 51.76705 * 23 22 17 25 25 C 1.51983 * 113.61503 * 312.47101 * 24 23 22 26 26 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47358 * 59.99809 * 9 7 2 28 28 H 1.09006 * 109.47572 * 299.99858 * 9 7 2 29 29 H 1.09002 * 109.47224 * 59.99669 * 10 9 7 30 30 H 1.09006 * 109.47246 * 300.00117 * 10 9 7 31 31 H 1.09002 * 109.47352 * 59.99507 * 11 10 9 32 32 H 1.09006 * 109.47174 * 299.99804 * 11 10 9 33 33 H 0.97003 * 119.99393 * 359.97438 * 12 11 10 34 34 H 1.10146 * 109.22010 * 359.78446 * 18 17 15 35 35 H 1.09752 * 109.10854 * 289.68790 * 19 18 17 36 36 H 1.09794 * 109.02764 * 172.79536 * 19 18 17 37 37 H 1.08686 * 111.00771 * 79.68694 * 20 19 18 38 38 H 1.10940 * 107.46279 * 194.50436 * 20 19 18 39 39 H 1.09810 * 109.12403 * 167.75144 * 21 20 19 40 40 H 1.09758 * 109.22078 * 284.70299 * 21 20 19 41 41 H 1.10142 * 109.22790 * 0.03034 * 22 17 15 42 42 H 1.09735 * 109.10608 * 290.33728 * 23 22 17 43 43 H 1.09716 * 109.11542 * 173.25840 * 23 22 17 44 44 H 1.10835 * 107.57975 * 193.47510 * 24 23 22 45 45 H 1.08629 * 110.96469 * 78.39160 * 24 23 22 46 46 H 1.09745 * 109.17500 * 285.84323 * 25 24 23 47 47 H 1.09752 * 109.18029 * 168.75203 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4319 -6.1008 -0.0006 13 6 1.9825 -7.3714 -0.0015 14 8 0.7895 -7.5930 -0.0024 15 6 2.9537 -8.5074 -0.0014 16 8 4.1422 -8.2897 -0.1141 17 7 2.5100 -9.7720 0.1234 18 6 1.1051 -10.0885 0.4311 19 6 0.5303 -10.9133 -0.7166 20 6 1.3948 -12.1108 -1.0730 21 6 2.8746 -11.7883 -1.1937 22 6 3.3948 -10.9380 -0.0388 23 6 3.4005 -11.7287 1.2664 24 6 2.0001 -12.0556 1.7588 25 6 1.0561 -10.8647 1.7439 26 1 -0.4850 0.8401 0.0004 27 1 0.6238 -2.5566 -0.8903 28 1 0.6245 -2.5571 0.8897 29 1 2.8717 -3.6044 0.8894 30 1 2.8717 -3.6044 -0.8905 31 1 0.8535 -5.0446 -0.8913 32 1 0.8530 -5.0451 0.8886 33 1 3.3856 -5.9235 -0.0002 34 1 0.5364 -9.1509 0.5343 35 1 0.4195 -10.2715 -1.6000 36 1 -0.4728 -11.2627 -0.4390 37 1 1.2295 -12.9310 -0.3793 38 1 1.0539 -12.4855 -2.0600 39 1 3.4450 -12.7258 -1.2328 40 1 3.0532 -11.2591 -2.1385 41 1 4.4151 -10.5904 -0.2652 42 1 3.9271 -11.1491 2.0352 43 1 3.9588 -12.6617 1.1188 44 1 2.0865 -12.4017 2.8082 45 1 1.5801 -12.8926 1.2083 46 1 1.3138 -10.1900 2.5702 47 1 0.0304 -11.2154 1.9153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322508183.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:40 Heat of formation + Delta-G solvation = -103.703002 kcal Electronic energy + Delta-G solvation = -25998.308085 eV Core-core repulsion = 22372.380217 eV Total energy + Delta-G solvation = -3625.927869 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.33652 -40.54623 -39.15949 -37.19852 -35.32433 -33.98564 -33.84898 -33.69185 -33.05078 -29.07569 -27.40024 -27.13929 -25.71975 -24.15173 -23.06848 -22.39657 -21.90542 -21.62805 -19.55302 -18.51873 -18.24631 -17.99128 -17.24141 -16.94099 -16.47405 -16.32439 -16.17190 -15.88174 -15.26595 -15.08589 -14.81036 -14.68508 -14.52950 -14.42376 -14.28377 -14.15912 -13.78718 -13.53431 -12.90320 -12.76819 -12.71537 -12.57696 -12.55067 -12.40888 -12.25993 -11.99593 -11.89736 -11.72524 -11.63950 -11.46459 -11.26391 -11.20677 -10.79712 -10.55449 -10.37111 -10.09647 -9.67317 -8.20251 -6.31076 0.26607 1.21989 1.41651 1.42422 1.53549 2.04747 2.38121 2.44320 3.13727 3.21920 3.60927 3.85775 3.86909 3.97042 3.99670 4.06562 4.12248 4.16655 4.26726 4.34127 4.38640 4.48408 4.51454 4.66343 4.84202 4.90137 4.92513 4.98534 5.00556 5.03700 5.07747 5.11887 5.12991 5.13388 5.15758 5.21670 5.26517 5.33481 5.48456 5.52296 5.66843 5.69822 5.83668 6.00171 6.21178 6.24320 6.65775 6.85716 6.87474 7.38279 8.91717 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.033289 B = 0.002388 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.922174 B =11721.522964 C =11986.323697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.106 4.106 11 C 0.128 3.872 12 N -0.685 5.685 13 C 0.502 3.498 14 O -0.531 6.531 15 C 0.511 3.489 16 O -0.550 6.550 17 N -0.567 5.567 18 C 0.089 3.911 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.119 4.119 22 C 0.133 3.867 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.121 4.121 26 H 0.264 0.736 27 H -0.004 1.004 28 H -0.003 1.003 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.418 0.582 34 H 0.131 0.869 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.049 0.951 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.464 -30.283 1.225 30.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.012 4.012 10 C -0.144 4.144 11 C 0.005 3.995 12 N -0.337 5.337 13 C 0.284 3.716 14 O -0.410 6.410 15 C 0.293 3.707 16 O -0.429 6.429 17 N -0.299 5.299 18 C -0.012 4.012 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.157 4.157 22 C 0.031 3.969 23 C -0.156 4.156 24 C -0.152 4.152 25 C -0.159 4.159 26 H 0.072 0.928 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.255 0.745 34 H 0.147 0.853 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.117 0.883 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.108 -30.195 1.167 30.495 hybrid contribution 0.516 1.499 -0.096 1.588 sum 4.624 -28.696 1.071 29.086 Atomic orbital electron populations 1.70095 1.07795 1.27806 1.51627 1.25975 0.95755 1.03380 0.94773 0.85448 0.78678 0.78480 0.78450 1.19849 1.20871 1.18686 1.21677 0.93685 0.92167 1.50557 0.91859 1.18921 0.94297 0.92493 0.95453 1.21643 0.98659 0.91978 1.02131 1.21494 0.91524 0.84374 1.02101 1.45938 1.12257 1.04642 1.70822 1.20364 0.88589 0.84721 0.77935 1.90443 1.17142 1.83282 1.50140 1.19871 0.87796 0.84462 0.78582 1.90727 1.16880 1.84495 1.50839 1.48318 1.12402 1.03789 1.65356 1.22650 0.80547 1.02671 0.95346 1.21551 1.00048 0.96889 0.97032 1.21224 0.93406 0.97494 1.03037 1.21624 0.97298 1.00496 0.96290 1.21583 0.93918 0.84625 0.96788 1.21624 0.98186 1.00795 0.95031 1.21235 0.93967 0.97628 1.02391 1.21647 1.01602 0.97408 0.95269 0.92755 0.98522 0.98441 0.91517 0.91616 0.91665 0.91467 0.74498 0.85270 0.93833 0.89260 0.89227 0.91886 0.88184 0.93316 0.89712 0.93231 0.88297 0.91688 0.89306 0.93492 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 3 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.11 -4.13 5.27 30.59 0.16 -3.97 16 11 C 0.13 4.40 5.67 86.38 0.49 4.89 16 12 N -0.69 -20.80 5.55 -464.40 -2.58 -23.37 16 13 C 0.50 15.42 7.79 87.27 0.68 16.10 16 14 O -0.53 -17.58 13.22 -3.24 -0.04 -17.63 16 15 C 0.51 14.59 7.79 87.30 0.68 15.27 16 16 O -0.55 -17.62 16.07 -3.25 -0.05 -17.67 16 17 N -0.57 -12.91 2.51 -772.30 -1.94 -14.85 16 18 C 0.09 1.79 2.96 44.57 0.13 1.92 16 19 C -0.12 -1.89 5.45 30.10 0.16 -1.73 16 20 C -0.11 -1.33 4.96 29.89 0.15 -1.18 16 21 C -0.12 -1.57 5.45 30.10 0.16 -1.41 16 22 C 0.13 2.32 3.22 44.57 0.14 2.47 16 23 C -0.12 -1.54 5.46 30.13 0.16 -1.37 16 24 C -0.12 -1.27 4.99 29.93 0.15 -1.12 16 25 C -0.12 -1.84 5.46 30.12 0.16 -1.68 16 26 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 27 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.00 -0.16 8.14 -2.38 -0.02 -0.17 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.42 11.64 7.96 -92.71 -0.74 10.90 16 34 H 0.13 3.33 4.26 -49.07 -0.21 3.12 16 35 H 0.04 0.88 8.20 -1.99 -0.02 0.86 16 36 H 0.09 1.14 8.21 -1.96 -0.02 1.13 16 37 H 0.09 0.70 5.65 -2.55 -0.01 0.69 16 38 H 0.06 0.66 8.29 -1.34 -0.01 0.65 16 39 H 0.10 0.82 8.21 -1.95 -0.02 0.80 16 40 H 0.05 0.79 8.21 -1.98 -0.02 0.77 16 41 H 0.08 1.75 7.22 -1.78 -0.01 1.74 16 42 H 0.05 0.79 8.20 -1.99 -0.02 0.78 16 43 H 0.10 0.81 8.20 -2.01 -0.02 0.79 16 44 H 0.06 0.63 8.29 -1.40 -0.01 0.62 16 45 H 0.09 0.68 5.59 -2.58 -0.01 0.66 16 46 H 0.05 0.85 8.20 -1.99 -0.02 0.83 16 47 H 0.09 1.08 8.20 -1.99 -0.02 1.07 16 Total: -1.00 -67.60 363.29 1.86 -65.74 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.07 Total: 18.13 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 4.08 Total: -0.08 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -4.23 Total: -94.54 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.10 Total: -35.30 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.60 1.86 -65.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322508183.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.964 kcal (2) G-P(sol) polarization free energy of solvation -67.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds