Wall clock time and date at job start Tue Mar 31 2020 09:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09011 * 109.47022 * 2 1 4 4 N 1.46498 * 109.47346 * 240.00048 * 2 1 3 5 5 C 1.38822 * 120.00339 * 84.99697 * 4 2 1 6 6 C 1.39799 * 119.57888 * 359.72856 * 5 4 2 7 7 C 1.38599 * 119.48555 * 179.79003 * 6 5 4 8 8 C 1.38388 * 118.68099 * 0.48022 * 7 6 5 9 9 C 1.40551 * 119.14930 * 359.74219 * 8 7 6 10 10 C 1.41319 * 119.78449 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99931 * 0.02562 * 10 9 8 12 12 C 1.40020 * 120.00127 * 180.02562 * 10 9 8 13 13 N 1.30750 * 120.00018 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00118 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47128 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46908 * 120.00152 * 14 12 10 17 17 H 1.48504 * 109.47121 * 239.99735 * 14 12 10 18 18 N 1.31955 * 119.58540 * 180.02562 * 5 4 2 19 19 C 1.50701 * 109.47335 * 119.99743 * 2 1 3 20 20 C 1.38253 * 119.99890 * 80.02005 * 19 2 1 21 21 C 1.38220 * 120.00051 * 180.02562 * 20 19 2 22 22 C 1.38255 * 119.99697 * 359.95697 * 21 20 19 23 23 C 1.38217 * 120.00132 * 0.07194 * 22 21 20 24 24 C 1.50706 * 119.99801 * 179.97438 * 23 22 21 25 25 C 1.52999 * 117.49901 * 8.57312 * 24 23 22 26 26 C 1.52999 * 117.49602 * 299.95205 * 24 23 22 27 27 C 1.38215 * 119.99815 * 260.00167 * 19 2 1 28 28 H 1.09005 * 109.46752 * 300.00050 * 1 2 3 29 29 H 1.08996 * 109.47339 * 60.00377 * 1 2 3 30 30 H 1.08998 * 109.47201 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99727 * 264.99731 * 4 2 1 32 32 H 1.07995 * 120.26111 * 359.97438 * 6 5 4 33 33 H 1.07999 * 120.66181 * 180.22399 * 7 6 5 34 34 H 1.08000 * 120.42706 * 179.76732 * 8 7 6 35 35 H 0.96998 * 119.99846 * 179.97438 * 13 12 10 36 36 H 1.08002 * 120.00348 * 359.97438 * 20 19 2 37 37 H 1.07999 * 120.00153 * 179.97438 * 21 20 19 38 38 H 1.08005 * 119.99785 * 180.02562 * 22 21 20 39 39 H 1.09000 * 115.54945 * 154.28522 * 24 23 22 40 40 H 1.08994 * 117.50002 * 359.97438 * 25 24 23 41 41 H 1.09000 * 117.49885 * 145.02681 * 25 24 23 42 42 H 1.08998 * 117.49543 * 214.98114 * 26 24 23 43 43 H 1.09001 * 117.49949 * 359.97438 * 26 24 23 44 44 H 1.07995 * 120.00164 * 359.72517 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1509 0.0019 -2.3920 6 6 1.8105 1.3567 -2.4463 7 6 1.9477 2.0472 -3.6402 8 6 2.4116 1.3661 -4.7519 9 6 2.7329 0.0028 -4.6348 10 6 3.2082 -0.7057 -5.7613 11 1 3.3241 -0.1994 -6.7083 12 6 3.5291 -2.0641 -5.6499 13 7 3.3894 -2.6769 -4.5034 14 14 4.1582 -3.0004 -7.1389 15 1 4.2260 -2.0855 -8.3066 16 1 5.5125 -3.5369 -6.8503 17 1 3.2355 -4.1235 -7.4435 18 7 2.5911 -0.6284 -3.4645 19 6 2.0324 -0.7103 1.2305 20 6 2.0672 -2.0920 1.2652 21 6 2.5275 -2.7436 2.3940 22 6 2.9539 -2.0135 3.4879 23 6 2.9185 -0.6322 3.4534 24 6 3.3828 0.1634 4.6461 25 6 4.0666 -0.6001 5.7820 26 6 2.6491 -0.0560 5.9706 27 6 2.4587 0.0195 2.3241 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.2491 -1.6317 -1.1525 32 1 1.4461 1.8621 -1.5642 33 1 1.6937 3.0951 -3.7027 34 1 2.5258 1.8756 -5.6973 35 1 3.6113 -3.6180 -4.4263 36 1 1.7340 -2.6623 0.4107 37 1 2.5543 -3.8229 2.4213 38 1 3.3139 -2.5226 4.3698 39 1 3.7400 1.1702 4.4294 40 1 4.1803 -1.6780 5.6668 41 1 4.8741 -0.0958 6.3128 42 1 2.5241 0.8063 6.6255 43 1 1.8304 -0.7756 5.9793 44 1 2.4359 1.0988 2.2951 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347840357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:17 Heat of formation + Delta-G solvation = 85.694859 kcal Electronic energy + Delta-G solvation = -24044.216777 eV Core-core repulsion = 20733.810736 eV Total energy + Delta-G solvation = -3310.406041 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.93862 -38.35368 -37.22197 -35.38800 -33.39257 -31.62762 -30.77565 -30.24561 -29.01094 -27.93628 -25.36871 -24.27013 -23.16798 -22.56777 -21.94183 -21.32699 -20.52009 -19.12884 -17.35677 -17.16739 -16.39376 -15.70046 -15.24050 -15.02023 -14.69317 -14.42368 -14.09695 -13.93093 -13.52531 -13.35205 -13.24789 -12.75596 -12.56877 -12.36083 -12.16509 -11.93176 -11.83326 -11.66591 -11.38927 -11.20040 -11.04323 -10.94840 -10.82241 -10.72657 -10.58829 -10.41758 -10.33693 -9.86259 -9.51059 -8.91295 -8.70816 -8.48402 -7.88674 -7.47674 -6.48648 -6.29978 -4.44376 1.34540 1.42173 2.88752 3.13125 3.17555 3.27044 3.31993 3.48207 3.95121 4.00508 4.18801 4.42725 4.64065 4.75693 4.82384 4.87571 4.94580 5.03293 5.13786 5.37133 5.44478 5.50915 5.56821 5.63876 5.68764 5.82319 5.84655 5.92237 6.04697 6.07775 6.10259 6.16666 6.21772 6.45706 6.54242 6.57622 6.59553 6.73257 6.88597 6.93174 6.99315 7.03986 7.28090 7.63127 7.84533 7.95493 8.19966 8.39879 8.71371 8.83456 9.15366 10.27653 10.43394 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018424 B = 0.003099 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.363706 B = 9032.324351 C = 9926.286605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.201 3.799 3 H 0.083 0.917 4 N -0.731 5.731 5 C 0.414 3.586 6 C -0.368 4.368 7 C -0.032 4.032 8 C -0.317 4.317 9 C 0.293 3.707 10 C -0.434 4.434 11 H 0.083 0.917 12 C 0.071 3.929 13 N -0.715 5.715 14 Si 0.904 3.096 15 H -0.261 1.261 16 H -0.274 1.274 17 H -0.274 1.274 18 N -0.532 5.532 19 C -0.074 4.074 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.127 4.127 23 C -0.054 4.054 24 C -0.115 4.115 25 C -0.178 4.178 26 C -0.171 4.171 27 C -0.105 4.105 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.395 0.605 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.268 0.732 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 0.780 17.470 17.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 H 0.101 0.899 4 N -0.368 5.368 5 C 0.174 3.826 6 C -0.394 4.394 7 C -0.056 4.056 8 C -0.341 4.341 9 C 0.166 3.834 10 C -0.466 4.466 11 H 0.101 0.899 12 C -0.154 4.154 13 N -0.337 5.337 14 Si 0.728 3.272 15 H -0.185 1.185 16 H -0.200 1.200 17 H -0.200 1.200 18 N -0.253 5.253 19 C -0.075 4.075 20 C -0.129 4.129 21 C -0.132 4.132 22 C -0.145 4.145 23 C -0.054 4.054 24 C -0.133 4.133 25 C -0.215 4.215 26 C -0.207 4.207 27 C -0.123 4.123 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.231 0.769 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.519 -0.137 17.690 17.756 hybrid contribution 0.165 0.112 -0.669 0.698 sum -1.354 -0.025 17.021 17.074 Atomic orbital electron populations 1.22275 0.95604 1.02188 1.01870 1.19522 0.93202 0.95995 0.81930 0.89869 1.44285 1.74248 1.12187 1.06093 1.18503 0.89744 0.87584 0.86761 1.20628 1.24883 0.95186 0.98653 1.20595 0.95228 0.96903 0.92920 1.21527 1.17429 0.97046 0.98048 1.18203 0.87269 0.88100 0.89871 1.19610 1.37121 0.93996 0.95921 0.89897 1.26048 0.94454 0.98272 0.96598 1.70167 1.29983 1.09776 1.23795 0.86338 0.78894 0.79769 0.82164 1.18463 1.19972 1.19980 1.68211 1.23484 1.36009 0.97591 1.20065 0.98099 0.93968 0.95328 1.21020 0.99651 0.94077 0.98158 1.21082 0.98969 0.99750 0.93367 1.20962 1.01358 0.93423 0.98778 1.19034 0.99222 0.93162 0.94029 1.21025 1.04530 0.99833 0.87875 1.23059 0.95876 1.00606 1.01967 1.23015 0.95609 1.03490 0.98629 1.20757 0.99343 0.99718 0.92496 0.92598 0.91446 0.92608 0.76944 0.89077 0.89004 0.88777 0.92060 0.85785 0.86095 0.86342 0.86977 0.88373 0.88533 0.88566 0.88622 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.37 37.16 0.35 -2.01 16 2 C 0.20 3.24 2.46 -69.08 -0.17 3.07 16 3 H 0.08 1.38 6.31 -51.92 -0.33 1.05 16 4 N -0.73 -14.84 5.19 -55.03 -0.29 -15.12 16 5 C 0.41 10.15 7.63 -155.32 -1.18 8.97 16 6 C -0.37 -8.48 8.83 -38.86 -0.34 -8.82 16 7 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 8 C -0.32 -8.13 9.83 -38.65 -0.38 -8.51 16 9 C 0.29 8.24 6.55 -85.00 -0.56 7.69 16 10 C -0.43 -11.91 9.14 -37.74 -0.34 -12.25 16 11 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 12 C 0.07 1.84 5.50 -17.34 -0.10 1.75 16 13 N -0.72 -19.19 11.46 55.55 0.64 -18.56 16 14 Si 0.90 18.94 29.56 -169.99 -5.02 13.92 16 15 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 N -0.53 -14.83 7.89 -10.33 -0.08 -14.91 16 19 C -0.07 -1.07 4.95 -104.62 -0.52 -1.59 16 20 C -0.11 -1.55 9.06 -39.58 -0.36 -1.91 16 21 C -0.11 -1.39 10.05 -39.58 -0.40 -1.79 16 22 C -0.13 -1.46 9.30 -39.58 -0.37 -1.83 16 23 C -0.05 -0.64 5.61 -104.62 -0.59 -1.23 16 24 C -0.11 -1.10 6.04 -91.77 -0.55 -1.65 16 25 C -0.18 -1.43 9.86 -26.73 -0.26 -1.69 16 26 C -0.17 -1.36 10.16 -26.73 -0.27 -1.63 16 27 C -0.10 -1.36 9.36 -39.58 -0.37 -1.73 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.10 7.62 -51.93 -0.40 0.70 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.39 8.09 6.99 -40.82 -0.29 7.81 16 32 H 0.09 1.86 6.03 -52.49 -0.32 1.54 16 33 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.09 2.25 8.06 -52.49 -0.42 1.82 16 35 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 36 H 0.12 1.76 6.92 -52.49 -0.36 1.39 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.12 6.02 -52.48 -0.32 0.80 16 39 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.10 0.76 6.18 -51.93 -0.32 0.44 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.12 1.41 8.04 -52.49 -0.42 0.99 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -30.08 362.50 -12.21 -42.28 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -6.10 Total: 13.25 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -6.82 Total: -26.32 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.27 Total: -48.59 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.08 -12.21 -42.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347840357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.979 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds