Wall clock time and date at job start Tue Mar 31 2020 09:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09011 * 109.47022 * 2 1 4 4 N 1.46498 * 109.47346 * 240.00048 * 2 1 3 5 5 C 1.38822 * 120.00339 * 84.99697 * 4 2 1 6 6 C 1.39799 * 119.57888 * 359.72856 * 5 4 2 7 7 C 1.38599 * 119.48555 * 179.79003 * 6 5 4 8 8 C 1.38388 * 118.68099 * 0.48022 * 7 6 5 9 9 C 1.40551 * 119.14930 * 359.74219 * 8 7 6 10 10 C 1.41319 * 119.78449 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99931 * 0.02562 * 10 9 8 12 12 C 1.40020 * 120.00127 * 180.02562 * 10 9 8 13 13 N 1.30750 * 120.00018 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00118 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47128 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46908 * 120.00152 * 14 12 10 17 17 H 1.48504 * 109.47121 * 239.99735 * 14 12 10 18 18 N 1.31955 * 119.58540 * 180.02562 * 5 4 2 19 19 C 1.50701 * 109.47335 * 119.99743 * 2 1 3 20 20 C 1.38253 * 119.99890 * 80.02005 * 19 2 1 21 21 C 1.38220 * 120.00051 * 180.02562 * 20 19 2 22 22 C 1.38255 * 119.99697 * 359.95697 * 21 20 19 23 23 C 1.38217 * 120.00132 * 0.07194 * 22 21 20 24 24 C 1.50706 * 119.99801 * 179.97438 * 23 22 21 25 25 C 1.52999 * 117.49901 * 8.57312 * 24 23 22 26 26 C 1.52999 * 117.49602 * 299.95205 * 24 23 22 27 27 C 1.38215 * 119.99815 * 260.00167 * 19 2 1 28 28 H 1.09005 * 109.46752 * 300.00050 * 1 2 3 29 29 H 1.08996 * 109.47339 * 60.00377 * 1 2 3 30 30 H 1.08998 * 109.47201 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99727 * 264.99731 * 4 2 1 32 32 H 1.07995 * 120.26111 * 359.97438 * 6 5 4 33 33 H 1.07999 * 120.66181 * 180.22399 * 7 6 5 34 34 H 1.08000 * 120.42706 * 179.76732 * 8 7 6 35 35 H 0.96998 * 119.99846 * 179.97438 * 13 12 10 36 36 H 1.08002 * 120.00348 * 359.97438 * 20 19 2 37 37 H 1.07999 * 120.00153 * 179.97438 * 21 20 19 38 38 H 1.08005 * 119.99785 * 180.02562 * 22 21 20 39 39 H 1.09000 * 115.54945 * 154.28522 * 24 23 22 40 40 H 1.08994 * 117.50002 * 359.97438 * 25 24 23 41 41 H 1.09000 * 117.49885 * 145.02681 * 25 24 23 42 42 H 1.08998 * 117.49543 * 214.98114 * 26 24 23 43 43 H 1.09001 * 117.49949 * 359.97438 * 26 24 23 44 44 H 1.07995 * 120.00164 * 359.72517 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1509 0.0019 -2.3920 6 6 1.8105 1.3567 -2.4463 7 6 1.9477 2.0472 -3.6402 8 6 2.4116 1.3661 -4.7519 9 6 2.7329 0.0028 -4.6348 10 6 3.2082 -0.7057 -5.7613 11 1 3.3241 -0.1994 -6.7083 12 6 3.5291 -2.0641 -5.6499 13 7 3.3894 -2.6769 -4.5034 14 14 4.1582 -3.0004 -7.1389 15 1 4.2260 -2.0855 -8.3066 16 1 5.5125 -3.5369 -6.8503 17 1 3.2355 -4.1235 -7.4435 18 7 2.5911 -0.6284 -3.4645 19 6 2.0324 -0.7103 1.2305 20 6 2.0672 -2.0920 1.2652 21 6 2.5275 -2.7436 2.3940 22 6 2.9539 -2.0135 3.4879 23 6 2.9185 -0.6322 3.4534 24 6 3.3828 0.1634 4.6461 25 6 4.0666 -0.6001 5.7820 26 6 2.6491 -0.0560 5.9706 27 6 2.4587 0.0195 2.3241 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.2491 -1.6317 -1.1525 32 1 1.4461 1.8621 -1.5642 33 1 1.6937 3.0951 -3.7027 34 1 2.5258 1.8756 -5.6973 35 1 3.6113 -3.6180 -4.4263 36 1 1.7340 -2.6623 0.4107 37 1 2.5543 -3.8229 2.4213 38 1 3.3139 -2.5226 4.3698 39 1 3.7400 1.1702 4.4294 40 1 4.1803 -1.6780 5.6668 41 1 4.8741 -0.0958 6.3128 42 1 2.5241 0.8063 6.6255 43 1 1.8304 -0.7756 5.9793 44 1 2.4359 1.0988 2.2951 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347840357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:16 Heat of formation + Delta-G solvation = 72.343987 kcal Electronic energy + Delta-G solvation = -24044.795715 eV Core-core repulsion = 20733.810736 eV Total energy + Delta-G solvation = -3310.984979 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.158 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.97747 -40.04938 -38.26609 -36.70736 -35.24504 -33.13627 -32.12029 -31.75127 -30.33742 -29.54279 -27.29632 -25.25674 -24.26532 -23.52489 -23.22778 -22.70276 -22.11262 -20.30231 -19.16201 -18.44757 -17.72473 -16.79870 -16.62052 -16.51680 -16.02629 -15.90410 -15.38633 -15.16375 -14.89039 -14.78563 -14.54015 -14.27251 -13.97048 -13.62756 -13.44969 -13.20982 -13.10094 -12.88319 -12.71974 -12.63100 -12.57332 -12.26597 -12.13670 -11.94788 -11.75977 -11.69339 -11.52598 -11.33573 -11.20243 -10.68993 -9.84602 -9.72527 -9.46147 -9.40279 -8.29809 -8.22276 -6.47125 0.35528 0.43434 1.06198 1.36009 1.40888 1.56149 1.57127 2.24860 2.53884 2.76197 2.93118 3.16933 3.53823 3.75317 3.98016 3.99714 4.05771 4.11396 4.17942 4.21772 4.32294 4.39975 4.43405 4.50961 4.65281 4.70413 4.81368 4.84621 4.90113 4.96082 5.00343 5.01664 5.07537 5.11412 5.15745 5.18622 5.27067 5.29125 5.36744 5.55021 5.63923 5.66786 5.73686 5.97805 6.06005 6.09696 6.23516 6.57078 6.83946 6.94228 7.22628 8.35381 8.51969 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018424 B = 0.003099 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.363706 B = 9032.324351 C = 9926.286605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.200 3.800 3 H 0.081 0.919 4 N -0.727 5.727 5 C 0.398 3.602 6 C -0.365 4.365 7 C -0.030 4.030 8 C -0.345 4.345 9 C 0.259 3.741 10 C -0.471 4.471 11 H 0.086 0.914 12 C 0.025 3.975 13 N -0.752 5.752 14 Si 0.986 3.014 15 H -0.255 1.255 16 H -0.267 1.267 17 H -0.267 1.267 18 N -0.566 5.566 19 C -0.087 4.087 20 C -0.130 4.130 21 C -0.116 4.116 22 C -0.127 4.127 23 C -0.054 4.054 24 C -0.134 4.134 25 C -0.172 4.172 26 C -0.161 4.161 27 C -0.114 4.114 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.390 0.610 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.275 0.725 36 H 0.112 0.888 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 0.963 19.403 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.095 3.905 3 H 0.099 0.901 4 N -0.362 5.362 5 C 0.158 3.842 6 C -0.390 4.390 7 C -0.054 4.054 8 C -0.368 4.368 9 C 0.132 3.868 10 C -0.503 4.503 11 H 0.104 0.896 12 C -0.196 4.196 13 N -0.374 5.374 14 Si 0.806 3.194 15 H -0.179 1.179 16 H -0.192 1.192 17 H -0.192 1.192 18 N -0.289 5.289 19 C -0.088 4.088 20 C -0.148 4.148 21 C -0.134 4.134 22 C -0.145 4.145 23 C -0.054 4.054 24 C -0.152 4.152 25 C -0.209 4.209 26 C -0.198 4.198 27 C -0.133 4.133 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.225 0.775 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.134 0.866 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.112 0.888 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.312 0.067 19.672 19.716 hybrid contribution 0.060 0.112 -1.070 1.077 sum -1.251 0.179 18.602 18.645 Atomic orbital electron populations 1.22181 0.94420 1.02147 1.02310 1.19685 0.94038 0.95626 0.81138 0.90084 1.44485 1.73555 1.12032 1.06108 1.18937 0.89359 0.88670 0.87284 1.20966 1.23671 0.94720 0.99681 1.21013 0.93680 0.98610 0.92107 1.21685 1.19046 0.96655 0.99413 1.18684 0.88093 0.89523 0.90534 1.19951 1.38810 0.95395 0.96162 0.89623 1.26963 0.94136 0.98646 0.99897 1.70266 1.30722 1.10381 1.26033 0.85115 0.78316 0.78065 0.77879 1.17867 1.19215 1.19160 1.68180 1.25001 1.37273 0.98455 1.19923 0.99622 0.94168 0.95069 1.21041 1.00979 0.94100 0.98716 1.21328 0.98298 1.00879 0.92924 1.21274 1.00484 0.93508 0.99218 1.19328 0.98065 0.93623 0.94383 1.21069 1.06328 1.00097 0.87713 1.23168 0.96350 1.00762 1.00596 1.23082 0.95574 1.03894 0.97261 1.20923 0.99444 1.00354 0.92534 0.89839 0.93122 0.92938 0.77472 0.86250 0.85283 0.88034 0.91452 0.86954 0.84243 0.83998 0.86570 0.88067 0.87236 0.87109 0.88770 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 9.37 71.98 0.67 -3.71 16 2 C 0.20 6.45 2.46 44.25 0.11 6.56 16 3 H 0.08 2.62 6.31 -2.38 -0.02 2.61 16 4 N -0.73 -30.21 5.19 -328.01 -1.70 -31.91 16 5 C 0.40 19.97 7.63 133.42 1.02 20.99 16 6 C -0.36 -16.69 8.83 22.73 0.20 -16.49 16 7 C -0.03 -1.38 10.15 22.39 0.23 -1.15 16 8 C -0.34 -18.05 9.83 22.87 0.22 -17.82 16 9 C 0.26 15.14 6.55 40.18 0.26 15.40 16 10 C -0.47 -26.78 9.14 23.46 0.21 -26.57 16 11 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 12 C 0.03 1.33 5.50 85.29 0.47 1.80 16 13 N -0.75 -41.67 11.46 21.84 0.25 -41.42 16 14 Si 0.99 39.57 29.56 68.60 2.03 41.60 16 15 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 16 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 17 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 18 N -0.57 -32.80 7.89 -186.59 -1.47 -34.28 16 19 C -0.09 -2.49 4.95 -19.87 -0.10 -2.59 16 20 C -0.13 -3.65 9.06 22.27 0.20 -3.45 16 21 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 22 C -0.13 -2.67 9.30 22.27 0.21 -2.46 16 23 C -0.05 -1.18 5.61 -19.86 -0.11 -1.29 16 24 C -0.13 -2.24 6.04 -11.54 -0.07 -2.31 16 25 C -0.17 -2.24 9.86 30.59 0.30 -1.94 16 26 C -0.16 -2.10 10.16 30.59 0.31 -1.79 16 27 C -0.11 -2.84 9.36 22.27 0.21 -2.63 16 28 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.05 1.62 7.62 -2.39 -0.02 1.60 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.39 16.73 6.99 -92.71 -0.65 16.08 16 32 H 0.12 4.69 6.03 -2.91 -0.02 4.67 16 33 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 34 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 35 H 0.27 13.75 8.29 -92.71 -0.77 12.98 16 36 H 0.11 3.33 6.92 -2.91 -0.02 3.31 16 37 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 38 H 0.14 2.26 6.02 -2.91 -0.02 2.24 16 39 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.10 1.25 6.18 -2.39 -0.01 1.23 16 41 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.13 2.89 8.04 -2.91 -0.02 2.87 16 Total: -1.00 -67.08 362.50 4.05 -63.03 By element: Atomic # 1 Polarization: 44.57 SS G_CDS: 0.37 Total: 44.94 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 4.57 Total: -41.95 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -2.92 Total: -107.61 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -67.08 4.05 -63.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347840357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.373 kcal (2) G-P(sol) polarization free energy of solvation -67.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds