Wall clock time and date at job start Tue Mar 31 2020 10:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00079 * 2 1 4 4 H 1.48507 * 109.46864 * 264.53590 * 3 2 1 5 5 H 1.48500 * 109.47400 * 24.53549 * 3 2 1 6 6 H 1.48498 * 109.47164 * 144.53745 * 3 2 1 7 7 C 1.38811 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00023 * 337.61195 * 7 2 1 9 9 N 1.36934 * 119.99872 * 157.61800 * 7 2 1 10 10 C 1.47422 * 125.65189 * 341.47445 * 9 7 2 11 11 C 1.54906 * 104.83103 * 204.16920 * 10 9 7 12 12 C 1.55154 * 101.58535 * 322.98533 * 11 10 9 13 13 O 1.42901 * 110.87151 * 277.07312 * 12 11 10 14 14 C 1.52996 * 110.72173 * 153.86887 * 12 11 10 15 15 N 1.46509 * 109.46929 * 190.02993 * 14 12 11 16 16 C 1.34779 * 119.99543 * 180.02562 * 15 14 12 17 17 O 1.21282 * 120.00204 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99609 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.47014 * 179.97438 * 18 16 15 20 20 H 1.09001 * 115.56023 * 29.31391 * 19 18 16 21 21 C 1.52996 * 117.50218 * 243.62157 * 19 18 16 22 22 C 1.52994 * 60.00060 * 252.51096 * 21 19 18 23 23 H 1.09004 * 117.50050 * 107.51018 * 22 21 19 24 24 C 1.52993 * 117.50289 * 252.50745 * 22 21 19 25 25 C 1.52998 * 117.52212 * 179.89356 * 24 22 21 26 26 C 1.52998 * 60.00108 * 107.48253 * 25 24 22 27 27 C 1.47025 * 125.64696 * 161.51868 * 9 7 2 28 28 H 0.97006 * 119.99940 * 0.02562 * 1 2 3 29 29 H 1.08997 * 110.36502 * 323.00108 * 10 9 7 30 30 H 1.08991 * 110.36625 * 85.21693 * 10 9 7 31 31 H 1.09004 * 111.00180 * 204.91498 * 11 10 9 32 32 H 1.09002 * 111.00987 * 81.06444 * 11 10 9 33 33 H 0.96706 * 113.99655 * 177.45116 * 13 12 11 34 34 H 1.08996 * 109.47162 * 70.02986 * 14 12 11 35 35 H 1.09003 * 109.47001 * 310.02217 * 14 12 11 36 36 H 0.96993 * 119.99761 * 359.97438 * 15 14 12 37 37 H 1.09002 * 109.46734 * 59.99420 * 18 16 15 38 38 H 1.08996 * 109.46937 * 299.99981 * 18 16 15 39 39 H 1.08994 * 117.49944 * 145.01884 * 21 19 18 40 40 H 1.09008 * 117.51689 * 359.97438 * 21 19 18 41 41 H 1.09006 * 115.54593 * 34.19157 * 24 22 21 42 42 H 1.09009 * 117.49986 * 214.97374 * 25 24 22 43 43 H 1.09001 * 117.49758 * 359.97438 * 25 24 22 44 44 H 1.08997 * 117.49730 * 252.50650 * 26 25 24 45 45 H 1.09000 * 117.49684 * 107.48794 * 26 25 24 46 46 H 1.09000 * 109.88422 * 59.47883 * 27 9 7 47 47 H 1.08998 * 109.88448 * 298.32053 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6132 1.9797 -1.3938 5 1 1.3948 2.6833 0.5814 6 1 3.4853 1.4762 0.8123 7 6 2.0102 -1.2021 0.0005 8 1 1.5313 -2.1021 0.3572 9 7 3.3022 -1.2470 -0.4510 10 6 3.9503 -0.2334 -1.3030 11 6 5.0948 -0.9916 -2.0205 12 6 5.5797 -1.9532 -0.9037 13 8 6.4903 -1.2923 -0.0227 14 6 6.2241 -3.2028 -1.5072 15 7 6.4534 -4.1923 -0.4515 16 6 7.0162 -5.3797 -0.7516 17 8 7.3324 -5.6290 -1.8956 18 6 7.2527 -6.3974 0.3345 19 6 7.8970 -7.6470 -0.2691 20 1 8.5166 -7.4779 -1.1498 21 6 7.1026 -8.9529 -0.2043 22 6 8.3255 -8.7561 0.6938 23 1 8.1484 -8.5959 1.7573 24 6 9.5908 -9.5430 0.3468 25 6 10.8148 -9.3446 1.2431 26 6 10.0206 -10.6506 1.3109 27 6 4.2725 -2.3145 -0.1672 28 1 -0.4850 0.8401 -0.0004 29 1 3.2410 0.1598 -2.0312 30 1 4.3529 0.5745 -0.6920 31 1 5.8893 -0.3078 -2.3194 32 1 4.7172 -1.5481 -2.8784 33 1 6.7916 -1.8403 0.7149 34 1 7.1753 -2.9350 -1.9670 35 1 5.5612 -3.6246 -2.2627 36 1 6.2009 -3.9927 0.4635 37 1 6.3015 -6.6654 0.7945 38 1 7.9154 -5.9752 1.0899 39 1 7.1994 -9.6430 -1.0424 40 1 6.1209 -8.9223 0.2687 41 1 9.7667 -9.7052 -0.7167 42 1 11.7960 -9.3762 0.7694 43 1 10.7189 -8.6529 2.0801 44 1 9.4022 -10.8183 2.1927 45 1 10.4793 -11.5414 0.8817 46 1 3.8922 -3.2681 -0.5332 47 1 4.4556 -2.3734 0.9057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754756214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:12 Heat of formation + Delta-G solvation = -14.023822 kcal Electronic energy + Delta-G solvation = -25252.585432 eV Core-core repulsion = 21630.546345 eV Total energy + Delta-G solvation = -3622.039088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.18105 -39.08546 -38.38204 -35.85998 -35.39079 -34.28191 -32.27134 -30.59996 -29.65911 -28.30671 -25.99557 -23.99085 -23.46075 -22.70769 -21.64452 -21.07377 -20.41191 -20.12113 -20.06192 -17.68680 -17.08722 -16.42559 -16.11138 -15.79892 -15.60174 -15.35383 -15.01237 -14.52078 -14.27600 -13.95813 -13.86456 -13.51481 -13.43315 -13.04405 -12.85134 -12.29152 -12.15190 -11.99922 -11.88038 -11.83725 -11.68140 -11.51298 -11.45464 -11.21216 -11.03777 -10.96564 -10.78750 -10.22118 -10.09884 -10.09790 -9.95966 -9.75007 -9.60484 -9.44667 -9.16504 -8.72225 -7.09414 -5.97852 -3.29131 2.56245 2.96008 3.22964 3.34497 3.48264 3.52756 3.84389 4.10314 4.24335 4.42771 4.48893 4.52856 4.56728 4.63219 4.77155 4.90224 4.94008 4.95254 4.98249 5.05186 5.11790 5.20060 5.28990 5.31617 5.37784 5.42877 5.52339 5.59380 5.62180 5.76091 5.77785 5.80132 5.84300 5.94376 6.03861 6.08835 6.15010 6.26106 6.34919 6.37566 6.60273 6.72272 7.35301 7.64651 7.73565 8.12392 8.26993 8.78336 9.64943 10.12496 11.17843 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.028614 B = 0.002411 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.293214 B =11609.610124 C =11973.383081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.275 1.275 7 C -0.245 4.245 8 H 0.092 0.908 9 N -0.605 5.605 10 C 0.113 3.887 11 C -0.114 4.114 12 C 0.104 3.896 13 O -0.545 6.545 14 C 0.105 3.895 15 N -0.730 5.730 16 C 0.516 3.484 17 O -0.539 6.539 18 C -0.112 4.112 19 C -0.129 4.129 20 H 0.119 0.881 21 C -0.169 4.169 22 C -0.121 4.121 23 H 0.104 0.896 24 C -0.122 4.122 25 C -0.178 4.178 26 C -0.179 4.179 27 C 0.115 3.885 28 H 0.264 0.736 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.369 0.631 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.400 0.600 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.041 0.959 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.733 -16.598 2.173 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.201 1.201 7 C -0.372 4.372 8 H 0.109 0.891 9 N -0.332 5.332 10 C -0.012 4.012 11 C -0.153 4.153 12 C 0.062 3.938 13 O -0.350 6.350 14 C -0.019 4.019 15 N -0.383 5.383 16 C 0.303 3.697 17 O -0.416 6.416 18 C -0.152 4.152 19 C -0.148 4.148 20 H 0.137 0.863 21 C -0.206 4.206 22 C -0.140 4.140 23 H 0.122 0.878 24 C -0.140 4.140 25 C -0.215 4.215 26 C -0.216 4.216 27 C -0.011 4.011 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.216 0.784 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.234 0.766 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.059 0.941 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 19.600 -16.186 0.958 25.437 hybrid contribution 0.298 0.652 0.987 1.219 sum 19.897 -15.535 1.945 25.318 Atomic orbital electron populations 1.69844 1.05549 1.26677 1.52977 1.24995 0.95172 0.97481 0.99935 0.86974 0.79201 0.84531 0.77935 1.21150 1.23027 1.20059 1.18605 0.84158 0.95475 1.38972 0.89086 1.44684 1.09608 1.22064 1.56805 1.21969 0.93208 0.92672 0.93313 1.22746 0.98610 0.98029 0.95886 1.22518 0.88694 0.90972 0.91573 1.86604 1.64149 1.43223 1.40984 1.22023 1.01416 0.87803 0.90677 1.46021 1.63558 1.16482 1.12210 1.20550 0.76784 0.82196 0.90178 1.90693 1.50919 1.78130 1.21855 1.21235 1.02666 0.94012 0.97255 1.22107 1.03112 0.88277 1.01287 0.86339 1.23129 0.95519 0.99778 1.02151 1.21860 0.94226 1.01138 0.96736 0.87771 1.21726 0.94143 1.01224 0.96926 1.22942 0.95776 1.00095 1.02710 1.22941 1.03887 0.92788 1.01937 1.21992 0.88654 0.93460 0.97014 0.92647 0.92071 0.95005 0.90328 0.89531 0.78443 0.90631 0.90162 0.76576 0.88555 0.88444 0.88652 0.88585 0.87792 0.88839 0.88715 0.88752 0.88870 0.94066 0.94914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.89 13.97 55.49 0.78 -27.11 16 2 C 0.02 0.67 5.43 -17.43 -0.09 0.58 16 3 Si 0.88 22.77 24.27 -169.99 -4.13 18.65 16 4 H -0.28 -7.05 6.49 56.52 0.37 -6.68 16 5 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 6 H -0.27 -7.10 6.66 56.52 0.38 -6.72 16 7 C -0.25 -6.91 10.57 -15.06 -0.16 -7.06 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.60 -14.42 3.21 -170.08 -0.55 -14.97 16 10 C 0.11 2.48 4.69 -2.53 -0.01 2.47 16 11 C -0.11 -1.91 6.26 -24.59 -0.15 -2.07 16 12 C 0.10 1.59 0.93 -88.79 -0.08 1.50 16 13 O -0.54 -8.09 13.10 -35.23 -0.46 -8.55 16 14 C 0.10 1.37 4.80 -4.04 -0.02 1.35 16 15 N -0.73 -7.94 5.13 -60.29 -0.31 -8.25 16 16 C 0.52 6.05 7.83 -10.98 -0.09 5.97 16 17 O -0.54 -8.44 15.56 5.56 0.09 -8.36 16 18 C -0.11 -0.92 5.98 -27.88 -0.17 -1.08 16 19 C -0.13 -1.16 5.13 -90.62 -0.47 -1.63 16 20 H 0.12 1.31 7.30 -51.93 -0.38 0.93 16 21 C -0.17 -1.38 9.90 -26.74 -0.26 -1.64 16 22 C -0.12 -0.91 5.57 -90.63 -0.50 -1.42 16 23 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 24 C -0.12 -0.89 5.85 -90.62 -0.53 -1.42 16 25 C -0.18 -1.16 10.25 -26.73 -0.27 -1.44 16 26 C -0.18 -1.13 10.25 -26.73 -0.27 -1.40 16 27 C 0.11 2.12 5.76 -3.06 -0.02 2.10 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.06 1.41 6.64 -51.93 -0.34 1.07 16 30 H 0.03 0.75 5.57 -51.93 -0.29 0.46 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.09 1.34 7.96 -51.93 -0.41 0.92 16 33 H 0.37 3.91 8.44 45.56 0.38 4.30 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16 36 H 0.40 3.47 7.47 -40.82 -0.30 3.17 16 37 H 0.10 0.67 7.87 -51.93 -0.41 0.26 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.72 8.03 -51.92 -0.42 0.31 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 0.56 8.14 -51.92 -0.42 0.13 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.04 0.75 7.82 -51.93 -0.41 0.35 16 47 H 0.03 0.58 8.07 -51.93 -0.42 0.17 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -34.36 375.70 -9.28 -43.64 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.26 Total: 4.48 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -3.10 Total: -5.19 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.08 Total: -50.33 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.38 Total: -16.91 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.13 Total: 18.65 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.36 -9.28 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754756214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.617 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds