Wall clock time and date at job start Tue Mar 31 2020 10:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00079 * 2 1 4 4 H 1.48507 * 109.46864 * 264.53590 * 3 2 1 5 5 H 1.48500 * 109.47400 * 24.53549 * 3 2 1 6 6 H 1.48498 * 109.47164 * 144.53745 * 3 2 1 7 7 C 1.38811 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00023 * 337.61195 * 7 2 1 9 9 N 1.36934 * 119.99872 * 157.61800 * 7 2 1 10 10 C 1.47422 * 125.65189 * 341.47445 * 9 7 2 11 11 C 1.54906 * 104.83103 * 204.16920 * 10 9 7 12 12 C 1.55154 * 101.58535 * 322.98533 * 11 10 9 13 13 O 1.42901 * 110.87151 * 277.07312 * 12 11 10 14 14 C 1.52996 * 110.72173 * 153.86887 * 12 11 10 15 15 N 1.46509 * 109.46929 * 190.02993 * 14 12 11 16 16 C 1.34779 * 119.99543 * 180.02562 * 15 14 12 17 17 O 1.21282 * 120.00204 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99609 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.47014 * 179.97438 * 18 16 15 20 20 H 1.09001 * 115.56023 * 29.31391 * 19 18 16 21 21 C 1.52996 * 117.50218 * 243.62157 * 19 18 16 22 22 C 1.52994 * 60.00060 * 252.51096 * 21 19 18 23 23 H 1.09004 * 117.50050 * 107.51018 * 22 21 19 24 24 C 1.52993 * 117.50289 * 252.50745 * 22 21 19 25 25 C 1.52998 * 117.52212 * 179.89356 * 24 22 21 26 26 C 1.52998 * 60.00108 * 107.48253 * 25 24 22 27 27 C 1.47025 * 125.64696 * 161.51868 * 9 7 2 28 28 H 0.97006 * 119.99940 * 0.02562 * 1 2 3 29 29 H 1.08997 * 110.36502 * 323.00108 * 10 9 7 30 30 H 1.08991 * 110.36625 * 85.21693 * 10 9 7 31 31 H 1.09004 * 111.00180 * 204.91498 * 11 10 9 32 32 H 1.09002 * 111.00987 * 81.06444 * 11 10 9 33 33 H 0.96706 * 113.99655 * 177.45116 * 13 12 11 34 34 H 1.08996 * 109.47162 * 70.02986 * 14 12 11 35 35 H 1.09003 * 109.47001 * 310.02217 * 14 12 11 36 36 H 0.96993 * 119.99761 * 359.97438 * 15 14 12 37 37 H 1.09002 * 109.46734 * 59.99420 * 18 16 15 38 38 H 1.08996 * 109.46937 * 299.99981 * 18 16 15 39 39 H 1.08994 * 117.49944 * 145.01884 * 21 19 18 40 40 H 1.09008 * 117.51689 * 359.97438 * 21 19 18 41 41 H 1.09006 * 115.54593 * 34.19157 * 24 22 21 42 42 H 1.09009 * 117.49986 * 214.97374 * 25 24 22 43 43 H 1.09001 * 117.49758 * 359.97438 * 25 24 22 44 44 H 1.08997 * 117.49730 * 252.50650 * 26 25 24 45 45 H 1.09000 * 117.49684 * 107.48794 * 26 25 24 46 46 H 1.09000 * 109.88422 * 59.47883 * 27 9 7 47 47 H 1.08998 * 109.88448 * 298.32053 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6132 1.9797 -1.3938 5 1 1.3948 2.6833 0.5814 6 1 3.4853 1.4762 0.8123 7 6 2.0102 -1.2021 0.0005 8 1 1.5313 -2.1021 0.3572 9 7 3.3022 -1.2470 -0.4510 10 6 3.9503 -0.2334 -1.3030 11 6 5.0948 -0.9916 -2.0205 12 6 5.5797 -1.9532 -0.9037 13 8 6.4903 -1.2923 -0.0227 14 6 6.2241 -3.2028 -1.5072 15 7 6.4534 -4.1923 -0.4515 16 6 7.0162 -5.3797 -0.7516 17 8 7.3324 -5.6290 -1.8956 18 6 7.2527 -6.3974 0.3345 19 6 7.8970 -7.6470 -0.2691 20 1 8.5166 -7.4779 -1.1498 21 6 7.1026 -8.9529 -0.2043 22 6 8.3255 -8.7561 0.6938 23 1 8.1484 -8.5959 1.7573 24 6 9.5908 -9.5430 0.3468 25 6 10.8148 -9.3446 1.2431 26 6 10.0206 -10.6506 1.3109 27 6 4.2725 -2.3145 -0.1672 28 1 -0.4850 0.8401 -0.0004 29 1 3.2410 0.1598 -2.0312 30 1 4.3529 0.5745 -0.6920 31 1 5.8893 -0.3078 -2.3194 32 1 4.7172 -1.5481 -2.8784 33 1 6.7916 -1.8403 0.7149 34 1 7.1753 -2.9350 -1.9670 35 1 5.5612 -3.6246 -2.2627 36 1 6.2009 -3.9927 0.4635 37 1 6.3015 -6.6654 0.7945 38 1 7.9154 -5.9752 1.0899 39 1 7.1994 -9.6430 -1.0424 40 1 6.1209 -8.9223 0.2687 41 1 9.7667 -9.7052 -0.7167 42 1 11.7960 -9.3762 0.7694 43 1 10.7189 -8.6529 2.0801 44 1 9.4022 -10.8183 2.1927 45 1 10.4793 -11.5414 0.8817 46 1 3.8922 -3.2681 -0.5332 47 1 4.4556 -2.3734 0.9057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754756214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:11 Heat of formation + Delta-G solvation = -38.993504 kcal Electronic energy + Delta-G solvation = -25253.668199 eV Core-core repulsion = 21630.546345 eV Total energy + Delta-G solvation = -3623.121854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20052 -40.17201 -39.19251 -36.96913 -36.39782 -35.32202 -34.24306 -31.94831 -30.89318 -29.60099 -27.52866 -25.10049 -24.48559 -23.22000 -22.97297 -22.25666 -21.37143 -21.02290 -20.98502 -18.98837 -18.66582 -17.55656 -17.27544 -16.94486 -16.57539 -16.41147 -15.97588 -15.93814 -15.65282 -15.30486 -14.88384 -14.61593 -14.41555 -14.28079 -13.95318 -13.84603 -13.51750 -13.31943 -13.05368 -12.94662 -12.74401 -12.55952 -12.35940 -12.19658 -12.09192 -12.05798 -12.05028 -11.84200 -11.50037 -11.47355 -11.06045 -10.91562 -10.83618 -10.67847 -10.22930 -10.13896 -9.09004 -8.20536 -5.47175 1.29257 1.38049 1.47191 1.66833 2.10156 2.39271 2.62279 2.96314 3.15166 3.18811 3.28348 3.49864 3.58186 3.72041 3.75797 3.78326 3.91369 4.02648 4.18016 4.32505 4.33527 4.36561 4.37524 4.40594 4.56119 4.65436 4.72561 4.74617 4.75814 4.82114 4.83244 4.84439 4.93042 4.97115 5.05373 5.06694 5.14325 5.24064 5.29740 5.30399 5.37758 5.46736 5.63793 6.07374 6.50272 6.71908 6.75955 7.24547 7.50568 8.06774 8.98891 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.028614 B = 0.002411 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.293214 B =11609.610124 C =11973.383081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.035 4.035 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.307 1.307 6 H -0.273 1.273 7 C -0.234 4.234 8 H 0.063 0.937 9 N -0.625 5.625 10 C 0.105 3.895 11 C -0.109 4.109 12 C 0.125 3.875 13 O -0.554 6.554 14 C 0.118 3.882 15 N -0.721 5.721 16 C 0.514 3.486 17 O -0.583 6.583 18 C -0.103 4.103 19 C -0.142 4.142 20 H 0.092 0.908 21 C -0.175 4.175 22 C -0.105 4.105 23 H 0.119 0.881 24 C -0.139 4.139 25 C -0.177 4.177 26 C -0.173 4.173 27 C 0.110 3.890 28 H 0.263 0.737 29 H 0.042 0.958 30 H 0.023 0.977 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.389 0.611 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.413 0.587 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.044 0.956 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.134 -17.054 3.109 28.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.230 4.230 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.236 1.236 6 H -0.199 1.199 7 C -0.363 4.363 8 H 0.081 0.919 9 N -0.351 5.351 10 C -0.019 4.019 11 C -0.147 4.147 12 C 0.083 3.917 13 O -0.361 6.361 14 C -0.007 4.007 15 N -0.375 5.375 16 C 0.303 3.697 17 O -0.463 6.463 18 C -0.142 4.142 19 C -0.160 4.160 20 H 0.110 0.890 21 C -0.212 4.212 22 C -0.123 4.123 23 H 0.137 0.863 24 C -0.157 4.157 25 C -0.214 4.214 26 C -0.210 4.210 27 C -0.015 4.015 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.239 0.761 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.250 0.750 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.062 0.938 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 22.050 -16.660 1.924 27.703 hybrid contribution -0.414 0.672 0.697 1.053 sum 21.636 -15.988 2.621 27.030 Atomic orbital electron populations 1.69960 1.07060 1.27261 1.55727 1.25600 0.95782 1.00603 1.01010 0.85975 0.77618 0.80555 0.78455 1.19716 1.23583 1.19905 1.18580 0.86125 0.94382 1.37197 0.91873 1.44797 1.09283 1.23744 1.57321 1.22023 0.94324 0.92739 0.92856 1.22740 0.97315 0.98378 0.96288 1.22180 0.87441 0.91338 0.90738 1.86573 1.63619 1.44108 1.41839 1.21747 1.01065 0.87102 0.90809 1.45924 1.63150 1.15959 1.12422 1.21173 0.75689 0.82515 0.90335 1.90683 1.52760 1.78943 1.23896 1.21268 1.04104 0.92512 0.96352 1.22016 1.03620 0.89157 1.01257 0.88961 1.23195 0.96326 0.99264 1.02444 1.21886 0.93748 0.99616 0.97051 0.86294 1.21756 0.94733 1.02423 0.96796 1.23017 0.95571 1.00343 1.02498 1.23012 1.03572 0.92800 1.01633 1.22214 0.89171 0.91872 0.98251 0.92826 0.93946 0.95981 0.88087 0.88251 0.76135 0.90182 0.91178 0.75038 0.86702 0.85793 0.89346 0.87698 0.88760 0.88525 0.88104 0.88094 0.88328 0.93794 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.11 13.97 21.65 0.30 -59.81 16 2 C -0.04 -2.08 5.43 84.86 0.46 -1.61 16 3 Si 0.94 47.55 24.27 68.60 1.66 49.22 16 4 H -0.27 -12.89 6.49 99.48 0.65 -12.24 16 5 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 6 H -0.27 -13.52 6.66 99.48 0.66 -12.86 16 7 C -0.23 -13.35 10.57 84.03 0.89 -12.46 16 8 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 9 N -0.62 -29.26 3.21 -692.01 -2.22 -31.48 16 10 C 0.11 4.44 4.69 86.85 0.41 4.85 16 11 C -0.11 -3.36 6.26 31.98 0.20 -3.16 16 12 C 0.12 3.45 0.93 -9.61 -0.01 3.44 16 13 O -0.55 -14.41 13.10 -148.98 -1.95 -16.36 16 14 C 0.12 2.76 4.80 86.38 0.41 3.18 16 15 N -0.72 -13.68 5.13 -463.04 -2.38 -16.06 16 16 C 0.51 11.04 7.83 87.66 0.69 11.72 16 17 O -0.58 -17.81 15.56 -3.03 -0.05 -17.86 16 18 C -0.10 -1.41 5.98 29.85 0.18 -1.23 16 19 C -0.14 -2.37 5.13 -10.80 -0.06 -2.43 16 20 H 0.09 2.06 7.30 -2.39 -0.02 2.04 16 21 C -0.18 -2.66 9.90 30.59 0.30 -2.36 16 22 C -0.11 -1.38 5.57 -10.80 -0.06 -1.44 16 23 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 24 C -0.14 -1.86 5.85 -10.80 -0.06 -1.92 16 25 C -0.18 -2.00 10.25 30.59 0.31 -1.69 16 26 C -0.17 -1.87 10.25 30.59 0.31 -1.56 16 27 C 0.11 3.83 5.76 86.73 0.50 4.33 16 28 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 29 H 0.04 1.93 6.64 -2.39 -0.02 1.91 16 30 H 0.02 1.00 5.57 -2.39 -0.01 0.98 16 31 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 32 H 0.10 2.82 7.96 -2.39 -0.02 2.80 16 33 H 0.39 6.66 8.44 -74.05 -0.62 6.04 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 1.84 8.03 -2.39 -0.02 1.82 16 36 H 0.41 5.72 7.47 -92.71 -0.69 5.03 16 37 H 0.11 1.20 7.87 -2.39 -0.02 1.18 16 38 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.38 8.03 -2.38 -0.02 1.36 16 41 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 46 H 0.04 1.53 7.82 -2.39 -0.02 1.51 16 47 H 0.04 1.47 8.07 -2.39 -0.02 1.45 16 Total: -1.00 -75.65 375.70 -0.60 -76.25 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -0.45 Total: 18.45 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 4.48 Total: -2.35 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -4.29 Total: -107.34 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -2.00 Total: -34.23 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.66 Total: 49.22 kcal Total: -75.65 -0.60 -76.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754756214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.256 kcal (2) G-P(sol) polarization free energy of solvation -75.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds