Wall clock time and date at job start Tue Mar 31 2020 10:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00162 * 2 1 4 4 H 1.48495 * 109.47431 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46972 * 299.99409 * 3 2 1 6 6 H 1.48507 * 109.47173 * 59.99395 * 3 2 1 7 7 C 1.38813 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99951 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00402 * 0.02562 * 7 2 1 10 10 C 1.46663 * 125.34001 * 180.02562 * 9 7 2 11 11 C 1.53727 * 107.94540 * 179.45296 * 10 9 7 12 12 H 1.09000 * 113.05641 * 219.99528 * 11 10 9 13 13 C 1.53688 * 109.34502 * 93.74050 * 11 10 9 14 14 N 1.46636 * 108.01202 * 232.44709 * 13 11 10 15 15 C 1.34776 * 125.32937 * 179.17995 * 14 13 11 16 16 O 1.21287 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00020 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.47422 * 180.02562 * 17 15 14 19 19 O 1.42899 * 109.47365 * 180.02562 * 18 17 15 20 20 C 1.42906 * 113.99975 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.46801 * 179.97438 * 20 19 18 22 22 C 1.53001 * 117.49757 * 243.74182 * 21 20 19 23 23 C 1.53009 * 117.49139 * 175.08744 * 21 20 19 24 24 C 1.46742 * 109.34326 * 359.16592 * 14 13 11 25 25 C 1.53934 * 106.71885 * 18.33846 * 24 14 13 26 26 H 1.09008 * 113.01089 * 209.16974 * 25 24 14 27 27 C 1.46774 * 125.33569 * 359.97438 * 9 7 2 28 28 H 0.97003 * 119.99806 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.77731 * 59.82371 * 10 9 7 30 30 H 1.09009 * 109.77109 * 299.06714 * 10 9 7 31 31 H 1.09002 * 109.75712 * 352.09025 * 13 11 10 32 32 H 1.09001 * 109.75852 * 112.79979 * 13 11 10 33 33 H 1.09004 * 109.47458 * 300.00704 * 17 15 14 34 34 H 1.08999 * 109.47362 * 60.00579 * 17 15 14 35 35 H 1.09004 * 109.46865 * 300.00438 * 18 17 15 36 36 H 1.09004 * 109.47302 * 59.99874 * 18 17 15 37 37 H 1.09001 * 109.46845 * 299.99998 * 20 19 18 38 38 H 1.09002 * 109.46911 * 59.99604 * 20 19 18 39 39 H 1.08996 * 115.55196 * 29.42392 * 21 20 19 40 40 H 1.09000 * 117.49627 * 0.02562 * 22 21 20 41 41 H 1.09000 * 117.49335 * 145.01992 * 22 21 20 42 42 H 1.09006 * 117.49384 * 214.97630 * 23 21 20 43 43 H 1.08994 * 117.50142 * 0.02562 * 23 21 20 44 44 H 1.09005 * 110.00507 * 259.02990 * 24 14 13 45 45 H 1.08995 * 110.01348 * 137.65823 * 24 14 13 46 46 H 1.08999 * 110.02523 * 79.22951 * 27 9 7 47 47 H 1.09003 * 110.02832 * 317.81270 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.9375 -3.7210 0.0016 11 6 0.8061 -4.7616 0.0152 12 1 1.0171 -5.6132 0.6619 13 6 0.4840 -5.1823 -1.4275 14 7 -0.9589 -5.0228 -1.6349 15 6 -1.6139 -5.2786 -2.7846 16 8 -1.0038 -5.6754 -3.7549 17 6 -3.1046 -5.0727 -2.8644 18 6 -3.5950 -5.4335 -4.2680 19 8 -5.0085 -5.2376 -4.3438 20 6 -5.5706 -5.5473 -5.6207 21 6 -7.0805 -5.3028 -5.5860 22 6 -7.9967 -6.5116 -5.7867 23 6 -7.8530 -5.4672 -6.8965 24 6 -1.5779 -4.5415 -0.3946 25 6 -0.4447 -3.9582 0.4686 26 1 -0.6410 -4.0349 1.5381 27 6 -0.1359 -2.5246 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 2.5592 -3.8406 0.8888 30 1 2.5449 -3.8485 -0.8945 31 1 1.0291 -4.5481 -2.1267 32 1 0.7652 -6.2244 -1.5790 33 1 -3.5993 -5.7106 -2.1319 34 1 -3.3390 -4.0291 -2.6544 35 1 -3.1004 -4.7959 -5.0008 36 1 -3.3607 -6.4772 -4.4777 37 1 -5.1166 -4.9119 -6.3812 38 1 -5.3775 -6.5933 -5.8586 39 1 -7.4153 -4.5261 -4.8985 40 1 -7.5236 -7.4811 -5.9430 41 1 -8.9344 -6.5300 -5.2312 42 1 -8.6963 -4.7990 -7.0708 43 1 -7.2855 -5.7500 -7.7831 44 1 -2.0570 -5.3691 0.1286 45 1 -2.3115 -3.7674 -0.6198 46 1 -0.5253 -2.3688 -1.0055 47 1 -0.5782 -1.8038 0.6883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754842016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:05 Heat of formation + Delta-G solvation = -29.060047 kcal Electronic energy + Delta-G solvation = -25492.803965 eV Core-core repulsion = 21870.112858 eV Total energy + Delta-G solvation = -3622.691107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.24266 -38.76248 -38.13733 -36.71575 -34.97373 -32.48761 -31.65245 -30.14699 -29.55730 -27.24956 -25.62526 -25.56537 -23.70303 -22.71726 -22.35478 -20.94017 -20.17739 -19.43716 -18.94580 -17.50562 -16.85476 -16.54154 -16.46229 -15.80605 -15.49997 -15.05782 -14.87551 -14.47072 -14.25108 -13.69962 -13.49636 -13.47372 -13.26032 -12.78125 -12.59431 -12.07684 -11.91132 -11.84439 -11.70643 -11.67281 -11.54688 -11.37941 -11.20093 -10.97125 -10.83274 -10.75337 -10.46916 -10.41778 -10.12672 -10.10349 -9.84386 -9.71474 -9.65093 -9.55546 -8.65447 -8.35828 -6.86021 -5.71013 -3.09588 2.78414 2.94316 3.38326 3.40645 3.44172 3.46415 3.70386 4.46672 4.48513 4.57019 4.61859 4.74260 4.83550 4.96123 4.97763 5.02493 5.16672 5.26555 5.28396 5.30239 5.38574 5.43404 5.47979 5.49755 5.54667 5.63287 5.70740 5.71032 5.76251 5.78158 5.83095 5.91453 6.05415 6.19101 6.22254 6.30561 6.48464 6.53047 6.68328 6.83960 7.05225 7.47717 7.60574 7.73449 7.79559 8.29494 8.31637 9.19903 9.80427 10.43446 11.35513 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.002727 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.253081 B =10265.754830 C =11306.510324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.110 4.110 12 H 0.089 0.911 13 C 0.120 3.880 14 N -0.605 5.605 15 C 0.533 3.467 16 O -0.552 6.552 17 C -0.135 4.135 18 C 0.080 3.920 19 O -0.388 6.388 20 C 0.095 3.905 21 C -0.152 4.152 22 C -0.178 4.178 23 C -0.175 4.175 24 C 0.109 3.891 25 C -0.123 4.123 26 H 0.095 0.905 27 C 0.171 3.829 28 H 0.251 0.749 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.019 0.981 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.525 -13.491 -5.909 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.018 3.982 11 C -0.129 4.129 12 H 0.108 0.892 13 C -0.002 4.002 14 N -0.337 5.337 15 C 0.321 3.679 16 O -0.431 6.431 17 C -0.174 4.174 18 C 0.003 3.997 19 O -0.307 6.307 20 C 0.018 3.982 21 C -0.171 4.171 22 C -0.215 4.215 23 C -0.212 4.212 24 C -0.014 4.014 25 C -0.143 4.143 26 H 0.114 0.886 27 C 0.046 3.954 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.037 0.963 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.370 -13.423 -6.348 19.326 hybrid contribution 0.590 0.814 -0.182 1.022 sum -11.780 -12.609 -6.530 18.450 Atomic orbital electron populations 1.69869 1.04869 1.24774 1.57519 1.24792 0.95766 0.97751 1.02266 0.86003 0.78694 0.83589 0.77238 1.20517 1.21763 1.21715 1.19112 0.90570 0.82341 1.43236 0.90351 1.44249 1.01690 0.99888 1.86991 1.21140 0.93247 0.85545 0.98225 1.22762 0.97367 0.98175 0.94618 0.89235 1.21870 0.80767 1.00477 0.97081 1.48172 1.09059 1.65019 1.11494 1.19948 0.89114 0.77394 0.81412 1.90688 1.69635 1.47344 1.35445 1.21427 0.92221 1.05300 0.98490 1.22109 0.80400 1.00757 0.96403 1.87797 1.21541 1.88888 1.32521 1.21968 0.91475 0.99116 0.85622 1.22158 0.92209 1.01684 1.01006 1.23086 1.01661 0.94178 1.02617 1.22990 1.02697 1.02938 0.92598 1.22019 0.96711 0.98095 0.84576 1.23312 0.92484 0.99472 0.99006 0.88649 1.21470 0.84828 0.89620 0.99514 0.93784 0.95683 0.95684 0.90909 0.92185 0.88208 0.87726 0.92314 0.92553 0.92757 0.93200 0.86713 0.88696 0.88605 0.88372 0.88659 0.92035 0.90327 0.96325 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 10.16 55.49 0.56 -25.88 16 2 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.22 -6.18 10.25 -15.06 -0.15 -6.34 16 8 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.60 -15.05 3.38 -171.86 -0.58 -15.63 16 10 C 0.14 2.92 6.62 -3.58 -0.02 2.90 16 11 C -0.11 -1.80 4.02 -88.60 -0.36 -2.16 16 12 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 13 C 0.12 2.03 6.22 -3.61 -0.02 2.01 16 14 N -0.60 -9.83 3.30 -172.39 -0.57 -10.40 16 15 C 0.53 8.73 7.84 -10.99 -0.09 8.65 16 16 O -0.55 -10.74 16.29 5.55 0.09 -10.64 16 17 C -0.13 -1.74 5.10 -27.88 -0.14 -1.88 16 18 C 0.08 1.02 5.23 37.16 0.19 1.22 16 19 O -0.39 -4.83 10.34 -35.23 -0.36 -5.19 16 20 C 0.09 0.95 6.22 37.16 0.23 1.18 16 21 C -0.15 -1.35 6.06 -90.61 -0.55 -1.90 16 22 C -0.18 -1.32 10.18 -26.69 -0.27 -1.59 16 23 C -0.18 -1.23 10.25 -26.69 -0.27 -1.50 16 24 C 0.11 1.58 5.75 -3.42 -0.02 1.56 16 25 C -0.12 -2.09 4.17 -88.36 -0.37 -2.46 16 26 H 0.10 1.48 8.14 -51.92 -0.42 1.06 16 27 C 0.17 3.94 4.92 -3.41 -0.02 3.92 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.03 0.52 7.44 -51.92 -0.39 0.13 16 31 H 0.07 1.42 7.29 -51.93 -0.38 1.05 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.34 7.87 -51.93 -0.41 0.93 16 35 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.45 7.87 -51.93 -0.41 0.05 16 39 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.13 7.42 -51.93 -0.39 0.74 16 46 H 0.02 0.48 7.71 -51.93 -0.40 0.08 16 47 H 0.09 2.43 6.19 -51.93 -0.32 2.11 16 LS Contribution 374.37 15.07 5.64 5.64 Total: -1.00 -31.94 374.37 -10.34 -42.28 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -8.14 Total: -0.37 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -1.95 Total: 3.23 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.59 Total: -51.92 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.27 Total: -15.84 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.94 -10.34 -42.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754842016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.224 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds