Wall clock time and date at job start Tue Mar 31 2020 10:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00162 * 2 1 4 4 H 1.48495 * 109.47431 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46972 * 299.99409 * 3 2 1 6 6 H 1.48507 * 109.47173 * 59.99395 * 3 2 1 7 7 C 1.38813 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99951 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00402 * 0.02562 * 7 2 1 10 10 C 1.46663 * 125.34001 * 180.02562 * 9 7 2 11 11 C 1.53727 * 107.94540 * 179.45296 * 10 9 7 12 12 H 1.09000 * 113.05641 * 219.99528 * 11 10 9 13 13 C 1.53688 * 109.34502 * 93.74050 * 11 10 9 14 14 N 1.46636 * 108.01202 * 232.44709 * 13 11 10 15 15 C 1.34776 * 125.32937 * 179.17995 * 14 13 11 16 16 O 1.21287 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00020 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.47422 * 180.02562 * 17 15 14 19 19 O 1.42899 * 109.47365 * 180.02562 * 18 17 15 20 20 C 1.42906 * 113.99975 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.46801 * 179.97438 * 20 19 18 22 22 C 1.53001 * 117.49757 * 243.74182 * 21 20 19 23 23 C 1.53009 * 117.49139 * 175.08744 * 21 20 19 24 24 C 1.46742 * 109.34326 * 359.16592 * 14 13 11 25 25 C 1.53934 * 106.71885 * 18.33846 * 24 14 13 26 26 H 1.09008 * 113.01089 * 209.16974 * 25 24 14 27 27 C 1.46774 * 125.33569 * 359.97438 * 9 7 2 28 28 H 0.97003 * 119.99806 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.77731 * 59.82371 * 10 9 7 30 30 H 1.09009 * 109.77109 * 299.06714 * 10 9 7 31 31 H 1.09002 * 109.75712 * 352.09025 * 13 11 10 32 32 H 1.09001 * 109.75852 * 112.79979 * 13 11 10 33 33 H 1.09004 * 109.47458 * 300.00704 * 17 15 14 34 34 H 1.08999 * 109.47362 * 60.00579 * 17 15 14 35 35 H 1.09004 * 109.46865 * 300.00438 * 18 17 15 36 36 H 1.09004 * 109.47302 * 59.99874 * 18 17 15 37 37 H 1.09001 * 109.46845 * 299.99998 * 20 19 18 38 38 H 1.09002 * 109.46911 * 59.99604 * 20 19 18 39 39 H 1.08996 * 115.55196 * 29.42392 * 21 20 19 40 40 H 1.09000 * 117.49627 * 0.02562 * 22 21 20 41 41 H 1.09000 * 117.49335 * 145.01992 * 22 21 20 42 42 H 1.09006 * 117.49384 * 214.97630 * 23 21 20 43 43 H 1.08994 * 117.50142 * 0.02562 * 23 21 20 44 44 H 1.09005 * 110.00507 * 259.02990 * 24 14 13 45 45 H 1.08995 * 110.01348 * 137.65823 * 24 14 13 46 46 H 1.08999 * 110.02523 * 79.22951 * 27 9 7 47 47 H 1.09003 * 110.02832 * 317.81270 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.9375 -3.7210 0.0016 11 6 0.8061 -4.7616 0.0152 12 1 1.0171 -5.6132 0.6619 13 6 0.4840 -5.1823 -1.4275 14 7 -0.9589 -5.0228 -1.6349 15 6 -1.6139 -5.2786 -2.7846 16 8 -1.0038 -5.6754 -3.7549 17 6 -3.1046 -5.0727 -2.8644 18 6 -3.5950 -5.4335 -4.2680 19 8 -5.0085 -5.2376 -4.3438 20 6 -5.5706 -5.5473 -5.6207 21 6 -7.0805 -5.3028 -5.5860 22 6 -7.9967 -6.5116 -5.7867 23 6 -7.8530 -5.4672 -6.8965 24 6 -1.5779 -4.5415 -0.3946 25 6 -0.4447 -3.9582 0.4686 26 1 -0.6410 -4.0349 1.5381 27 6 -0.1359 -2.5246 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 2.5592 -3.8406 0.8888 30 1 2.5449 -3.8485 -0.8945 31 1 1.0291 -4.5481 -2.1267 32 1 0.7652 -6.2244 -1.5790 33 1 -3.5993 -5.7106 -2.1319 34 1 -3.3390 -4.0291 -2.6544 35 1 -3.1004 -4.7959 -5.0008 36 1 -3.3607 -6.4772 -4.4777 37 1 -5.1166 -4.9119 -6.3812 38 1 -5.3775 -6.5933 -5.8586 39 1 -7.4153 -4.5261 -4.8985 40 1 -7.5236 -7.4811 -5.9430 41 1 -8.9344 -6.5300 -5.2312 42 1 -8.6963 -4.7990 -7.0708 43 1 -7.2855 -5.7500 -7.7831 44 1 -2.0570 -5.3691 0.1286 45 1 -2.3115 -3.7674 -0.6198 46 1 -0.5253 -2.3688 -1.0055 47 1 -0.5782 -1.8038 0.6883 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754842016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:04 Heat of formation + Delta-G solvation = -48.332983 kcal Electronic energy + Delta-G solvation = -25493.639702 eV Core-core repulsion = 21870.112858 eV Total energy + Delta-G solvation = -3623.526845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.58752 -39.89887 -39.23491 -37.49123 -36.61905 -34.21693 -32.87853 -31.64930 -31.16355 -28.16136 -27.35811 -27.01976 -25.09509 -23.65436 -23.24821 -21.91836 -21.63703 -20.86339 -20.19350 -18.90709 -18.50027 -17.64326 -17.51525 -17.08647 -16.61812 -16.33548 -16.14314 -15.84993 -15.48951 -15.23163 -14.84457 -14.66348 -14.27934 -14.14386 -13.88804 -13.61004 -13.43164 -13.23006 -13.13213 -12.79224 -12.71542 -12.59905 -12.54775 -12.36819 -12.03504 -11.97674 -11.86761 -11.80654 -11.59173 -11.35877 -11.26287 -11.18738 -11.02242 -10.71776 -10.50392 -9.65583 -8.87746 -7.81277 -5.21868 1.44925 1.45689 1.51229 1.55767 1.82907 2.48124 2.58088 2.94018 3.29946 3.39647 3.50484 3.72213 3.79861 3.86239 3.93843 3.96400 4.01071 4.02714 4.23234 4.27215 4.30618 4.35577 4.44390 4.49479 4.55397 4.64650 4.65284 4.76070 4.77571 4.77987 4.78687 4.87091 4.95056 4.97934 5.01155 5.08242 5.22901 5.24067 5.25271 5.42123 5.47399 5.66528 5.82469 6.14964 6.28655 6.47620 7.03891 7.12167 7.80248 8.40732 9.22755 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.002727 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.253081 B =10265.754830 C =11306.510324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.066 4.066 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.296 1.296 6 H -0.288 1.288 7 C -0.240 4.240 8 H 0.079 0.921 9 N -0.626 5.626 10 C 0.137 3.863 11 C -0.092 4.092 12 H 0.136 0.864 13 C 0.121 3.879 14 N -0.609 5.609 15 C 0.527 3.473 16 O -0.590 6.590 17 C -0.125 4.125 18 C 0.085 3.915 19 O -0.398 6.398 20 C 0.089 3.911 21 C -0.172 4.172 22 C -0.174 4.174 23 C -0.166 4.166 24 C 0.113 3.887 25 C -0.112 4.112 26 H 0.122 0.878 27 C 0.179 3.821 28 H 0.246 0.754 29 H 0.036 0.964 30 H 0.017 0.983 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.077 0.923 46 H -0.020 1.020 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.427 -15.323 -5.024 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.258 4.258 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.223 1.223 6 H -0.214 1.214 7 C -0.369 4.369 8 H 0.096 0.904 9 N -0.352 5.352 10 C 0.011 3.989 11 C -0.111 4.111 12 H 0.153 0.847 13 C -0.002 4.002 14 N -0.341 5.341 15 C 0.317 3.683 16 O -0.471 6.471 17 C -0.164 4.164 18 C 0.008 3.992 19 O -0.318 6.318 20 C 0.013 3.987 21 C -0.190 4.190 22 C -0.211 4.211 23 C -0.203 4.203 24 C -0.009 4.009 25 C -0.132 4.132 26 H 0.140 0.860 27 C 0.053 3.947 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.146 0.854 34 H 0.123 0.877 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.095 0.905 46 H -0.002 1.002 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.269 -15.278 -5.444 20.955 hybrid contribution 0.909 1.398 -0.504 1.742 sum -12.360 -13.880 -5.948 19.514 Atomic orbital electron populations 1.70112 1.06028 1.24931 1.58462 1.25598 0.96697 1.00845 1.02700 0.85029 0.78119 0.79586 0.76718 1.19263 1.22332 1.21439 1.19457 0.90989 0.83870 1.42622 0.90351 1.44591 1.02826 1.00997 1.86779 1.21349 0.94759 0.84641 0.98124 1.22769 0.95146 0.98220 0.94934 0.84657 1.21802 0.81079 1.00771 0.96525 1.48304 1.08899 1.64684 1.12214 1.20541 0.90392 0.76544 0.80776 1.90665 1.70687 1.49148 1.36633 1.21390 0.89782 1.05898 0.99371 1.21991 0.80710 1.00507 0.95997 1.87776 1.21041 1.89089 1.33884 1.22141 0.92222 0.99670 0.84661 1.22133 0.91629 1.02716 1.02527 1.23177 1.01459 0.93947 1.02524 1.23093 1.02412 1.02641 0.92149 1.22134 0.95574 0.99618 0.83590 1.23206 0.93993 0.95199 1.00817 0.86027 1.21205 0.83741 0.93123 0.96583 0.94412 0.94557 0.96517 0.94849 0.90136 0.85362 0.87662 0.93890 0.92303 0.92818 0.92266 0.87609 0.88195 0.87789 0.87376 0.87943 0.87320 0.90485 1.00249 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.07 10.16 21.65 0.22 -55.85 16 2 C -0.07 -3.73 5.48 84.86 0.47 -3.27 16 3 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 7 C -0.24 -13.52 10.25 84.03 0.86 -12.66 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 9 N -0.63 -31.81 3.38 -697.64 -2.36 -34.17 16 10 C 0.14 5.42 6.62 86.59 0.57 5.99 16 11 C -0.09 -2.76 4.02 -9.49 -0.04 -2.80 16 12 H 0.14 2.98 8.14 -2.39 -0.02 2.96 16 13 C 0.12 3.92 6.22 86.59 0.54 4.46 16 14 N -0.61 -18.87 3.30 -817.69 -2.70 -21.57 16 15 C 0.53 16.89 7.84 87.66 0.69 17.58 16 16 O -0.59 -23.07 16.29 -3.05 -0.05 -23.12 16 17 C -0.12 -3.06 5.10 29.85 0.15 -2.91 16 18 C 0.08 2.13 5.23 71.98 0.38 2.50 16 19 O -0.40 -9.63 10.34 -148.98 -1.54 -11.17 16 20 C 0.09 1.73 6.22 71.98 0.45 2.18 16 21 C -0.17 -2.89 6.06 -10.79 -0.07 -2.95 16 22 C -0.17 -2.28 10.18 30.62 0.31 -1.97 16 23 C -0.17 -2.07 10.25 30.62 0.31 -1.76 16 24 C 0.11 2.95 5.75 86.65 0.50 3.45 16 25 C -0.11 -3.58 4.17 -9.33 -0.04 -3.62 16 26 H 0.12 3.32 8.14 -2.38 -0.02 3.30 16 27 C 0.18 8.39 4.92 86.64 0.43 8.82 16 28 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.02 0.69 7.44 -2.38 -0.02 0.68 16 31 H 0.03 1.33 7.29 -2.39 -0.02 1.32 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.13 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.11 2.60 7.87 -2.39 -0.02 2.58 16 35 H 0.04 1.19 8.10 -2.38 -0.02 1.17 16 36 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.02 7.87 -2.39 -0.02 1.00 16 39 H 0.11 1.94 8.14 -2.39 -0.02 1.93 16 40 H 0.10 1.20 8.03 -2.39 -0.02 1.18 16 41 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.11 1.95 8.14 -2.38 -0.02 1.94 16 45 H 0.08 2.07 7.42 -2.39 -0.02 2.06 16 46 H -0.02 -1.10 7.71 -2.39 -0.02 -1.12 16 47 H 0.06 3.16 6.19 -2.39 -0.01 3.14 16 Total: -1.00 -72.50 374.37 2.04 -70.46 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.93 Total: 14.29 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 5.51 Total: 13.05 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -4.84 Total: -111.59 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.59 Total: -34.28 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -72.50 2.04 -70.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754842016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.126 kcal (2) G-P(sol) polarization free energy of solvation -72.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds