Wall clock time and date at job start Tue Mar 31 2020 10:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99763 * 2 1 4 4 H 1.48502 * 109.47166 * 239.99807 * 3 2 1 5 5 H 1.48498 * 109.47226 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47082 * 120.00055 * 3 2 1 7 7 C 1.38811 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99815 * 164.34284 * 7 2 1 9 9 N 1.36939 * 120.00269 * 344.61651 * 7 2 1 10 10 C 1.47154 * 120.97759 * 333.41543 * 9 7 2 11 11 C 1.52886 * 108.60500 * 230.50171 * 10 9 7 12 12 O 1.42971 * 109.29549 * 307.93555 * 11 10 9 13 13 C 1.42957 * 114.16401 * 62.45111 * 12 11 10 14 14 H 1.08995 * 109.51603 * 57.34326 * 13 12 11 15 15 C 1.53007 * 109.51041 * 177.49506 * 13 12 11 16 16 N 1.46500 * 109.46869 * 299.74679 * 15 13 12 17 17 C 1.34780 * 119.99671 * 180.02562 * 16 15 13 18 18 O 1.21279 * 120.00153 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.99607 * 179.97438 * 17 16 15 20 20 H 1.09002 * 110.05438 * 23.31667 * 19 17 16 21 21 C 1.54390 * 110.06657 * 144.79577 * 19 17 16 22 22 C 1.54927 * 104.22331 * 142.78267 * 21 19 17 23 23 C 1.54984 * 102.81913 * 322.28158 * 22 21 19 24 24 C 1.53477 * 110.07162 * 261.76367 * 19 17 16 25 25 C 1.52567 * 121.04856 * 96.57389 * 24 19 17 26 26 C 1.52546 * 121.08858 * 24.86144 * 24 19 17 27 27 C 1.47149 * 120.98270 * 153.69604 * 9 7 2 28 28 H 0.96993 * 119.99884 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.68504 * 350.28031 * 10 9 7 30 30 H 1.08999 * 109.68451 * 110.83721 * 10 9 7 31 31 H 1.08996 * 109.58116 * 187.92633 * 11 10 9 32 32 H 1.08993 * 109.36958 * 67.81347 * 11 10 9 33 33 H 1.09001 * 109.46688 * 59.74742 * 15 13 12 34 34 H 1.09001 * 109.46926 * 179.74391 * 15 13 12 35 35 H 0.97001 * 120.00190 * 359.97438 * 16 15 13 36 36 H 1.09002 * 110.47979 * 261.46986 * 21 19 17 37 37 H 1.08998 * 110.48099 * 24.09670 * 21 19 17 38 38 H 1.08996 * 110.74185 * 80.61647 * 22 21 19 39 39 H 1.08994 * 110.73946 * 203.94718 * 22 21 19 40 40 H 1.09002 * 110.51470 * 156.22009 * 23 22 21 41 41 H 1.09000 * 110.51082 * 278.79301 * 23 22 21 42 42 H 1.09006 * 117.51584 * 356.97125 * 25 24 19 43 43 H 1.09008 * 117.51245 * 142.05736 * 25 24 19 44 44 H 1.08996 * 117.50932 * 217.88302 * 26 24 19 45 45 H 1.09000 * 117.51262 * 2.96478 * 26 24 19 46 46 H 1.08995 * 109.68222 * 249.16418 * 27 9 7 47 47 H 1.08999 * 109.67870 * 9.71716 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0602 -1.2194 -0.2530 9 7 1.3624 -2.3670 0.3135 10 6 0.1742 -2.3625 1.1816 11 6 0.3738 -3.3995 2.2871 12 8 0.7269 -4.6542 1.6997 13 6 1.9591 -4.6351 0.9752 14 1 2.7642 -4.3107 1.6345 15 6 2.2636 -6.0386 0.4475 16 7 2.3796 -6.9690 1.5733 17 6 2.6472 -8.2704 1.3470 18 8 2.7913 -8.6714 0.2116 19 6 2.7671 -9.2273 2.5050 20 1 2.2275 -8.8385 3.3686 21 6 2.2073 -10.6106 2.1094 22 6 3.1522 -11.6184 2.8105 23 6 4.5397 -10.9417 2.6731 24 6 4.2448 -9.4430 2.8591 25 6 4.9093 -8.6496 3.9802 26 6 5.2973 -8.3914 2.5220 27 6 1.8375 -3.6607 -0.2020 28 1 -0.4849 0.8400 -0.0004 29 1 0.0471 -1.3748 1.6249 30 1 -0.7089 -2.6192 0.5965 31 1 -0.5499 -3.5105 2.8549 32 1 1.1731 -3.0706 2.9512 33 1 1.4567 -6.3625 -0.2098 34 1 3.2009 -6.0223 -0.1086 35 1 2.2647 -6.6482 2.4814 36 1 1.1867 -10.7275 2.4740 37 1 2.2443 -10.7419 1.0280 38 1 2.8819 -11.7352 3.8599 39 1 3.1393 -12.5803 2.2981 40 1 5.2167 -11.2971 3.4500 41 1 4.9606 -11.1305 1.6855 42 1 4.3101 -7.8910 4.4838 43 1 5.6307 -9.1727 4.6081 44 1 6.2737 -8.7446 2.1907 45 1 4.9533 -7.4629 2.0664 46 1 1.1247 -4.0504 -0.9288 47 1 2.8113 -3.5323 -0.6746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035418921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:20 Heat of formation + Delta-G solvation = -44.212612 kcal Electronic energy + Delta-G solvation = -26149.814870 eV Core-core repulsion = 22526.466698 eV Total energy + Delta-G solvation = -3623.348172 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.55519 -38.76002 -37.91074 -34.97504 -34.40728 -34.13289 -31.65119 -30.83060 -29.47236 -27.50098 -26.15447 -25.18139 -23.21604 -22.71583 -22.08662 -21.24844 -20.60016 -19.76988 -18.87870 -17.12167 -16.87854 -16.14556 -16.13333 -15.72202 -15.18501 -15.00148 -14.63352 -14.48616 -14.30798 -13.86788 -13.59572 -13.29409 -13.09499 -13.05180 -12.73987 -12.68399 -12.31832 -11.82905 -11.70975 -11.54293 -11.30473 -11.13566 -11.09583 -10.87194 -10.82770 -10.74644 -10.47711 -10.43268 -10.30858 -10.23097 -10.00814 -9.73362 -9.49497 -9.10055 -8.93755 -8.57448 -6.78352 -5.86796 -3.31470 2.68373 3.15329 3.33085 3.38846 3.39645 3.61845 4.11846 4.21424 4.35708 4.40470 4.60211 4.62371 4.83645 4.99195 5.03344 5.14109 5.20778 5.30785 5.37147 5.42623 5.45368 5.49411 5.51526 5.59711 5.65462 5.74979 5.78199 5.80850 5.83373 5.87256 5.91528 5.95085 6.02226 6.13362 6.15854 6.28423 6.34201 6.46144 6.55639 6.72694 7.08142 7.49511 7.60554 7.67043 7.82516 8.30365 8.31717 9.08692 9.70973 10.27661 11.21282 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.002797 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.406680 B =10009.029752 C =10310.835634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.907 3.093 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.058 0.942 15 C 0.130 3.870 16 N -0.720 5.720 17 C 0.520 3.480 18 O -0.542 6.542 19 C -0.077 4.077 20 H 0.090 0.910 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.086 4.086 24 C -0.117 4.117 25 C -0.165 4.165 26 C -0.169 4.169 27 C 0.122 3.878 28 H 0.256 0.744 29 H 0.096 0.904 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.030 0.970 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.627 -19.303 9.501 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.737 3.263 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.006 3.994 14 H 0.076 0.924 15 C 0.006 3.994 16 N -0.371 5.371 17 C 0.306 3.694 18 O -0.419 6.419 19 C -0.098 4.098 20 H 0.109 0.891 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.202 4.202 26 C -0.206 4.206 27 C -0.006 4.006 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.236 0.764 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.048 0.952 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.489 -19.555 8.656 22.348 hybrid contribution 0.414 1.545 0.413 1.652 sum 6.902 -18.011 9.070 21.314 Atomic orbital electron populations 1.70010 1.05264 1.25790 1.53760 1.25065 0.95392 0.98475 1.00701 0.86297 0.78833 0.83019 0.78180 1.20783 1.21517 1.20965 1.19166 0.92200 0.84243 1.42936 0.91378 1.44041 1.32030 1.01225 1.54488 1.21373 0.88910 0.98191 0.90190 1.23259 0.98926 0.85120 0.96498 1.87781 1.39773 1.33103 1.70271 1.22802 0.87136 0.93950 0.95558 0.92446 1.21416 1.01938 0.87168 0.88878 1.46044 1.71988 1.08275 1.10776 1.20444 0.75852 0.82562 0.90548 1.90668 1.50188 1.77404 1.23657 1.21417 0.95408 0.96235 0.96772 0.89143 1.22360 0.98600 0.91540 1.02422 1.22446 0.94620 0.98106 1.00537 1.21867 0.97339 0.91279 1.01859 1.21512 0.91928 0.94079 1.04242 1.23055 1.03161 1.02583 0.91437 1.23002 0.99371 1.00028 0.98210 1.21445 0.98899 0.87225 0.92995 0.93413 0.88626 0.95439 0.90017 0.94171 0.90794 0.90339 0.76361 0.91178 0.89567 0.91344 0.91171 0.91510 0.90895 0.88581 0.88508 0.88538 0.88534 0.95232 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 11.07 55.49 0.61 -25.25 16 2 C 0.00 0.06 4.98 -17.43 -0.09 -0.02 16 3 Si 0.91 21.32 29.58 -169.99 -5.03 16.29 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.93 9.65 -15.06 -0.15 -7.07 16 8 H 0.07 1.79 7.87 -52.49 -0.41 1.38 16 9 N -0.59 -14.80 3.06 -172.08 -0.53 -15.32 16 10 C 0.14 3.29 5.41 -3.74 -0.02 3.27 16 11 C 0.04 0.75 6.97 37.10 0.26 1.01 16 12 O -0.39 -7.20 10.14 -35.23 -0.36 -7.56 16 13 C 0.07 1.13 2.86 -26.57 -0.08 1.06 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.97 5.37 -4.04 -0.02 1.95 16 16 N -0.72 -9.50 5.30 -60.29 -0.32 -9.82 16 17 C 0.52 7.08 5.52 -10.99 -0.06 7.02 16 18 O -0.54 -9.33 15.84 5.56 0.09 -9.24 16 19 C -0.08 -0.80 3.16 -90.80 -0.29 -1.09 16 20 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 21 C -0.11 -1.08 6.33 -24.99 -0.16 -1.24 16 22 C -0.12 -0.93 6.91 -24.67 -0.17 -1.10 16 23 C -0.09 -0.72 6.58 -25.23 -0.17 -0.89 16 24 C -0.12 -1.11 2.26 -154.26 -0.35 -1.45 16 25 C -0.17 -1.35 10.23 -26.91 -0.28 -1.63 16 26 C -0.17 -1.67 9.63 -26.92 -0.26 -1.93 16 27 C 0.12 2.53 6.03 -3.53 -0.02 2.51 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.10 2.48 6.11 -51.93 -0.32 2.16 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.40 4.69 8.33 -40.82 -0.34 4.35 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.02 6.97 -51.93 -0.36 0.66 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.10 1.09 7.17 -51.93 -0.37 0.72 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -31.10 371.13 -9.89 -40.99 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.11 Total: 3.93 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.84 Total: 0.39 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.23 Total: -50.39 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.27 Total: -16.80 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.10 -9.89 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035418921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.223 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds