Wall clock time and date at job start Tue Mar 31 2020 09:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.42146 * 2 1 4 4 C 1.54476 * 110.37408 * 237.68923 * 2 1 3 5 5 C 1.54516 * 104.06113 * 217.19027 * 4 2 1 6 6 C 1.54473 * 104.06319 * 359.97438 * 5 4 2 7 7 H 1.09002 * 110.46721 * 265.09806 * 6 5 4 8 8 C 1.50706 * 110.37190 * 142.81230 * 6 5 4 9 9 O 1.21277 * 119.99864 * 248.16761 * 8 6 5 10 10 N 1.34777 * 120.00107 * 68.16207 * 8 6 5 11 11 C 1.46494 * 120.00191 * 179.97438 * 10 8 6 12 12 C 1.54321 * 112.36134 * 299.34679 * 11 10 8 13 13 C 1.55062 * 103.93547 * 262.38610 * 12 11 10 14 14 C 1.55057 * 102.10704 * 319.94498 * 13 12 11 15 15 C 1.54325 * 103.93854 * 40.05601 * 14 13 12 16 16 H 1.09002 * 111.68829 * 98.06821 * 15 14 13 17 17 C 1.53778 * 109.06010 * 222.03287 * 15 14 13 18 18 N 1.47218 * 106.38011 * 94.89105 * 17 15 14 19 19 C 1.36938 * 126.69800 * 211.27773 * 18 17 15 20 20 H 1.08005 * 119.99233 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00215 * 0.02562 * 19 18 17 22 22 N 1.31619 * 119.99901 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99764 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47250 * 60.00312 * 23 21 19 25 25 H 1.48500 * 109.47081 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47302 * 300.00273 * 23 21 19 27 27 C 1.47211 * 106.59299 * 31.28183 * 18 17 15 28 28 O 1.44424 * 104.80239 * 23.98236 * 6 5 4 29 29 H 1.08996 * 109.46974 * 299.14350 * 1 2 3 30 30 H 1.08995 * 109.46696 * 59.14888 * 1 2 3 31 31 H 1.09002 * 109.46535 * 179.15079 * 1 2 3 32 32 H 1.09000 * 110.50976 * 335.83284 * 4 2 1 33 33 H 1.08998 * 110.51212 * 98.54403 * 4 2 1 34 34 H 1.09001 * 110.50871 * 241.35259 * 5 4 2 35 35 H 1.08999 * 110.51077 * 118.64550 * 5 4 2 36 36 H 0.96998 * 119.99604 * 0.02562 * 10 8 6 37 37 H 1.09002 * 110.53536 * 143.77856 * 12 11 10 38 38 H 1.08994 * 110.53769 * 21.00205 * 12 11 10 39 39 H 1.08996 * 110.90165 * 201.73821 * 13 12 11 40 40 H 1.09004 * 110.89792 * 78.14209 * 13 12 11 41 41 H 1.09003 * 110.52966 * 158.66676 * 14 13 12 42 42 H 1.09000 * 110.53382 * 281.29521 * 14 13 12 43 43 H 1.09001 * 110.07257 * 214.12118 * 17 15 14 44 44 H 1.08996 * 110.07134 * 335.65829 * 17 15 14 45 45 H 0.97000 * 119.99418 * 179.97438 * 22 21 19 46 46 H 1.08991 * 110.07852 * 87.94927 * 27 18 17 47 47 H 1.09003 * 110.06871 * 209.48812 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3179 -1.5057 -0.6857 6 6 3.3877 -1.0866 0.7994 7 1 4.0534 -0.2324 0.9235 8 6 3.8534 -2.2410 1.6490 9 8 3.0899 -2.7638 2.4328 10 7 5.1185 -2.6924 1.5375 11 6 5.5713 -3.8142 2.3637 12 6 5.4820 -3.5054 3.8730 13 6 6.9219 -3.0717 4.2514 14 6 7.7863 -4.0667 3.4347 15 6 7.0510 -4.1747 2.0822 16 1 7.5006 -3.5302 1.3267 17 6 7.0326 -5.6464 1.6366 18 7 5.7488 -6.2027 2.0944 19 6 5.5058 -7.4961 2.4730 20 1 4.5162 -7.7885 2.7919 21 6 6.5313 -8.4312 2.4468 22 7 7.7374 -8.0747 2.0586 23 14 6.1999 -10.1954 2.9639 24 1 5.1574 -10.7816 2.0839 25 1 7.4500 -10.9885 2.8473 26 1 5.7292 -10.2184 4.3722 27 6 4.7773 -5.0970 2.0656 28 8 2.0332 -0.7229 1.1443 29 1 -0.3633 0.5005 0.8975 30 1 -0.3632 0.5270 -0.8822 31 1 -0.3632 -1.0276 -0.0152 32 1 1.3276 -1.4920 -1.5771 33 1 2.3430 -0.0840 -2.0215 34 1 4.2110 -1.1773 -1.2173 35 1 3.1956 -2.5853 -0.7730 36 1 5.7292 -2.2741 0.9108 37 1 5.1926 -4.3970 4.4293 38 1 4.7777 -2.6939 4.0563 39 1 7.0959 -3.1920 5.3206 40 1 7.1129 -2.0446 3.9406 41 1 8.7923 -3.6717 3.2925 42 1 7.8240 -5.0367 3.9304 43 1 7.1017 -5.7094 0.5507 44 1 7.8599 -6.1868 2.0966 45 1 8.4540 -8.7281 2.0407 46 1 4.3151 -5.0306 1.0808 47 1 4.0137 -5.2501 2.8283 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099039708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:21 Heat of formation + Delta-G solvation = -79.736193 kcal Electronic energy + Delta-G solvation = -27089.728769 eV Core-core repulsion = 23464.840179 eV Total energy + Delta-G solvation = -3624.888590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.80801 -40.60835 -39.01190 -36.24581 -34.83894 -33.46241 -33.26354 -32.58642 -31.02361 -29.60690 -27.61565 -26.30697 -26.07622 -23.73820 -22.52114 -22.21884 -22.01021 -20.71063 -20.32926 -19.12445 -18.14421 -17.52447 -17.28496 -16.81914 -16.60852 -16.00935 -15.77250 -15.46716 -15.30320 -14.98159 -14.75648 -14.69639 -14.46509 -14.37589 -13.65688 -13.45691 -13.23341 -13.10827 -12.86192 -12.81563 -12.67825 -12.47397 -12.19531 -12.11208 -12.05545 -11.87099 -11.79312 -11.72913 -11.67954 -11.64284 -11.59139 -11.42661 -10.95437 -10.75980 -10.50956 -10.07641 -8.93040 -7.77636 -5.25678 1.44653 1.47569 1.54079 1.59188 1.87783 2.47266 3.02152 3.27843 3.39801 3.51438 3.63760 3.71570 3.84009 3.88334 3.92377 3.99928 4.18165 4.27864 4.39190 4.40377 4.46108 4.49742 4.56828 4.59821 4.72299 4.77089 4.78065 4.88264 4.91449 4.94733 4.96187 5.02945 5.03675 5.09162 5.17805 5.21860 5.26686 5.27533 5.40667 5.46361 5.60175 5.70873 5.82246 5.86631 6.37294 6.61621 7.09005 7.29872 7.73221 8.40200 9.20487 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.003763 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.423097 B = 7439.668140 C = 8091.524484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 H 0.095 0.905 4 C -0.144 4.144 5 C -0.143 4.143 6 C 0.063 3.937 7 H 0.129 0.871 8 C 0.510 3.490 9 O -0.568 6.568 10 N -0.692 5.692 11 C 0.173 3.827 12 C -0.110 4.110 13 C -0.109 4.109 14 C -0.105 4.105 15 C -0.101 4.101 16 H 0.111 0.889 17 C 0.140 3.860 18 N -0.612 5.612 19 C -0.244 4.244 20 H 0.069 0.931 21 C -0.056 4.056 22 N -0.939 5.939 23 Si 0.979 3.021 24 H -0.282 1.282 25 H -0.285 1.285 26 H -0.280 1.280 27 C 0.144 3.856 28 O -0.383 6.383 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.054 0.946 36 H 0.417 0.583 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.040 0.960 43 H -0.017 1.017 44 H 0.104 0.896 45 H 0.251 0.749 46 H -0.002 1.002 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 21.321 -6.752 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.001 3.999 3 H 0.113 0.887 4 C -0.181 4.181 5 C -0.181 4.181 6 C 0.002 3.998 7 H 0.146 0.854 8 C 0.296 3.704 9 O -0.445 6.445 10 N -0.346 5.346 11 C 0.085 3.915 12 C -0.148 4.148 13 C -0.146 4.146 14 C -0.142 4.142 15 C -0.121 4.121 16 H 0.129 0.871 17 C 0.015 3.985 18 N -0.337 5.337 19 C -0.372 4.372 20 H 0.086 0.914 21 C -0.249 4.249 22 N -0.589 5.589 23 Si 0.807 3.193 24 H -0.208 1.208 25 H -0.211 1.211 26 H -0.206 1.206 27 C 0.016 3.984 28 O -0.303 6.303 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.073 0.927 36 H 0.255 0.745 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.059 0.941 43 H 0.000 1.000 44 H 0.122 0.878 45 H 0.061 0.939 46 H 0.016 0.984 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.115 20.674 -5.977 21.910 hybrid contribution -0.228 -1.454 -0.121 1.476 sum -4.343 19.220 -6.098 20.627 Atomic orbital electron populations 1.21837 0.92774 1.02333 1.03452 1.23362 0.96040 0.96209 0.84271 0.88742 1.23032 0.96597 0.99954 0.98563 1.22962 1.01589 1.01087 0.92481 1.22977 0.86993 0.95666 0.94132 0.85358 1.20949 0.81766 0.84673 0.82967 1.90716 1.55043 1.59646 1.39140 1.45711 1.12321 1.34106 1.42468 1.21419 0.94204 0.84804 0.91032 1.22530 0.98467 1.00126 0.93700 1.22559 0.92623 0.99447 0.99981 1.22363 0.99053 0.98745 0.94085 1.22944 0.92239 0.97762 0.99114 0.87090 1.21926 0.91188 0.90859 0.94513 1.44669 1.06971 1.05239 1.76780 1.19317 0.95639 0.85105 1.37174 0.91351 1.25515 0.95483 1.01984 1.01911 1.69810 1.01221 1.33613 1.54205 0.85151 0.76690 0.79350 0.78108 1.20838 1.21054 1.20585 1.21546 0.92096 0.88510 0.96205 1.89265 1.26173 1.75087 1.39744 0.92321 0.88326 0.93493 0.91146 0.86913 0.85991 0.92691 0.74524 0.93889 0.91960 0.91072 0.89087 0.89290 0.94119 0.99952 0.87828 0.93911 0.98404 0.96004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.53 71.98 0.69 -1.65 16 2 C 0.06 0.99 3.92 31.10 0.12 1.11 16 3 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.14 -2.02 6.63 31.61 0.21 -1.81 16 5 C -0.14 -2.44 6.62 31.61 0.21 -2.24 16 6 C 0.06 1.40 3.71 30.35 0.11 1.51 16 7 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 8 C 0.51 16.08 6.39 87.66 0.56 16.64 16 9 O -0.57 -24.33 14.54 15.33 0.22 -24.11 16 10 N -0.69 -19.57 5.20 -416.83 -2.17 -21.74 16 11 C 0.17 6.37 0.92 4.96 0.00 6.37 16 12 C -0.11 -4.01 5.53 31.75 0.18 -3.84 16 13 C -0.11 -3.13 6.92 32.00 0.22 -2.90 16 14 C -0.10 -3.44 6.23 31.75 0.20 -3.25 16 15 C -0.10 -3.57 3.66 -9.44 -0.03 -3.60 16 16 H 0.11 3.06 7.75 -2.39 -0.02 3.04 16 17 C 0.14 6.83 5.56 86.50 0.48 7.32 16 18 N -0.61 -33.34 3.39 -695.35 -2.36 -35.70 16 19 C -0.24 -14.43 10.34 84.03 0.87 -13.56 16 20 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 21 C -0.06 -3.22 5.49 84.86 0.47 -2.75 16 22 N -0.94 -55.14 10.08 21.65 0.22 -54.92 16 23 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 C 0.14 6.93 5.28 86.51 0.46 7.39 16 28 O -0.38 -10.48 10.60 -130.63 -1.39 -11.87 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.91 8.12 -2.39 -0.02 0.89 16 32 H 0.07 1.12 7.86 -2.39 -0.02 1.10 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.05 1.26 7.87 -2.39 -0.02 1.24 16 36 H 0.42 8.14 8.32 -92.71 -0.77 7.37 16 37 H 0.04 1.86 7.56 -2.39 -0.02 1.84 16 38 H 0.06 2.30 6.69 -2.39 -0.02 2.28 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.04 1.67 7.57 -2.39 -0.02 1.65 16 43 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 44 H 0.10 5.65 4.88 -2.39 -0.01 5.64 16 45 H 0.25 14.22 8.31 -92.71 -0.77 13.44 16 46 H 0.00 -0.09 8.06 -2.39 -0.02 -0.11 16 47 H 0.02 1.15 7.55 -2.39 -0.02 1.13 16 Total: -1.00 -77.96 361.19 1.48 -76.49 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.19 Total: 18.41 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 4.74 Total: 4.75 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -4.31 Total: -112.36 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -1.16 Total: -35.97 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -77.96 1.48 -76.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099039708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.250 kcal (2) G-P(sol) polarization free energy of solvation -77.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds