Wall clock time and date at job start Tue Mar 31 2020 09:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.66652 * 2 1 4 4 C 1.54887 * 110.75824 * 236.76461 * 2 1 3 5 5 C 1.54263 * 104.19882 * 203.55747 * 4 2 1 6 6 C 1.53877 * 106.59495 * 23.60672 * 5 4 2 7 7 H 1.08994 * 110.03379 * 240.66558 * 6 5 4 8 8 N 1.46506 * 110.03102 * 119.28726 * 6 5 4 9 9 C 1.34780 * 120.00032 * 86.17527 * 8 6 5 10 10 O 1.21348 * 119.99676 * 0.27487 * 9 8 6 11 11 C 1.49440 * 119.99960 * 180.27991 * 9 8 6 12 12 O 1.21352 * 120.00138 * 6.74293 * 11 9 8 13 13 N 1.34776 * 120.00268 * 186.74885 * 11 9 8 14 14 C 1.46930 * 120.62679 * 8.41872 * 13 11 9 15 15 C 1.53619 * 108.54323 * 126.37343 * 14 13 11 16 16 C 1.53042 * 109.24443 * 54.85566 * 15 14 13 17 17 C 1.53038 * 109.53743 * 298.51563 * 16 15 14 18 18 H 1.09004 * 109.49459 * 301.41000 * 17 16 15 19 19 C 1.50705 * 109.52641 * 181.33334 * 17 16 15 20 20 H 1.07997 * 119.99632 * 0.14001 * 19 17 16 21 21 C 1.37878 * 120.00246 * 180.14393 * 19 17 16 22 22 N 1.31512 * 120.00049 * 179.97438 * 21 19 17 23 23 Si 1.86808 * 119.99849 * 359.97438 * 21 19 17 24 24 H 1.48495 * 109.47126 * 90.00068 * 23 21 19 25 25 H 1.48496 * 109.46609 * 209.99987 * 23 21 19 26 26 H 1.48497 * 109.46856 * 329.99761 * 23 21 19 27 27 C 1.46925 * 120.63739 * 188.70637 * 13 11 9 28 28 C 1.54267 * 106.60158 * 0.02562 * 6 5 4 29 29 H 1.09002 * 109.46913 * 181.78311 * 1 2 3 30 30 H 1.09004 * 109.46773 * 301.77878 * 1 2 3 31 31 H 1.09001 * 109.47088 * 61.78260 * 1 2 3 32 32 H 1.08996 * 110.48595 * 84.87513 * 4 2 1 33 33 H 1.09003 * 110.59706 * 322.29432 * 4 2 1 34 34 H 1.08997 * 110.02842 * 264.32692 * 5 4 2 35 35 H 1.08994 * 110.03244 * 142.89024 * 5 4 2 36 36 H 0.97000 * 119.99913 * 266.45764 * 8 6 5 37 37 H 1.08999 * 109.58790 * 246.20725 * 14 13 11 38 38 H 1.09002 * 109.58834 * 6.63112 * 14 13 11 39 39 H 1.08998 * 109.63453 * 294.86853 * 15 14 13 40 40 H 1.08998 * 109.43459 * 174.72455 * 15 14 13 41 41 H 1.08992 * 109.46471 * 178.49066 * 16 15 14 42 42 H 1.09003 * 109.44684 * 58.52171 * 16 15 14 43 43 H 0.97004 * 119.99646 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.58143 * 353.36846 * 27 13 11 45 45 H 1.08995 * 109.58801 * 113.64754 * 27 13 11 46 46 H 1.09005 * 110.48518 * 95.06633 * 28 6 5 47 47 H 1.08997 * 110.48686 * 217.70962 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0790 -0.7938 -1.2114 5 6 3.4950 -1.2214 -0.7734 6 6 3.4975 -1.2222 0.7654 7 1 4.2364 -0.5128 1.1380 8 7 3.7959 -2.5664 1.2660 9 6 5.0759 -2.9589 1.4214 10 8 5.9811 -2.1971 1.1513 11 6 5.3803 -4.3321 1.9261 12 8 4.4833 -5.1348 2.0797 13 7 6.6511 -4.6792 2.2108 14 6 7.7207 -3.6718 2.2077 15 6 8.4539 -3.7337 3.5562 16 6 8.9391 -5.1643 3.8015 17 6 7.7366 -6.1089 3.8636 18 1 7.0646 -5.7904 4.6605 19 6 8.2123 -7.5124 4.1376 20 1 9.2669 -7.7112 4.2581 21 6 7.3011 -8.5426 4.2344 22 7 7.7162 -9.7675 4.4731 23 14 5.4767 -8.1986 4.0266 24 1 5.1068 -8.3371 2.5951 25 1 4.6950 -9.1676 4.8359 26 1 5.1783 -6.8175 4.4836 27 6 6.9944 -6.0730 2.5240 28 6 2.0828 -0.7958 1.2087 29 1 -0.3633 -1.0272 0.0320 30 1 -0.3633 0.5412 0.8737 31 1 -0.3633 0.4859 -0.9055 32 1 2.1289 -0.1564 -2.0942 33 1 1.4601 -1.6691 -1.4086 34 1 4.2320 -0.5108 -1.1476 35 1 3.7157 -2.2209 -1.1477 36 1 3.0723 -3.1753 1.4817 37 1 8.4197 -3.8835 1.3986 38 1 7.2888 -2.6805 2.0702 39 1 7.7752 -3.4376 4.3561 40 1 9.3091 -3.0581 3.5354 41 1 9.4832 -5.2066 4.7449 42 1 9.5981 -5.4684 2.9882 43 1 7.0751 -10.4923 4.5408 44 1 6.0829 -6.6666 2.5952 45 1 7.6332 -6.4773 1.7388 46 1 1.4642 -1.6716 1.4046 47 1 2.1354 -0.1594 2.0920 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262128708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:33 Heat of formation + Delta-G solvation = -71.898737 kcal Electronic energy + Delta-G solvation = -26431.925746 eV Core-core repulsion = 22807.377014 eV Total energy + Delta-G solvation = -3624.548732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.83766 -39.27215 -37.97758 -37.11501 -34.45180 -33.23353 -31.93021 -30.86199 -30.50105 -28.84768 -26.27127 -25.15489 -25.03046 -22.94862 -21.98576 -20.84042 -20.46840 -19.86308 -19.02076 -17.41856 -17.01498 -16.72011 -16.44038 -15.81272 -15.51469 -15.10302 -14.28717 -14.20894 -14.11749 -13.86162 -13.78862 -13.59294 -13.42634 -13.11377 -12.77598 -12.73003 -12.53879 -12.16785 -12.05650 -11.87418 -11.60755 -11.32581 -11.21875 -11.07933 -10.93411 -10.88320 -10.80651 -10.53868 -10.35901 -10.11474 -9.76471 -9.46237 -9.36695 -9.14514 -8.78351 -8.62873 -8.15093 -6.11857 -4.13392 1.57928 2.50192 3.34877 3.37433 3.43410 3.54782 3.70911 4.14644 4.17635 4.40461 4.43707 4.52779 4.91257 4.99083 5.06576 5.12007 5.17023 5.19809 5.20048 5.39712 5.42234 5.48096 5.49914 5.57452 5.64685 5.71925 5.74907 5.80132 5.86159 5.98489 6.03534 6.09125 6.11593 6.17999 6.37686 6.44820 6.52518 6.59958 6.75034 6.80045 7.07764 7.14276 7.41717 7.64008 7.70040 7.87192 8.23260 8.47864 8.91669 9.49427 11.00075 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.021961 B = 0.003515 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.663987 B = 7963.219578 C = 8850.105600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.079 0.921 4 C -0.120 4.120 5 C -0.136 4.136 6 C 0.138 3.862 7 H 0.095 0.905 8 N -0.698 5.698 9 C 0.512 3.488 10 O -0.514 6.514 11 C 0.494 3.506 12 O -0.532 6.532 13 N -0.570 5.570 14 C 0.071 3.929 15 C -0.136 4.136 16 C -0.103 4.103 17 C 0.006 3.994 18 H 0.031 0.969 19 C -0.515 4.515 20 H 0.078 0.922 21 C 0.072 3.928 22 N -0.895 5.895 23 Si 0.879 3.121 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.261 1.261 27 C 0.098 3.902 28 C -0.127 4.127 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.412 0.588 37 H 0.066 0.934 38 H 0.130 0.870 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.265 0.735 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.033 21.153 -9.489 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.158 4.158 5 C -0.175 4.175 6 C 0.034 3.966 7 H 0.113 0.887 8 N -0.351 5.351 9 C 0.295 3.705 10 O -0.391 6.391 11 C 0.275 3.725 12 O -0.409 6.409 13 N -0.302 5.302 14 C -0.050 4.050 15 C -0.174 4.174 16 C -0.140 4.140 17 C -0.014 4.014 18 H 0.049 0.951 19 C -0.553 4.553 20 H 0.096 0.904 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.709 3.291 24 H -0.201 1.201 25 H -0.222 1.222 26 H -0.186 1.186 27 C -0.022 4.022 28 C -0.165 4.165 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.249 0.751 37 H 0.084 0.916 38 H 0.147 0.853 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.885 21.063 -9.563 25.565 hybrid contribution -1.235 -0.436 -0.055 1.311 sum -12.120 20.627 -9.619 25.786 Atomic orbital electron populations 1.21761 0.94614 1.02050 1.01753 1.22074 0.95685 0.99236 0.94430 0.90238 1.22444 0.95811 0.99857 0.97660 1.22595 0.97499 1.02600 0.94813 1.21761 0.97517 0.83397 0.93916 0.88686 1.46043 1.07596 1.16173 1.65328 1.20501 0.83437 0.88178 0.78431 1.90475 1.43956 1.55053 1.49575 1.19989 0.84136 0.87819 0.80514 1.90747 1.44968 1.52357 1.52876 1.48373 1.06423 1.11408 1.64023 1.22876 0.89831 0.94573 0.97731 1.22076 0.99625 0.98857 0.96855 1.21472 0.98633 0.92603 1.01316 1.19482 0.93612 0.96612 0.91661 0.95053 1.20963 0.95743 0.89425 1.49215 0.90355 1.25060 0.98812 0.95030 0.94165 1.69892 1.34841 0.99843 1.48695 0.86985 0.85336 0.78448 0.78351 1.20084 1.22236 1.18609 1.22815 1.00688 0.78354 1.00369 1.22743 0.94554 1.00636 0.98558 0.92473 0.92563 0.92512 0.91458 0.91360 0.90849 0.91063 0.75149 0.91595 0.85260 0.92277 0.91529 0.92220 0.92472 0.92493 0.90280 0.90873 0.90513 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.29 37.16 0.35 -0.46 16 2 C -0.10 -0.59 3.49 -88.61 -0.31 -0.90 16 3 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.12 -0.83 6.27 -25.07 -0.16 -0.99 16 5 C -0.14 -1.20 6.58 -25.61 -0.17 -1.37 16 6 C 0.14 1.30 3.22 -66.81 -0.22 1.09 16 7 H 0.10 0.97 7.61 -51.93 -0.40 0.57 16 8 N -0.70 -8.34 4.98 -53.15 -0.26 -8.61 16 9 C 0.51 7.83 7.73 -11.59 -0.09 7.74 16 10 O -0.51 -8.10 12.86 5.50 0.07 -8.03 16 11 C 0.49 9.35 7.73 -11.59 -0.09 9.26 16 12 O -0.53 -11.41 15.93 5.50 0.09 -11.32 16 13 N -0.57 -11.16 2.97 -173.02 -0.51 -11.67 16 14 C 0.07 1.17 6.01 -3.49 -0.02 1.15 16 15 C -0.14 -2.20 6.10 -26.39 -0.16 -2.36 16 16 C -0.10 -2.00 5.11 -26.69 -0.14 -2.13 16 17 C 0.01 0.14 1.84 -91.65 -0.17 -0.03 16 18 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 19 C -0.52 -14.35 9.15 -34.44 -0.31 -14.66 16 20 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 21 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 22 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 23 Si 0.88 23.05 24.32 -169.99 -4.13 18.92 16 24 H -0.27 -7.19 6.92 56.52 0.39 -6.80 16 25 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 26 H -0.26 -6.85 6.53 56.52 0.37 -6.48 16 27 C 0.10 2.22 5.12 -3.71 -0.02 2.20 16 28 C -0.13 -0.91 5.98 -25.06 -0.15 -1.06 16 29 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 36 H 0.41 4.67 7.83 -40.82 -0.32 4.35 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.13 2.05 4.30 -54.84 -0.24 1.81 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.08 1.98 2.32 -51.93 -0.12 1.86 16 45 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 46 H 0.08 0.55 7.63 -51.93 -0.40 0.15 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -32.00 359.62 -8.08 -40.07 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.76 Total: 2.39 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.75 Total: -0.53 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.00 Total: -46.92 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.16 Total: -19.35 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.13 Total: 18.92 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.00 -8.08 -40.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262128708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.828 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds