Wall clock time and date at job start Tue Mar 31 2020 09:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36931 * 120.00010 * 2 1 4 4 H 1.07997 * 120.00080 * 162.56531 * 3 2 1 5 5 C 1.38815 * 119.99989 * 342.55807 * 3 2 1 6 6 N 1.31615 * 120.00027 * 345.23209 * 5 3 2 7 7 Si 1.86797 * 119.99669 * 165.23116 * 5 3 2 8 8 H 1.48496 * 109.47239 * 90.00612 * 7 5 3 9 9 H 1.48505 * 109.46921 * 209.99983 * 7 5 3 10 10 H 1.48494 * 109.47551 * 330.00170 * 7 5 3 11 11 C 1.46503 * 119.99599 * 180.27170 * 2 1 3 12 12 H 1.08996 * 110.88330 * 180.43016 * 11 2 1 13 13 C 1.55163 * 111.00367 * 304.30758 * 11 2 1 14 14 C 1.54320 * 102.93800 * 153.57976 * 13 11 2 15 15 N 1.47023 * 107.27352 * 337.80333 * 14 13 11 16 16 C 1.34776 * 125.64641 * 178.99640 * 15 14 13 17 17 O 1.21287 * 119.99899 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00176 * 359.97438 * 16 15 14 19 19 C 1.54057 * 111.89353 * 298.98151 * 18 16 15 20 20 C 1.54896 * 104.08810 * 262.44875 * 19 18 16 21 21 C 1.54794 * 102.73889 * 321.32779 * 20 19 18 22 22 C 1.54311 * 104.51951 * 37.61388 * 21 20 19 23 23 H 1.08992 * 110.58946 * 98.82557 * 22 21 20 24 24 O 1.43830 * 109.37927 * 222.46594 * 22 21 20 25 25 C 1.44307 * 107.21412 * 140.68135 * 24 22 21 26 26 C 1.54610 * 111.94407 * 61.80139 * 18 16 15 27 27 C 1.47465 * 108.72279 * 358.98011 * 15 14 13 28 28 H 1.09003 * 109.46941 * 84.87692 * 1 2 3 29 29 H 1.09006 * 109.47398 * 204.87727 * 1 2 3 30 30 H 1.08996 * 109.47070 * 324.87697 * 1 2 3 31 31 H 0.96999 * 120.00131 * 179.97438 * 6 5 3 32 32 H 1.09001 * 110.71690 * 271.93970 * 13 11 2 33 33 H 1.08997 * 110.72260 * 35.21515 * 13 11 2 34 34 H 1.08997 * 109.88407 * 97.22611 * 14 13 11 35 35 H 1.09004 * 109.88026 * 218.38460 * 14 13 11 36 36 H 1.09001 * 110.50574 * 21.09718 * 19 18 16 37 37 H 1.08999 * 110.51233 * 143.66002 * 19 18 16 38 38 H 1.09002 * 110.75824 * 79.64092 * 20 19 18 39 39 H 1.09004 * 110.76100 * 203.01014 * 20 19 18 40 40 H 1.09008 * 110.42860 * 156.36648 * 21 20 19 41 41 H 1.08994 * 110.42899 * 278.72801 * 21 20 19 42 42 H 1.08992 * 110.61759 * 78.57140 * 25 24 22 43 43 H 1.09005 * 110.61415 * 201.40897 * 25 24 22 44 44 H 1.08998 * 110.91194 * 217.85106 * 26 18 16 45 45 H 1.09001 * 110.90911 * 341.45969 * 26 18 16 46 46 H 1.09005 * 110.34778 * 265.25372 * 27 15 14 47 47 H 1.08994 * 110.40804 * 142.91385 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1925 1.2073 0.2802 5 6 1.5035 2.3604 -0.3603 6 7 0.3400 2.3099 -0.9735 7 14 2.2853 4.0125 0.0251 8 1 3.1457 4.4301 -1.1108 9 1 1.2210 5.0260 0.2384 10 1 3.1105 3.8951 1.2541 11 6 2.1975 -1.2688 -0.0060 12 1 3.2736 -1.0962 0.0024 13 6 1.7684 -2.1643 1.1863 14 6 2.0584 -3.5893 0.6700 15 7 2.0742 -3.5267 -0.7988 16 6 2.3133 -4.5631 -1.6267 17 8 2.3006 -4.3952 -2.8278 18 6 2.5964 -5.9305 -1.0599 19 6 3.8598 -5.9366 -0.1784 20 6 4.9748 -6.4534 -1.1212 21 6 4.2488 -7.5473 -1.9411 22 6 2.8316 -6.9817 -2.1711 23 1 2.7528 -6.5365 -3.1628 24 8 1.8630 -8.0266 -1.9744 25 6 0.7360 -7.4408 -1.2895 26 6 1.4042 -6.4738 -0.2390 27 6 1.7847 -2.1425 -1.2168 28 1 -0.3633 0.0918 -1.0236 29 1 -0.3634 -0.9323 0.4323 30 1 -0.3633 0.8405 0.5912 31 1 -0.1117 3.1306 -1.2250 32 1 2.3686 -1.9444 2.0692 33 1 0.7068 -2.0400 1.3995 34 1 3.0277 -3.9265 1.0371 35 1 1.2759 -4.2709 1.0036 36 1 4.0890 -4.9287 0.1675 37 1 3.7310 -6.6100 0.6690 38 1 5.3309 -5.6550 -1.7723 39 1 5.7973 -6.8818 -0.5484 40 1 4.7538 -7.7068 -2.8939 41 1 4.2018 -8.4781 -1.3759 42 1 0.1108 -6.8831 -1.9866 43 1 0.1525 -8.2099 -0.7832 44 1 1.7523 -7.0206 0.6373 45 1 0.7309 -5.6668 0.0500 46 1 0.7213 -2.0240 -1.4250 47 1 2.3756 -1.8788 -2.0938 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971925310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:28 Heat of formation + Delta-G solvation = -65.829738 kcal Electronic energy + Delta-G solvation = -27181.485462 eV Core-core repulsion = 23557.199902 eV Total energy + Delta-G solvation = -3624.285561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.23477 -40.18244 -38.71268 -36.70815 -36.39854 -33.78276 -32.82914 -31.22239 -29.55718 -28.86489 -28.19846 -28.04961 -25.53234 -24.22607 -23.32162 -22.15026 -21.65720 -20.94858 -19.97438 -18.97894 -18.02734 -17.61805 -17.29263 -17.12492 -16.41132 -16.35748 -15.81467 -15.45437 -15.20114 -15.04487 -14.87823 -14.55579 -14.38979 -14.20123 -13.89269 -13.59660 -13.34758 -13.22184 -13.04539 -12.78415 -12.64334 -12.55321 -12.41860 -12.33072 -12.13587 -12.10483 -11.98137 -11.90956 -11.79781 -11.75227 -11.51075 -11.33280 -10.88332 -10.63694 -10.59979 -9.72046 -8.87471 -7.85318 -5.30157 1.46961 1.47622 1.48447 1.57840 1.83924 2.50782 2.70282 3.26044 3.29749 3.37455 3.50223 3.55367 3.77225 3.89370 3.91303 4.04409 4.12249 4.18859 4.20987 4.30622 4.33005 4.41249 4.45102 4.55229 4.60675 4.72437 4.76022 4.78517 4.80279 4.86593 4.92127 4.96665 5.01395 5.05036 5.10085 5.17419 5.19854 5.22078 5.31745 5.36658 5.43010 5.61396 5.72147 5.86869 6.27592 6.49794 7.02755 7.11701 7.83169 8.24870 9.18202 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.028115 B = 0.003326 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.662259 B = 8417.461636 C = 8622.127826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.602 5.602 3 C -0.266 4.266 4 H 0.078 0.922 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.970 3.030 8 H -0.289 1.289 9 H -0.295 1.295 10 H -0.265 1.265 11 C 0.167 3.833 12 H 0.075 0.925 13 C -0.140 4.140 14 C 0.098 3.902 15 N -0.606 5.606 16 C 0.537 3.463 17 O -0.594 6.594 18 C -0.108 4.108 19 C -0.108 4.108 20 C -0.123 4.123 21 C -0.117 4.117 22 C 0.082 3.918 23 H 0.058 0.942 24 O -0.383 6.383 25 C 0.038 3.962 26 C -0.134 4.134 27 C 0.096 3.904 28 H -0.007 1.007 29 H 0.036 0.964 30 H 0.024 0.976 31 H 0.248 0.752 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.050 0.950 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.040 0.960 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.089 0.911 46 H 0.047 0.953 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.561 -21.717 8.346 23.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.323 5.323 3 C -0.396 4.396 4 H 0.096 0.904 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.798 3.202 8 H -0.216 1.216 9 H -0.221 1.221 10 H -0.190 1.190 11 C 0.058 3.942 12 H 0.093 0.907 13 C -0.179 4.179 14 C -0.023 4.023 15 N -0.338 5.338 16 C 0.326 3.674 17 O -0.475 6.475 18 C -0.112 4.112 19 C -0.145 4.145 20 C -0.160 4.160 21 C -0.155 4.155 22 C 0.023 3.977 23 H 0.076 0.924 24 O -0.302 6.302 25 C -0.038 4.038 26 C -0.172 4.172 27 C -0.030 4.030 28 H 0.011 0.989 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.059 0.941 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.479 -21.746 7.585 23.674 hybrid contribution -0.262 1.887 -0.974 2.140 sum 5.217 -19.860 6.611 21.571 Atomic orbital electron populations 1.20516 0.82461 0.96312 0.97216 1.44115 1.02184 1.00911 1.85061 1.19643 0.95988 0.85452 1.38476 0.90373 1.25725 0.98224 1.01654 0.99285 1.70286 1.18153 1.26812 1.43472 0.85228 0.77180 0.79557 0.78193 1.21637 1.22095 1.18999 1.21602 0.95838 0.84648 0.92156 0.90692 1.23086 1.02936 0.92940 0.98947 1.22544 1.04001 0.98211 0.77546 1.48478 1.68602 1.08035 1.08700 1.20484 0.75389 0.86089 0.85392 1.90665 1.54470 1.85138 1.17216 1.22512 1.00629 0.90307 0.97704 1.22665 0.90707 1.03420 0.97701 1.22540 0.98303 0.97462 0.97714 1.22505 0.91779 0.99806 1.01369 1.23371 0.90867 0.86489 0.96939 0.92374 1.88815 1.29240 1.32902 1.79242 1.24201 0.89125 0.97351 0.93111 1.23884 0.95062 0.99547 0.98666 1.22730 0.99238 0.81478 0.99558 0.98866 0.94611 0.95677 0.94316 0.88291 0.90803 0.88164 0.88664 0.90365 0.86568 0.93089 0.87901 0.91096 0.88699 0.94122 0.85836 0.85575 0.89272 0.93488 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.66 7.70 127.77 0.98 9.64 16 2 N -0.60 -28.90 2.97 -695.00 -2.06 -30.96 16 3 C -0.27 -14.17 9.68 84.04 0.81 -13.36 16 4 H 0.08 3.98 7.81 -2.91 -0.02 3.96 16 5 C -0.05 -2.99 5.08 84.86 0.43 -2.56 16 6 N -0.94 -55.51 10.49 21.65 0.23 -55.28 16 7 Si 0.97 44.44 29.58 68.60 2.03 46.47 16 8 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 9 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 11 C 0.17 6.28 3.54 46.38 0.16 6.45 16 12 H 0.07 2.85 7.91 -2.39 -0.02 2.83 16 13 C -0.14 -3.72 6.49 31.78 0.21 -3.51 16 14 C 0.10 2.04 5.57 86.73 0.48 2.52 16 15 N -0.61 -18.20 3.25 -811.69 -2.63 -20.83 16 16 C 0.54 17.00 6.63 87.66 0.58 17.58 16 17 O -0.59 -24.93 15.73 -3.05 -0.05 -24.98 16 18 C -0.11 -2.35 0.45 -51.42 -0.02 -2.37 16 19 C -0.11 -1.63 5.30 31.60 0.17 -1.46 16 20 C -0.12 -1.96 6.90 31.85 0.22 -1.74 16 21 C -0.12 -2.14 6.55 31.65 0.21 -1.94 16 22 C 0.08 2.01 3.87 31.64 0.12 2.14 16 23 H 0.06 1.88 6.74 -2.39 -0.02 1.86 16 24 O -0.38 -9.21 11.09 -148.98 -1.65 -10.87 16 25 C 0.04 0.73 7.80 73.63 0.57 1.31 16 26 C -0.13 -2.12 5.75 32.79 0.19 -1.93 16 27 C 0.10 3.72 6.49 86.85 0.56 4.28 16 28 H -0.01 -0.38 7.48 -2.39 -0.02 -0.40 16 29 H 0.04 1.43 6.18 -2.38 -0.01 1.42 16 30 H 0.02 1.30 7.00 -2.39 -0.02 1.29 16 31 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.07 2.07 6.18 -2.39 -0.01 2.05 16 34 H 0.10 1.54 5.73 -2.39 -0.01 1.53 16 35 H 0.10 1.49 5.95 -2.38 -0.01 1.48 16 36 H 0.08 1.23 5.48 -2.39 -0.01 1.22 16 37 H 0.12 1.03 7.23 -2.39 -0.02 1.01 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.09 1.46 8.03 -2.39 -0.02 1.44 16 42 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.13 1.16 7.24 -2.39 -0.02 1.14 16 45 H 0.09 1.41 5.76 -2.39 -0.01 1.40 16 46 H 0.05 2.01 7.19 -2.38 -0.02 1.99 16 47 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 Total: -1.00 -72.54 349.33 2.51 -70.03 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.97 Total: 11.39 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 5.68 Total: 15.04 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -4.47 Total: -107.08 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.70 Total: -35.85 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -72.54 2.51 -70.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971925310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.199 kcal (2) G-P(sol) polarization free energy of solvation -72.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds