Wall clock time and date at job start Tue Mar 31 2020 09:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42905 * 113.99873 * 2 1 4 4 C 1.53786 * 113.61467 * 110.86351 * 3 2 1 5 5 C 1.53962 * 87.01719 * 89.22967 * 4 3 2 6 6 C 1.50699 * 113.66451 * 139.93336 * 5 4 3 7 7 O 1.21275 * 119.99992 * 262.44274 * 6 5 4 8 8 N 1.34783 * 119.99545 * 82.44116 * 6 5 4 9 9 C 1.46506 * 119.99378 * 180.02562 * 8 6 5 10 10 C 1.53586 * 112.23803 * 297.64048 * 9 8 6 11 11 C 1.55467 * 106.05676 * 238.16969 * 10 9 8 12 12 C 1.54759 * 104.36121 * 335.35848 * 11 10 9 13 13 C 1.54776 * 103.21360 * 37.68431 * 12 11 10 14 14 H 1.08996 * 112.61693 * 85.33640 * 13 12 11 15 15 N 1.46976 * 108.68698 * 209.79872 * 13 12 11 16 16 C 1.36933 * 125.58043 * 294.13299 * 15 13 12 17 17 H 1.08006 * 119.99970 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00502 * 179.97438 * 16 15 13 19 19 N 1.31627 * 119.99885 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00578 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47158 * 89.99872 * 20 18 16 22 22 H 1.48494 * 109.47198 * 210.00270 * 20 18 16 23 23 H 1.48504 * 109.46973 * 330.00204 * 20 18 16 24 24 C 1.47375 * 108.84279 * 114.13423 * 15 13 12 25 25 C 1.54867 * 104.81834 * 335.30594 * 24 15 13 26 26 C 1.53781 * 113.61505 * 208.47211 * 3 2 1 27 27 H 1.09004 * 109.47361 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47438 * 299.99783 * 1 2 3 29 29 H 1.09002 * 109.47642 * 59.99603 * 1 2 3 30 30 H 1.09002 * 112.84917 * 339.66862 * 3 2 1 31 31 H 1.08993 * 113.61491 * 203.75088 * 4 3 2 32 32 H 1.09000 * 113.61138 * 334.65426 * 4 3 2 33 33 H 1.09002 * 113.61454 * 270.79954 * 5 4 3 34 34 H 0.96987 * 120.00362 * 359.97438 * 8 6 5 35 35 H 1.08996 * 110.01835 * 358.14241 * 10 9 8 36 36 H 1.09000 * 110.01738 * 119.53484 * 10 9 8 37 37 H 1.09001 * 110.50355 * 216.57317 * 11 10 9 38 38 H 1.08996 * 110.28497 * 94.04328 * 11 10 9 39 39 H 1.08997 * 110.67480 * 279.25114 * 12 11 10 40 40 H 1.09007 * 110.81149 * 156.18086 * 12 11 10 41 41 H 0.96997 * 119.99804 * 180.02562 * 19 18 16 42 42 H 1.08998 * 110.36895 * 216.46678 * 24 15 13 43 43 H 1.09003 * 110.36500 * 94.13663 * 24 15 13 44 44 H 1.09005 * 110.96446 * 278.95443 * 25 24 15 45 45 H 1.08998 * 110.96388 * 155.19256 * 25 24 15 46 46 H 1.09001 * 113.61695 * 25.34840 * 26 3 2 47 47 H 1.08997 * 113.61223 * 156.25423 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 2.7191 1.6642 1.3167 5 6 3.9896 1.0427 0.7083 6 6 5.2473 1.8137 1.0164 7 8 5.6913 2.5987 0.2056 8 7 5.8786 1.6307 2.1931 9 6 7.1010 2.3806 2.4928 10 6 8.2371 2.0565 1.5114 11 6 9.4164 1.5309 2.3773 12 6 9.1732 2.1511 3.7742 13 6 7.6334 2.0971 3.9220 14 1 7.2824 1.1386 4.3043 15 7 7.2025 3.2154 4.7729 16 6 7.5016 3.3677 6.1004 17 1 8.1025 2.6269 6.6071 18 6 7.0325 4.4741 6.7952 19 7 6.2997 5.3767 6.1779 20 14 7.4411 4.6823 8.6060 21 1 8.7084 5.4441 8.7431 22 1 6.3435 5.4220 9.2792 23 1 7.5962 3.3461 9.2352 24 6 6.3958 4.1460 3.9634 25 6 6.8641 3.9114 2.5060 26 6 3.3922 1.3645 -0.6717 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.3218 2.0753 -0.3490 31 1 2.7986 2.7371 1.4916 32 1 2.3367 1.1206 2.1806 33 1 4.0894 -0.0252 0.9027 34 1 5.5233 1.0032 2.8417 35 1 7.9102 1.2989 0.7993 36 1 8.5421 2.9594 0.9824 37 1 10.3693 1.8692 1.9703 38 1 9.3888 0.4427 2.4328 39 1 9.5267 3.1817 3.8046 40 1 9.6553 1.5573 4.5509 41 1 5.9722 6.1500 6.6633 42 1 6.5899 5.1758 4.2633 43 1 5.3354 3.9142 4.0631 44 1 7.7890 4.4510 2.3019 45 1 6.0857 4.1920 1.7964 46 1 3.5525 0.5794 -1.4107 47 1 3.6560 2.3554 -1.0414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991248708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:26 Heat of formation + Delta-G solvation = -31.351759 kcal Electronic energy + Delta-G solvation = -26895.614906 eV Core-core repulsion = 23272.824423 eV Total energy + Delta-G solvation = -3622.790483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53117 -39.36104 -37.77002 -35.57579 -34.19929 -33.28577 -31.39597 -29.80327 -27.39552 -26.68283 -26.38627 -25.80425 -25.07120 -23.80435 -21.49265 -20.16441 -19.93276 -19.12676 -18.71524 -17.40341 -16.99236 -16.19827 -15.74200 -15.60263 -15.38660 -14.91582 -14.67828 -14.27170 -14.03397 -13.63197 -13.42652 -13.13719 -12.77331 -12.57546 -12.32594 -12.18041 -12.01861 -11.75084 -11.63726 -11.50811 -11.12927 -10.98673 -10.84083 -10.79691 -10.64915 -10.53528 -10.48110 -10.13360 -10.03875 -9.91570 -9.75867 -9.67808 -9.58712 -9.14362 -8.64558 -8.46613 -6.84153 -5.63819 -3.06887 2.93630 3.39276 3.42671 3.44470 3.46269 3.54383 4.39716 4.47668 4.51783 4.67588 4.79681 4.94050 5.07843 5.14862 5.18355 5.24304 5.30896 5.39390 5.40626 5.53248 5.67726 5.68777 5.70961 5.84680 5.88875 5.90121 5.97875 6.03290 6.09477 6.12578 6.17740 6.32950 6.39733 6.45229 6.57131 6.63259 6.81404 6.82944 7.00067 7.03219 7.19147 7.56332 7.65691 7.87130 7.94362 8.37849 8.61002 9.22432 9.83491 10.47994 11.38648 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.003947 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.968709 B = 7093.129794 C = 8274.753615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.061 3.939 4 C -0.141 4.141 5 C -0.130 4.130 6 C 0.522 3.478 7 O -0.541 6.541 8 N -0.703 5.703 9 C 0.159 3.841 10 C -0.110 4.110 11 C -0.124 4.124 12 C -0.128 4.128 13 C 0.162 3.838 14 H 0.046 0.954 15 N -0.596 5.596 16 C -0.220 4.220 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.920 5.920 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.153 3.847 25 C -0.142 4.142 26 C -0.114 4.114 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.398 0.602 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.251 0.749 42 H 0.107 0.893 43 H 0.008 0.992 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.784 -9.801 -12.143 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C 0.002 3.998 4 C -0.179 4.179 5 C -0.152 4.152 6 C 0.308 3.692 7 O -0.418 6.418 8 N -0.353 5.353 9 C 0.073 3.927 10 C -0.149 4.149 11 C -0.162 4.162 12 C -0.169 4.169 13 C 0.054 3.946 14 H 0.063 0.937 15 N -0.320 5.320 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.208 1.208 24 C 0.029 3.971 25 C -0.181 4.181 26 C -0.151 4.151 27 H 0.104 0.896 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.232 0.768 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.125 0.875 43 H 0.026 0.974 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.419 -9.236 -12.518 16.829 hybrid contribution -0.240 -0.068 1.404 1.426 sum -6.658 -9.304 -11.114 15.950 Atomic orbital electron populations 1.22807 0.80958 1.02712 1.00105 1.87871 1.19699 1.26684 1.94600 1.23110 0.94763 0.85054 0.96833 1.23407 0.94396 1.02002 0.98080 1.22721 0.92498 1.00883 0.99053 1.20360 0.84633 0.82621 0.81596 1.90652 1.66726 1.36755 1.47671 1.45938 1.27006 1.44095 1.18227 1.21653 0.83313 0.93094 0.94652 1.22486 0.94442 1.01087 0.96917 1.22569 0.97599 0.99582 0.96487 1.22914 0.97927 1.01226 0.94796 1.21790 0.92504 0.92290 0.88066 0.93675 1.44529 1.59813 1.20996 1.06653 1.19038 1.26727 1.05230 0.83787 0.90549 1.24775 1.00098 0.97410 0.98308 1.69812 1.39890 1.12787 1.34410 0.86103 0.77400 0.77580 0.84590 1.21640 1.21751 1.20800 1.21960 0.92140 0.98402 0.84636 1.23322 1.01437 0.92895 1.00455 1.23070 0.92581 1.03909 0.95566 0.89639 0.93863 0.93982 0.90475 0.88574 0.90057 0.86991 0.76752 0.92261 0.91313 0.92311 0.92414 0.90748 0.92369 0.93807 0.87546 0.97413 0.91573 0.91427 0.90350 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.33 16 2 O -0.37 -3.96 10.63 -35.23 -0.37 -4.34 16 3 C 0.06 0.62 4.36 -25.92 -0.11 0.51 16 4 C -0.14 -1.61 7.48 -25.82 -0.19 -1.80 16 5 C -0.13 -1.60 4.08 -90.86 -0.37 -1.97 16 6 C 0.52 8.14 6.55 -10.98 -0.07 8.07 16 7 O -0.54 -10.00 13.71 5.56 0.08 -9.92 16 8 N -0.70 -11.25 5.22 -45.35 -0.24 -11.48 16 9 C 0.16 2.89 0.74 -129.37 -0.10 2.80 16 10 C -0.11 -1.83 5.41 -25.12 -0.14 -1.97 16 11 C -0.12 -1.89 6.87 -24.49 -0.17 -2.06 16 12 C -0.13 -2.35 6.22 -24.87 -0.15 -2.50 16 13 C 0.16 3.24 3.67 -65.61 -0.24 3.00 16 14 H 0.05 0.89 7.96 -51.93 -0.41 0.48 16 15 N -0.60 -14.67 3.03 -161.13 -0.49 -15.16 16 16 C -0.22 -5.92 10.01 -15.06 -0.15 -6.07 16 17 H 0.08 2.00 7.83 -52.48 -0.41 1.58 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -26.59 10.07 55.49 0.56 -26.03 16 20 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 C 0.15 3.75 5.91 -2.58 -0.02 3.74 16 25 C -0.14 -2.94 5.71 -24.74 -0.14 -3.08 16 26 C -0.11 -1.29 7.24 -25.92 -0.19 -1.47 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.69 7.88 -51.93 -0.41 0.28 16 31 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.40 5.75 8.48 -40.82 -0.35 5.41 16 35 H 0.06 0.96 7.58 -51.93 -0.39 0.57 16 36 H 0.07 1.18 7.37 -51.93 -0.38 0.80 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.11 2.96 5.82 -51.93 -0.30 2.66 16 43 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 44 H 0.07 1.38 7.63 -51.93 -0.40 0.98 16 45 H 0.07 1.42 6.53 -51.93 -0.34 1.08 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.11 1.30 7.43 -51.93 -0.39 0.92 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -30.77 364.56 -9.02 -39.79 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.98 Total: 6.70 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.04 Total: -1.86 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.17 Total: -52.67 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.30 Total: -14.26 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.77 -9.02 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991248708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.438 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds