Wall clock time and date at job start Tue Mar 31 2020 09:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42905 * 113.99873 * 2 1 4 4 C 1.53786 * 113.61467 * 110.86351 * 3 2 1 5 5 C 1.53962 * 87.01719 * 89.22967 * 4 3 2 6 6 C 1.50699 * 113.66451 * 139.93336 * 5 4 3 7 7 O 1.21275 * 119.99992 * 262.44274 * 6 5 4 8 8 N 1.34783 * 119.99545 * 82.44116 * 6 5 4 9 9 C 1.46506 * 119.99378 * 180.02562 * 8 6 5 10 10 C 1.53586 * 112.23803 * 297.64048 * 9 8 6 11 11 C 1.55467 * 106.05676 * 238.16969 * 10 9 8 12 12 C 1.54759 * 104.36121 * 335.35848 * 11 10 9 13 13 C 1.54776 * 103.21360 * 37.68431 * 12 11 10 14 14 H 1.08996 * 112.61693 * 85.33640 * 13 12 11 15 15 N 1.46976 * 108.68698 * 209.79872 * 13 12 11 16 16 C 1.36933 * 125.58043 * 294.13299 * 15 13 12 17 17 H 1.08006 * 119.99970 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00502 * 179.97438 * 16 15 13 19 19 N 1.31627 * 119.99885 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00578 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47158 * 89.99872 * 20 18 16 22 22 H 1.48494 * 109.47198 * 210.00270 * 20 18 16 23 23 H 1.48504 * 109.46973 * 330.00204 * 20 18 16 24 24 C 1.47375 * 108.84279 * 114.13423 * 15 13 12 25 25 C 1.54867 * 104.81834 * 335.30594 * 24 15 13 26 26 C 1.53781 * 113.61505 * 208.47211 * 3 2 1 27 27 H 1.09004 * 109.47361 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47438 * 299.99783 * 1 2 3 29 29 H 1.09002 * 109.47642 * 59.99603 * 1 2 3 30 30 H 1.09002 * 112.84917 * 339.66862 * 3 2 1 31 31 H 1.08993 * 113.61491 * 203.75088 * 4 3 2 32 32 H 1.09000 * 113.61138 * 334.65426 * 4 3 2 33 33 H 1.09002 * 113.61454 * 270.79954 * 5 4 3 34 34 H 0.96987 * 120.00362 * 359.97438 * 8 6 5 35 35 H 1.08996 * 110.01835 * 358.14241 * 10 9 8 36 36 H 1.09000 * 110.01738 * 119.53484 * 10 9 8 37 37 H 1.09001 * 110.50355 * 216.57317 * 11 10 9 38 38 H 1.08996 * 110.28497 * 94.04328 * 11 10 9 39 39 H 1.08997 * 110.67480 * 279.25114 * 12 11 10 40 40 H 1.09007 * 110.81149 * 156.18086 * 12 11 10 41 41 H 0.96997 * 119.99804 * 180.02562 * 19 18 16 42 42 H 1.08998 * 110.36895 * 216.46678 * 24 15 13 43 43 H 1.09003 * 110.36500 * 94.13663 * 24 15 13 44 44 H 1.09005 * 110.96446 * 278.95443 * 25 24 15 45 45 H 1.08998 * 110.96388 * 155.19256 * 25 24 15 46 46 H 1.09001 * 113.61695 * 25.34840 * 26 3 2 47 47 H 1.08997 * 113.61223 * 156.25423 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 2.7191 1.6642 1.3167 5 6 3.9896 1.0427 0.7083 6 6 5.2473 1.8137 1.0164 7 8 5.6913 2.5987 0.2056 8 7 5.8786 1.6307 2.1931 9 6 7.1010 2.3806 2.4928 10 6 8.2371 2.0565 1.5114 11 6 9.4164 1.5309 2.3773 12 6 9.1732 2.1511 3.7742 13 6 7.6334 2.0971 3.9220 14 1 7.2824 1.1386 4.3043 15 7 7.2025 3.2154 4.7729 16 6 7.5016 3.3677 6.1004 17 1 8.1025 2.6269 6.6071 18 6 7.0325 4.4741 6.7952 19 7 6.2997 5.3767 6.1779 20 14 7.4411 4.6823 8.6060 21 1 8.7084 5.4441 8.7431 22 1 6.3435 5.4220 9.2792 23 1 7.5962 3.3461 9.2352 24 6 6.3958 4.1460 3.9634 25 6 6.8641 3.9114 2.5060 26 6 3.3922 1.3645 -0.6717 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.3218 2.0753 -0.3490 31 1 2.7986 2.7371 1.4916 32 1 2.3367 1.1206 2.1806 33 1 4.0894 -0.0252 0.9027 34 1 5.5233 1.0032 2.8417 35 1 7.9102 1.2989 0.7993 36 1 8.5421 2.9594 0.9824 37 1 10.3693 1.8692 1.9703 38 1 9.3888 0.4427 2.4328 39 1 9.5267 3.1817 3.8046 40 1 9.6553 1.5573 4.5509 41 1 5.9722 6.1500 6.6633 42 1 6.5899 5.1758 4.2633 43 1 5.3354 3.9142 4.0631 44 1 7.7890 4.4510 2.3019 45 1 6.0857 4.1920 1.7964 46 1 3.5525 0.5794 -1.4107 47 1 3.6560 2.3554 -1.0414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991248708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:25 Heat of formation + Delta-G solvation = -50.666366 kcal Electronic energy + Delta-G solvation = -26896.452450 eV Core-core repulsion = 23272.824423 eV Total energy + Delta-G solvation = -3623.628028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.79196 -40.57679 -38.99919 -36.50039 -35.97779 -34.65470 -33.29676 -31.52993 -28.41085 -28.39311 -27.44605 -26.72749 -26.19862 -25.70162 -22.85601 -21.72669 -21.33467 -20.26977 -20.15987 -18.89299 -18.54933 -17.28571 -17.00877 -16.83770 -16.57909 -16.27744 -15.90072 -15.70328 -15.28323 -15.12186 -14.77186 -14.55983 -14.34105 -13.90012 -13.53052 -13.43429 -13.30640 -13.07918 -12.95407 -12.86241 -12.72924 -12.65672 -12.30931 -12.28582 -12.01945 -11.91422 -11.69514 -11.68980 -11.55865 -11.46111 -11.39063 -11.24762 -10.71868 -10.61415 -10.39050 -9.89994 -8.85849 -7.73241 -5.18080 1.48005 1.49357 1.57691 1.69429 2.24524 2.51625 2.70989 3.36052 3.38266 3.48558 3.59911 3.65334 3.75317 3.92308 3.97681 3.98704 4.27064 4.34999 4.37471 4.42836 4.47918 4.57253 4.58112 4.60216 4.67635 4.75850 4.80047 4.81312 4.88671 4.92136 4.98146 4.99958 5.08234 5.09620 5.17956 5.22230 5.23222 5.32351 5.48367 5.52002 5.65245 5.73584 5.85229 6.27480 6.31479 6.66110 7.12598 7.34582 7.81004 8.45303 9.28083 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.003947 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.968709 B = 7093.129794 C = 8274.753615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.386 6.386 3 C 0.072 3.928 4 C -0.142 4.142 5 C -0.126 4.126 6 C 0.521 3.479 7 O -0.571 6.571 8 N -0.702 5.702 9 C 0.168 3.832 10 C -0.104 4.104 11 C -0.109 4.109 12 C -0.124 4.124 13 C 0.154 3.846 14 H 0.056 0.944 15 N -0.611 5.611 16 C -0.225 4.225 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.951 5.951 20 Si 0.977 3.023 21 H -0.288 1.288 22 H -0.298 1.298 23 H -0.268 1.268 24 C 0.164 3.836 25 C -0.129 4.129 26 C -0.112 4.112 27 H 0.099 0.901 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.407 0.593 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.244 0.756 42 H 0.070 0.930 43 H -0.018 1.018 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 -12.173 -12.722 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.305 6.305 3 C 0.014 3.986 4 C -0.180 4.180 5 C -0.147 4.147 6 C 0.309 3.691 7 O -0.450 6.450 8 N -0.352 5.352 9 C 0.081 3.919 10 C -0.143 4.143 11 C -0.147 4.147 12 C -0.164 4.164 13 C 0.047 3.953 14 H 0.074 0.926 15 N -0.336 5.336 16 C -0.354 4.354 17 H 0.103 0.897 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.806 3.194 21 H -0.216 1.216 22 H -0.225 1.225 23 H -0.193 1.193 24 C 0.039 3.961 25 C -0.169 4.169 26 C -0.150 4.150 27 H 0.117 0.883 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.147 0.853 34 H 0.243 0.757 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.000 1.000 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.233 -11.661 -13.106 18.617 hybrid contribution -0.338 0.660 1.567 1.734 sum -6.571 -11.001 -11.540 17.244 Atomic orbital electron populations 1.23014 0.79371 1.03957 1.00899 1.87843 1.21469 1.26590 1.94591 1.22982 0.94630 0.85606 0.95411 1.23390 0.94317 1.01160 0.99099 1.22796 0.90706 1.01229 0.99934 1.20950 0.85140 0.82218 0.80789 1.90639 1.67680 1.38130 1.48547 1.45924 1.26559 1.43956 1.18770 1.21482 0.84878 0.91172 0.94341 1.22423 0.94166 1.01078 0.96665 1.22504 0.97725 1.00747 0.93722 1.22779 0.96100 1.00243 0.97307 1.22048 0.93961 0.91106 0.88181 0.92602 1.44717 1.59799 1.22438 1.06606 1.19413 1.25934 1.05063 0.84953 0.89744 1.25583 1.00688 0.97512 1.02311 1.70071 1.41321 1.13179 1.35598 0.85093 0.76601 0.77795 0.79946 1.21554 1.22504 1.19302 1.21604 0.90904 0.96594 0.86995 1.23119 1.00760 0.95471 0.97516 1.23032 0.93231 1.03529 0.95211 0.88263 0.93465 0.92804 0.88936 0.89960 0.89586 0.85302 0.75734 0.91384 0.92151 0.90403 0.90006 0.93315 0.91503 0.94636 0.91194 1.00008 0.91967 0.91970 0.89569 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.85 113.37 1.23 1.53 16 2 O -0.39 -7.40 10.63 -148.98 -1.58 -8.99 16 3 C 0.07 1.36 4.36 31.12 0.14 1.50 16 4 C -0.14 -3.10 7.48 31.18 0.23 -2.86 16 5 C -0.13 -2.90 4.08 -10.95 -0.04 -2.94 16 6 C 0.52 15.82 6.55 87.66 0.57 16.40 16 7 O -0.57 -20.88 13.71 -3.01 -0.04 -20.93 16 8 N -0.70 -21.77 5.22 -415.79 -2.17 -23.94 16 9 C 0.17 5.99 0.74 5.18 0.00 6.00 16 10 C -0.10 -3.25 5.41 31.64 0.17 -3.08 16 11 C -0.11 -2.97 6.87 32.04 0.22 -2.75 16 12 C -0.12 -4.34 6.22 31.80 0.20 -4.14 16 13 C 0.15 6.02 3.67 46.24 0.17 6.19 16 14 H 0.06 2.10 7.96 -2.39 -0.02 2.08 16 15 N -0.61 -30.54 3.03 -663.70 -2.01 -32.55 16 16 C -0.22 -12.20 10.01 84.03 0.84 -11.36 16 17 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 18 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 19 N -0.95 -57.02 10.07 21.65 0.22 -56.80 16 20 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C 0.16 8.39 5.91 86.85 0.51 8.90 16 25 C -0.13 -5.49 5.71 31.88 0.18 -5.31 16 26 C -0.11 -2.39 7.24 31.12 0.23 -2.16 16 27 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.09 1.47 7.88 -2.39 -0.02 1.45 16 31 H 0.08 2.04 8.10 -2.39 -0.02 2.02 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.41 11.21 8.48 -92.72 -0.79 10.42 16 35 H 0.07 2.03 7.58 -2.39 -0.02 2.01 16 36 H 0.06 1.99 7.37 -2.39 -0.02 1.98 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.95 8.09 -2.39 -0.02 1.93 16 40 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.24 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.07 4.12 5.82 -2.39 -0.01 4.10 16 43 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 44 H 0.06 2.66 7.63 -2.38 -0.02 2.64 16 45 H 0.06 2.69 6.53 -2.39 -0.02 2.68 16 46 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.10 2.27 7.43 -2.39 -0.02 2.26 16 Total: -1.00 -67.52 364.56 1.73 -65.80 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.17 Total: 27.47 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 5.12 Total: 2.50 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -3.96 Total: -113.29 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.63 Total: -29.91 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -67.52 1.73 -65.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991248708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.133 kcal (2) G-P(sol) polarization free energy of solvation -67.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds