Wall clock time and date at job start Tue Mar 31 2020 09:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42902 * 114.00151 * 2 1 4 4 H 1.09003 * 109.46875 * 28.39759 * 3 2 1 5 5 C 1.50699 * 109.46668 * 148.39394 * 3 2 1 6 6 O 1.21273 * 120.00406 * 6.20064 * 5 3 2 7 7 N 1.34781 * 119.99262 * 186.20137 * 5 3 2 8 8 C 1.46942 * 120.44470 * 5.08332 * 7 5 3 9 9 C 1.53595 * 108.52328 * 125.75532 * 8 7 5 10 10 H 1.09002 * 110.59693 * 172.17187 * 9 8 7 11 11 C 1.53373 * 108.68732 * 294.36603 * 9 8 7 12 12 C 1.52914 * 109.76079 * 61.20957 * 11 9 8 13 13 C 1.53010 * 110.29289 * 59.36904 * 12 11 9 14 14 C 1.53367 * 109.24909 * 300.28038 * 13 12 11 15 15 H 1.08998 * 110.60000 * 177.54577 * 14 13 12 16 16 C 1.46952 * 120.43515 * 184.80945 * 7 5 3 17 17 N 1.47564 * 107.98748 * 56.39060 * 14 13 12 18 18 C 1.36937 * 121.61237 * 121.62367 * 17 14 13 19 19 H 1.07997 * 119.99925 * 33.18941 * 18 17 14 20 20 C 1.38816 * 120.00225 * 213.18396 * 18 17 14 21 21 N 1.31624 * 119.99923 * 9.25772 * 20 18 17 22 22 Si 1.86794 * 120.00024 * 189.25700 * 20 18 17 23 23 H 1.48497 * 109.47460 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47088 * 120.00352 * 22 20 18 25 25 H 1.48505 * 109.47102 * 239.99732 * 22 20 18 26 26 C 1.52995 * 109.46907 * 268.39511 * 3 2 1 27 27 C 1.53000 * 117.50164 * 297.67297 * 26 3 2 28 28 C 1.53005 * 60.02999 * 107.50245 * 27 26 3 29 29 H 1.08998 * 109.46825 * 294.38425 * 1 2 3 30 30 H 1.08998 * 109.47132 * 54.37942 * 1 2 3 31 31 H 1.08992 * 109.47163 * 174.38334 * 1 2 3 32 32 H 1.09006 * 109.62354 * 245.46213 * 8 7 5 33 33 H 1.08996 * 109.62956 * 6.04302 * 8 7 5 34 34 H 1.09000 * 109.50377 * 180.25061 * 11 9 8 35 35 H 1.09007 * 109.50097 * 300.36817 * 11 9 8 36 36 H 1.08997 * 108.46421 * 299.55624 * 12 11 9 37 37 H 1.09000 * 109.86451 * 180.02562 * 12 11 9 38 38 H 1.09000 * 109.50950 * 180.34473 * 13 12 11 39 39 H 1.09003 * 109.54866 * 60.23049 * 13 12 11 40 40 H 1.08998 * 109.62422 * 353.95079 * 16 7 5 41 41 H 1.08998 * 109.61992 * 114.50959 * 16 7 5 42 42 H 0.96996 * 120.00001 * 180.02562 * 21 20 18 43 43 H 1.09000 * 115.54740 * 152.00589 * 26 3 2 44 44 H 1.08998 * 117.50126 * 215.00466 * 27 26 3 45 45 H 1.09007 * 117.49444 * 0.02562 * 27 26 3 46 46 H 1.09006 * 117.49220 * 107.50096 * 28 27 26 47 47 H 1.08999 * 117.50222 * 252.51890 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3055 0.0000 4 1 1.3323 2.0051 0.4888 5 6 3.3201 1.2720 0.7446 6 8 3.7718 0.2146 1.1300 7 7 3.9895 2.4175 0.9823 8 6 3.3998 3.7135 0.6192 9 6 3.3939 4.6129 1.8643 10 1 3.0918 5.6271 1.6032 11 6 2.4450 4.0052 2.9049 12 6 2.9395 2.6149 3.3059 13 6 4.3498 2.7022 3.8930 14 6 5.2979 3.2973 2.8446 15 1 6.3014 3.4097 3.2550 16 6 5.3162 2.3872 1.6134 17 7 4.7563 4.6062 2.4311 18 6 5.4827 5.7590 2.5674 19 1 6.5568 5.7365 2.4580 20 6 4.8383 6.9566 2.8460 21 7 3.5598 6.9587 3.1589 22 14 5.7856 8.5650 2.7770 23 1 7.1972 8.2926 2.4049 24 1 5.1698 9.4591 1.7638 25 1 5.7431 9.2221 4.1081 26 6 2.2547 1.7549 -1.4419 27 6 3.2287 0.9285 -2.2841 28 6 1.7259 0.8556 -2.5621 29 1 -0.3633 0.4243 0.9360 30 1 -0.3633 0.5985 -0.8354 31 1 -0.3633 -1.0227 -0.1006 32 1 3.9950 4.1794 -0.1662 33 1 2.3781 3.5658 0.2693 34 1 2.4273 4.6362 3.7935 35 1 1.4409 3.9373 2.4860 36 1 2.9554 1.9845 2.4169 37 1 2.2660 2.1813 4.0452 38 1 4.6917 1.7046 4.1685 39 1 4.3381 3.3400 4.7769 40 1 5.5540 1.3677 1.9170 41 1 6.0655 2.7460 0.9077 42 1 3.1095 7.7955 3.3533 43 1 2.2339 2.8319 -1.6085 44 1 3.8486 1.4617 -3.0048 45 1 3.6951 0.0643 -1.8109 46 1 1.3572 1.3411 -3.4658 47 1 1.2039 -0.0560 -2.2715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039564708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:47 Heat of formation + Delta-G solvation = -12.830706 kcal Electronic energy + Delta-G solvation = -28500.895970 eV Core-core repulsion = 24878.908620 eV Total energy + Delta-G solvation = -3621.987350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.25955 -40.09018 -38.58704 -36.82733 -35.54536 -34.53496 -33.57155 -32.14133 -30.29048 -28.29179 -27.33240 -26.62765 -25.41472 -23.43421 -23.14101 -22.81794 -22.18993 -20.61903 -19.97412 -18.75467 -17.98612 -17.71265 -17.31012 -16.81677 -16.35447 -16.10073 -15.72016 -15.52405 -15.36739 -15.14038 -14.69835 -14.55829 -14.34361 -14.13221 -13.71383 -13.64092 -13.46168 -13.08460 -13.01043 -12.83711 -12.62458 -12.42663 -12.32296 -12.22109 -12.05136 -11.97051 -11.74041 -11.60871 -11.59488 -11.32108 -11.18563 -11.07505 -10.76170 -10.49829 -10.31326 -9.44015 -8.37836 -7.79133 -5.32483 1.48634 1.53108 1.57241 1.60793 1.81889 2.53502 2.74421 2.95887 3.34825 3.49907 3.58733 3.66593 3.87949 4.10346 4.13800 4.18081 4.21249 4.28382 4.29142 4.36280 4.38920 4.48791 4.57462 4.58918 4.68183 4.75828 4.80047 4.83131 4.86223 4.87012 4.91458 4.99216 5.00914 5.11745 5.17750 5.26085 5.31475 5.35727 5.43639 5.53922 5.70841 5.77379 5.87612 6.08396 6.47554 6.50925 7.17981 7.21579 7.84614 8.46671 9.23385 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.004823 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.898623 B = 5804.139309 C = 6074.800117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.382 6.382 3 C 0.104 3.896 4 H 0.101 0.899 5 C 0.521 3.479 6 O -0.574 6.574 7 N -0.583 5.583 8 C 0.097 3.903 9 C 0.175 3.825 10 H 0.090 0.910 11 C -0.105 4.105 12 C -0.133 4.133 13 C -0.116 4.116 14 C 0.148 3.852 15 H 0.074 0.926 16 C 0.112 3.888 17 N -0.592 5.592 18 C -0.257 4.257 19 H 0.061 0.939 20 C -0.035 4.035 21 N -0.920 5.920 22 Si 0.961 3.039 23 H -0.272 1.272 24 H -0.289 1.289 25 H -0.299 1.299 26 C -0.189 4.189 27 C -0.177 4.177 28 C -0.144 4.144 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.035 0.965 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.249 0.751 43 H 0.134 0.866 44 H 0.106 0.894 45 H 0.070 0.930 46 H 0.119 0.881 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.767 -8.975 -10.183 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.300 6.300 3 C 0.043 3.957 4 H 0.119 0.881 5 C 0.311 3.689 6 O -0.454 6.454 7 N -0.316 5.316 8 C -0.026 4.026 9 C 0.068 3.932 10 H 0.108 0.892 11 C -0.144 4.144 12 C -0.171 4.171 13 C -0.155 4.155 14 C 0.041 3.959 15 H 0.092 0.908 16 C -0.012 4.012 17 N -0.313 5.313 18 C -0.387 4.387 19 H 0.079 0.921 20 C -0.231 4.231 21 N -0.565 5.565 22 Si 0.790 3.210 23 H -0.197 1.197 24 H -0.216 1.216 25 H -0.226 1.226 26 C -0.207 4.207 27 C -0.214 4.214 28 C -0.181 4.181 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.152 0.848 44 H 0.124 0.876 45 H 0.089 0.911 46 H 0.137 0.863 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.483 -9.540 -9.950 15.233 hybrid contribution 0.397 1.379 0.774 1.631 sum -6.086 -8.161 -9.176 13.705 Atomic orbital electron populations 1.23139 0.78838 1.04372 1.01322 1.87977 1.21743 1.25482 1.94835 1.21403 0.92533 0.86795 0.94956 0.88095 1.20498 0.86693 0.83052 0.78660 1.90649 1.69891 1.31264 1.53611 1.48003 1.18570 1.06119 1.58915 1.22611 0.98619 0.82827 0.98576 1.21086 0.84640 0.97602 0.89824 0.89218 1.21687 0.97689 0.95117 0.99934 1.21986 0.95771 0.98247 1.01088 1.21816 0.96765 0.98720 0.98209 1.21249 0.96420 0.86153 0.92112 0.90763 1.21913 0.83559 1.00322 0.95389 1.44481 1.14561 1.01598 1.70700 1.19379 0.91255 0.86366 1.41725 0.92121 1.25757 0.97118 1.01050 0.99217 1.70046 1.10133 1.25627 1.50711 0.85314 0.78619 0.80597 0.76456 1.19707 1.21604 1.22624 1.22833 1.08320 0.99373 0.90181 1.22848 0.93800 1.01831 1.02934 1.23038 0.95639 1.01174 0.98212 0.93633 0.91567 0.87916 0.91320 0.88335 0.94612 0.92539 0.90079 0.94533 0.92683 0.94747 0.90138 0.91449 0.94157 0.84833 0.87584 0.91110 0.86323 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.95 113.37 1.13 1.47 16 2 O -0.38 -10.49 8.65 -130.01 -1.13 -11.61 16 3 C 0.10 2.78 2.10 29.85 0.06 2.85 16 4 H 0.10 2.42 6.80 -2.39 -0.02 2.40 16 5 C 0.52 17.78 3.99 87.66 0.35 18.13 16 6 O -0.57 -23.84 15.87 15.96 0.25 -23.58 16 7 N -0.58 -19.74 1.66 -818.16 -1.36 -21.10 16 8 C 0.10 3.18 5.01 86.50 0.43 3.61 16 9 C 0.18 7.30 2.62 45.11 0.12 7.42 16 10 H 0.09 4.30 6.00 -2.39 -0.01 4.28 16 11 C -0.11 -4.26 5.50 30.69 0.17 -4.09 16 12 C -0.13 -5.12 5.56 30.57 0.17 -4.95 16 13 C -0.12 -4.65 5.61 30.72 0.17 -4.48 16 14 C 0.15 6.00 3.58 44.95 0.16 6.16 16 15 H 0.07 3.00 8.01 -2.39 -0.02 2.98 16 16 C 0.11 4.05 5.86 86.33 0.51 4.56 16 17 N -0.59 -27.08 2.51 -646.54 -1.62 -28.70 16 18 C -0.26 -13.11 9.71 84.03 0.82 -12.30 16 19 H 0.06 3.09 7.85 -2.91 -0.02 3.07 16 20 C -0.03 -1.80 5.14 84.86 0.44 -1.36 16 21 N -0.92 -49.51 10.63 21.65 0.23 -49.28 16 22 Si 0.96 42.53 29.56 68.60 2.03 44.56 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 26 C -0.19 -4.08 4.97 -10.77 -0.05 -4.13 16 27 C -0.18 -4.02 9.78 30.60 0.30 -3.72 16 28 C -0.14 -2.58 9.27 30.62 0.28 -2.29 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.93 7.40 -2.39 -0.02 0.91 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.10 2.60 4.81 -2.39 -0.01 2.59 16 34 H 0.03 1.72 7.79 -2.39 -0.02 1.70 16 35 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.08 3.03 2.63 -2.40 -0.01 3.02 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 2.94 6.98 -2.39 -0.02 2.92 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 43 H 0.13 2.50 7.05 -2.39 -0.02 2.49 16 44 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.07 2.01 8.10 -2.38 -0.02 1.99 16 46 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 47 H 0.10 1.87 6.25 -2.39 -0.01 1.86 16 Total: -1.00 -63.23 348.26 4.42 -58.81 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.96 Total: 24.01 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.05 Total: 6.89 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -2.75 Total: -99.08 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.87 Total: -35.19 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -63.23 4.42 -58.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039564708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.981 kcal (2) G-P(sol) polarization free energy of solvation -63.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds