Wall clock time and date at job start Tue Mar 31 2020 09:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 120.00243 * 2 1 4 4 O 1.21275 * 120.00152 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99897 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.47289 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.63994 * 305.00241 * 6 5 3 8 8 C 1.53022 * 109.64093 * 65.42008 * 6 5 3 9 9 C 1.50162 * 110.09456 * 168.90544 * 8 6 5 10 10 C 1.29449 * 124.14767 * 343.28409 * 9 8 6 11 11 C 1.50063 * 124.07297 * 0.24054 * 10 9 8 12 12 C 1.53021 * 110.15083 * 342.86664 * 11 10 9 13 13 C 1.46500 * 119.99783 * 179.97438 * 2 1 3 14 14 H 1.08999 * 110.91648 * 177.55285 * 13 2 1 15 15 C 1.54910 * 111.00500 * 301.45601 * 13 2 1 16 16 N 1.47426 * 104.83209 * 155.08471 * 15 13 2 17 17 C 1.36932 * 125.64638 * 155.89300 * 16 15 13 18 18 H 1.08002 * 120.00173 * 0.02562 * 17 16 15 19 19 C 1.38818 * 119.99942 * 180.02562 * 17 16 15 20 20 N 1.31615 * 119.99835 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99957 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47201 * 89.99832 * 21 19 17 23 23 H 1.48504 * 109.46988 * 209.99240 * 21 19 17 24 24 H 1.48494 * 109.47504 * 329.99666 * 21 19 17 25 25 C 1.47019 * 108.70209 * 335.87354 * 16 15 13 26 26 C 1.54322 * 107.27223 * 1.05519 * 25 16 15 27 27 H 1.09002 * 110.72203 * 263.83177 * 26 25 16 28 28 O 1.42900 * 110.71905 * 140.73324 * 26 25 16 29 29 H 1.08995 * 109.47189 * 270.00562 * 1 2 3 30 30 H 1.09004 * 109.46336 * 30.00489 * 1 2 3 31 31 H 1.08998 * 109.46965 * 150.00529 * 1 2 3 32 32 H 1.09004 * 109.47091 * 300.00636 * 5 3 2 33 33 H 1.08997 * 109.47077 * 60.00487 * 5 3 2 34 34 H 1.09006 * 109.35919 * 289.32938 * 8 6 5 35 35 H 1.08998 * 109.35952 * 48.91319 * 8 6 5 36 36 H 1.07998 * 117.89253 * 163.03536 * 9 8 6 37 37 H 1.08003 * 117.96005 * 180.21835 * 10 9 8 38 38 H 1.09000 * 109.35642 * 222.65649 * 11 10 9 39 39 H 1.09001 * 109.24453 * 103.00458 * 11 10 9 40 40 H 1.09003 * 109.64496 * 289.75670 * 12 11 10 41 41 H 1.08996 * 109.64277 * 169.11918 * 12 11 10 42 42 H 1.08998 * 110.36709 * 36.24572 * 15 13 2 43 43 H 1.09005 * 110.36466 * 273.92106 * 15 13 2 44 44 H 0.97001 * 119.99871 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.88389 * 120.48020 * 25 16 15 46 46 H 1.09004 * 109.87600 * 241.48978 * 25 16 15 47 47 H 0.96711 * 113.99811 * 61.45858 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3797 3.6352 -0.0011 7 1 3.0654 3.5314 0.8398 8 6 3.1696 3.6360 -1.3117 9 6 3.9482 4.9132 -1.4440 10 6 3.7167 5.9807 -0.7493 11 6 2.6401 6.0901 0.2903 12 6 1.6203 4.9630 0.1137 13 6 2.1975 -1.2688 0.0006 14 1 3.2730 -1.0972 -0.0430 15 6 1.8216 -2.1264 1.2346 16 7 2.0991 -3.5158 0.8272 17 6 2.3686 -4.5572 1.6746 18 1 2.3898 -4.3933 2.7419 19 6 2.6145 -5.8235 1.1618 20 7 2.5881 -6.0233 -0.1389 21 14 2.9814 -7.2442 2.3177 22 1 1.7118 -7.9152 2.6959 23 1 3.8725 -8.2183 1.6376 24 1 3.6516 -6.7288 3.5385 25 6 2.0381 -3.5982 -0.6394 26 6 1.7321 -2.1801 -1.1656 27 1 0.6643 -2.0584 -1.3477 28 8 2.4797 -1.9093 -2.3530 29 1 -0.3633 0.0001 1.0276 30 1 -0.3632 0.8900 -0.5140 31 1 -0.3633 -0.8900 -0.5137 32 1 0.7591 2.5298 -0.8908 33 1 0.7586 2.5303 0.8892 34 1 3.8548 2.7883 -1.3212 35 1 2.4786 3.5488 -2.1501 36 1 4.7549 4.9411 -2.1616 37 1 4.3372 6.8462 -0.9289 38 1 2.1369 7.0517 0.1894 39 1 3.0888 6.0194 1.2811 40 1 1.0399 5.1327 -0.7932 41 1 0.9558 4.9315 0.9771 42 1 0.7650 -2.0049 1.4733 43 1 2.4388 -1.8514 2.0899 44 1 2.7596 -6.9082 -0.4972 45 1 2.9957 -3.9406 -1.0316 46 1 1.2475 -4.2860 -0.9394 47 1 2.2786 -2.5039 -3.0886 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047487828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:21 Heat of formation + Delta-G solvation = -46.982978 kcal Electronic energy + Delta-G solvation = -26330.087701 eV Core-core repulsion = 22706.619397 eV Total energy + Delta-G solvation = -3623.468304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18697 -38.67022 -37.56690 -35.17291 -34.75170 -32.92231 -31.83165 -30.84288 -28.87764 -27.62634 -27.18124 -26.23343 -24.33225 -23.31400 -21.69952 -20.46286 -20.16316 -18.75177 -18.07455 -17.23464 -17.06363 -16.37024 -16.05401 -15.75410 -15.37882 -14.76345 -14.40911 -14.13630 -13.94943 -13.67435 -13.38450 -13.09005 -12.77381 -12.75229 -12.61202 -12.49090 -12.35389 -12.27039 -12.05265 -11.86223 -11.72558 -11.34026 -11.22673 -10.88604 -10.80371 -10.78046 -10.61588 -10.24233 -10.16038 -9.93784 -9.82192 -9.50452 -9.24433 -9.01989 -8.72220 -8.31310 -6.93248 -5.77950 -3.12970 2.23279 2.84826 3.15937 3.37606 3.42923 3.44991 4.42996 4.50080 4.52863 4.62784 4.69870 4.89913 5.02785 5.11486 5.17305 5.25088 5.26647 5.35087 5.39003 5.46455 5.47742 5.55595 5.59179 5.62652 5.68812 5.70081 5.72842 5.78285 5.84742 5.93094 6.05302 6.08280 6.12579 6.24315 6.34183 6.49960 6.58606 6.63044 6.89519 6.92177 7.33154 7.45679 7.63581 7.72039 8.15471 8.18443 8.42532 9.12880 9.73101 10.36305 11.33570 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.028671 B = 0.002881 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.347157 B = 9716.696471 C = 9855.188514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.603 5.603 3 C 0.513 3.487 4 O -0.536 6.536 5 C -0.134 4.134 6 C -0.071 4.071 7 H 0.080 0.920 8 C -0.094 4.094 9 C -0.142 4.142 10 C -0.171 4.171 11 C -0.088 4.088 12 C -0.115 4.115 13 C 0.134 3.866 14 H 0.114 0.886 15 C 0.132 3.868 16 N -0.599 5.599 17 C -0.230 4.230 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.152 3.848 26 C 0.064 3.936 27 H 0.056 0.944 28 O -0.562 6.562 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.025 0.975 43 H 0.047 0.953 44 H 0.253 0.747 45 H 0.060 0.940 46 H 0.048 0.952 47 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.251 20.660 -2.732 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.336 5.336 3 C 0.301 3.699 4 O -0.412 6.412 5 C -0.174 4.174 6 C -0.090 4.090 7 H 0.099 0.901 8 C -0.131 4.131 9 C -0.160 4.160 10 C -0.189 4.189 11 C -0.125 4.125 12 C -0.153 4.153 13 C 0.030 3.970 14 H 0.132 0.868 15 C 0.005 3.995 16 N -0.327 5.327 17 C -0.358 4.358 18 H 0.098 0.902 19 C -0.203 4.203 20 N -0.570 5.570 21 Si 0.746 3.254 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.027 3.973 26 C 0.004 3.996 27 H 0.074 0.926 28 O -0.366 6.366 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.296 20.902 -2.376 21.693 hybrid contribution -0.177 -1.343 0.112 1.360 sum -5.473 19.559 -2.263 20.436 Atomic orbital electron populations 1.21804 0.80082 1.03078 1.01936 1.47777 1.06707 1.06033 1.73038 1.20623 0.88148 0.85174 0.75935 1.90663 1.13989 1.87125 1.49465 1.21791 0.99192 0.92359 1.04034 1.20964 0.96268 0.92363 0.99412 0.90116 1.20671 0.99089 0.96731 0.96562 1.22149 0.99506 0.94895 0.99433 1.21979 0.99798 0.98147 0.98966 1.20404 0.95316 0.98611 0.98161 1.21673 0.97505 0.94247 1.01864 1.22361 0.98452 0.81319 0.94890 0.86800 1.21772 0.97778 0.85578 0.94391 1.44238 1.83368 1.03132 1.01976 1.19076 1.41270 0.86499 0.88953 0.90151 1.24825 1.01709 0.97625 0.96176 1.69929 1.55567 1.21598 1.09932 0.86065 0.77761 0.82035 0.79577 1.21540 1.21591 1.20581 1.21850 1.01693 0.89564 0.84229 1.23570 0.93470 0.97585 0.85011 0.92612 1.86488 1.67416 1.59648 1.23073 0.92374 0.91269 0.90652 0.89076 0.88967 0.88761 0.91498 0.88260 0.88397 0.91356 0.91064 0.91755 0.91625 0.95771 0.93448 0.93625 0.92226 0.93421 0.77946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 9.13 59.85 0.55 1.38 16 2 N -0.60 -9.26 2.91 -171.48 -0.50 -9.76 16 3 C 0.51 7.83 7.43 -10.98 -0.08 7.75 16 4 O -0.54 -10.26 13.43 5.56 0.07 -10.18 16 5 C -0.13 -1.40 3.73 -27.88 -0.10 -1.50 16 6 C -0.07 -0.77 1.87 -90.40 -0.17 -0.94 16 7 H 0.08 1.03 7.94 -51.93 -0.41 0.61 16 8 C -0.09 -1.12 5.06 -28.13 -0.14 -1.26 16 9 C -0.14 -1.54 9.80 -35.86 -0.35 -1.89 16 10 C -0.17 -1.64 9.80 -35.90 -0.35 -2.00 16 11 C -0.09 -0.74 6.12 -28.18 -0.17 -0.91 16 12 C -0.12 -0.96 5.31 -26.52 -0.14 -1.10 16 13 C 0.13 2.59 3.18 -65.78 -0.21 2.38 16 14 H 0.11 2.58 7.02 -51.93 -0.36 2.21 16 15 C 0.13 2.77 6.83 -2.53 -0.02 2.76 16 16 N -0.60 -15.28 3.39 -170.07 -0.58 -15.86 16 17 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -26.77 10.31 55.49 0.57 -26.19 16 21 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.15 3.65 5.15 -3.07 -0.02 3.63 16 26 C 0.06 1.23 3.87 -24.90 -0.10 1.13 16 27 H 0.06 0.96 6.02 -51.93 -0.31 0.65 16 28 O -0.56 -10.44 13.40 -35.23 -0.47 -10.92 16 29 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.07 0.57 6.44 -51.93 -0.33 0.24 16 31 H 0.07 0.88 6.01 -51.93 -0.31 0.57 16 32 H 0.09 0.80 7.36 -51.93 -0.38 0.42 16 33 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 34 H 0.09 1.40 6.25 -51.93 -0.32 1.08 16 35 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 36 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.10 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.48 7.22 -51.93 -0.37 0.10 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.06 1.62 7.30 -51.93 -0.38 1.24 16 46 H 0.05 1.22 7.50 -51.93 -0.39 0.84 16 47 H 0.37 5.40 9.11 45.56 0.42 5.82 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -33.11 362.75 -8.95 -42.06 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.94 Total: 5.81 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.56 Total: 2.60 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.50 Total: -51.81 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.40 Total: -21.10 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.11 -8.95 -42.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047487828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.921 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds