Wall clock time and date at job start Tue Mar 31 2020 09:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47066 * 2 1 4 4 N 1.46499 * 109.47039 * 180.02562 * 3 2 1 5 5 N 1.28446 * 125.19004 * 259.78351 * 4 3 2 6 6 C 1.30869 * 110.92670 * 179.97438 * 5 4 3 7 7 C 1.39673 * 107.85899 * 359.77576 * 6 5 4 8 8 C 1.36603 * 125.18947 * 79.75508 * 4 3 2 9 9 C 1.47161 * 126.88445 * 359.97438 * 8 4 3 10 10 O 1.21626 * 119.99907 * 173.98895 * 9 8 4 11 11 N 1.34779 * 119.99863 * 353.98916 * 9 8 4 12 12 C 1.46495 * 119.99698 * 184.25330 * 11 9 8 13 13 H 1.09000 * 109.47227 * 327.98317 * 12 11 9 14 14 C 1.53002 * 109.47696 * 87.98580 * 12 11 9 15 15 C 1.53001 * 109.46853 * 207.98508 * 12 11 9 16 16 C 1.53003 * 109.47417 * 174.46226 * 15 12 11 17 17 H 1.09005 * 109.46676 * 56.06242 * 16 15 12 18 18 C 1.52998 * 109.47254 * 176.06521 * 16 15 12 19 19 N 1.46498 * 109.46754 * 296.06971 * 16 15 12 20 20 C 1.36937 * 120.00187 * 151.89912 * 19 16 15 21 21 H 1.08001 * 119.99919 * 5.39094 * 20 19 16 22 22 C 1.38804 * 120.00465 * 185.39632 * 20 19 16 23 23 N 1.31622 * 119.99649 * 5.29088 * 22 20 19 24 24 Si 1.86799 * 120.00472 * 185.56556 * 22 20 19 25 25 H 1.48501 * 109.47400 * 179.72079 * 24 22 20 26 26 H 1.48498 * 109.47258 * 299.72901 * 24 22 20 27 27 H 1.48500 * 109.46757 * 59.72342 * 24 22 20 28 28 H 1.09004 * 109.46861 * 299.99659 * 1 2 3 29 29 H 1.09000 * 109.47384 * 59.99704 * 1 2 3 30 30 H 1.09001 * 109.47060 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46971 * 239.99947 * 2 1 3 32 32 H 1.09000 * 109.47384 * 120.00296 * 2 1 3 33 33 H 1.09004 * 109.47002 * 60.00428 * 3 2 1 34 34 H 1.09000 * 109.47261 * 300.00372 * 3 2 1 35 35 H 1.07999 * 126.06763 * 180.02562 * 6 5 4 36 36 H 1.08000 * 127.31740 * 180.23229 * 7 6 5 37 37 H 0.96995 * 119.99758 * 4.24438 * 11 9 8 38 38 H 1.08997 * 109.46962 * 179.97438 * 14 12 11 39 39 H 1.08997 * 109.46586 * 299.99845 * 14 12 11 40 40 H 1.09000 * 109.46997 * 59.99597 * 14 12 11 41 41 H 1.08996 * 109.47487 * 54.46162 * 15 12 11 42 42 H 1.09005 * 109.47402 * 294.46076 * 15 12 11 43 43 H 1.08998 * 109.47190 * 60.00304 * 18 16 15 44 44 H 1.08998 * 109.46911 * 180.02562 * 18 16 15 45 45 H 1.08997 * 109.46948 * 299.99633 * 18 16 15 46 46 H 0.96999 * 120.00296 * 331.88689 * 19 16 15 47 47 H 0.96994 * 120.00211 * 355.27683 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.2457 1.6285 1.0322 6 6 5.5139 1.5709 0.7144 7 6 5.6009 1.3183 -0.6565 8 6 4.2918 1.2441 -1.0996 9 6 3.8382 0.9948 -2.4772 10 8 4.6473 0.9433 -3.3838 11 7 2.5263 0.8235 -2.7341 12 6 2.0836 0.4831 -4.0884 13 1 2.7550 0.9395 -4.8157 14 6 2.0993 -1.0368 -4.2634 15 6 0.6627 1.0069 -4.3072 16 6 0.2518 0.7743 -5.7625 17 1 0.3507 -0.2843 -6.0032 18 6 -1.2025 1.2080 -5.9574 19 7 1.1180 1.5589 -6.6458 20 6 1.3623 1.1297 -7.9231 21 1 0.8490 0.2612 -8.3084 22 6 2.2698 1.8109 -8.7225 23 7 2.9722 2.8046 -8.2210 24 14 2.4888 1.3222 -10.5121 25 1 3.5042 2.2019 -11.1448 26 1 2.9412 -0.0902 -10.5878 27 1 1.1949 1.4664 -11.2264 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 6.3455 1.6925 1.3926 36 1 6.4989 1.2068 -1.2460 37 1 1.8754 0.9255 -2.0223 38 1 1.7694 -1.2899 -5.2709 39 1 3.1115 -1.4099 -4.1075 40 1 1.4278 -1.4932 -3.5361 41 1 0.6308 2.0739 -4.0868 42 1 -0.0250 0.4788 -3.6467 43 1 -1.3013 2.2664 -5.7168 44 1 -1.4953 1.0418 -6.9941 45 1 -1.8468 0.6241 -5.3002 46 1 1.5184 2.3825 -6.3261 47 1 2.8073 3.1058 -7.3139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134494271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:50 Heat of formation + Delta-G solvation = 26.665139 kcal Electronic energy + Delta-G solvation = -26594.614926 eV Core-core repulsion = 23006.632996 eV Total energy + Delta-G solvation = -3587.981931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.70334 -40.87311 -38.62103 -37.22461 -35.99859 -34.31710 -32.73513 -32.50571 -31.14460 -30.10321 -27.78192 -27.62270 -25.64678 -24.94338 -23.15589 -22.63833 -22.48090 -21.68609 -20.91560 -19.49584 -19.14172 -17.42474 -17.22716 -16.86433 -16.54472 -16.45363 -16.29088 -15.93510 -15.53614 -15.30199 -14.88964 -14.72028 -14.45582 -14.22109 -14.19263 -13.73428 -13.51091 -13.26032 -13.11504 -13.04339 -12.94244 -12.59584 -12.42699 -12.41906 -12.33751 -12.06504 -11.91350 -11.89590 -11.86185 -11.63819 -11.34606 -11.16305 -10.84065 -10.46950 -10.21031 -10.08597 -9.05540 -8.32751 -5.26201 0.07149 1.31001 1.54261 1.56985 1.67302 1.82998 1.87135 2.02781 2.73828 3.20653 3.43973 3.45317 3.61107 3.69015 3.83871 3.89640 3.99012 4.00555 4.15263 4.20692 4.32994 4.38275 4.41014 4.49792 4.51207 4.62493 4.68731 4.75188 4.83831 4.88256 4.88656 5.00308 5.03966 5.05229 5.08011 5.14295 5.33042 5.35375 5.39231 5.42758 5.54197 5.63347 5.67001 6.25310 6.53675 6.86511 6.98103 7.15875 8.05835 8.18165 9.18413 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.016655 B = 0.003801 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.821047 B = 7363.850209 C = 8535.625800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.093 3.907 4 N -0.270 5.270 5 N -0.281 5.281 6 C 0.000 4.000 7 C -0.170 4.170 8 C -0.062 4.062 9 C 0.582 3.418 10 O -0.566 6.566 11 N -0.710 5.710 12 C 0.144 3.856 13 H 0.050 0.950 14 C -0.150 4.150 15 C -0.118 4.118 16 C 0.169 3.831 17 H 0.053 0.947 18 C -0.155 4.155 19 N -0.746 5.746 20 C -0.320 4.320 21 H 0.067 0.933 22 C -0.108 4.108 23 N -0.978 5.978 24 Si 1.122 2.878 25 H -0.298 1.298 26 H -0.280 1.280 27 H -0.276 1.276 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.102 0.898 35 H 0.223 0.777 36 H 0.164 0.836 37 H 0.410 0.590 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.111 0.889 43 H 0.042 0.958 44 H 0.032 0.968 45 H 0.080 0.920 46 H 0.354 0.646 47 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 -6.510 22.979 24.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C -0.026 4.026 4 N -0.061 5.061 5 N -0.113 5.113 6 C -0.175 4.175 7 C -0.199 4.199 8 C -0.189 4.189 9 C 0.368 3.632 10 O -0.443 6.443 11 N -0.368 5.368 12 C 0.039 3.961 13 H 0.069 0.931 14 C -0.208 4.208 15 C -0.157 4.157 16 C 0.061 3.939 17 H 0.071 0.929 18 C -0.214 4.214 19 N -0.388 5.388 20 C -0.452 4.452 21 H 0.085 0.915 22 C -0.299 4.299 23 N -0.627 5.627 24 Si 0.948 3.052 25 H -0.224 1.224 26 H -0.206 1.206 27 H -0.202 1.202 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.156 0.844 34 H 0.120 0.880 35 H 0.239 0.761 36 H 0.182 0.818 37 H 0.254 0.746 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.099 0.901 46 H 0.186 0.814 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.556 -6.333 21.742 23.575 hybrid contribution 0.078 0.191 0.652 0.684 sum -6.478 -6.142 22.393 24.107 Atomic orbital electron populations 1.21760 0.91326 1.03951 1.03754 1.22101 0.99233 0.93611 1.03697 1.22690 0.71956 1.00922 1.07019 1.46146 1.08056 1.48862 1.03021 1.73135 1.04844 1.19435 1.13935 1.24147 0.94042 1.04524 0.94799 1.22484 0.95752 1.05170 0.96515 1.21669 0.93312 1.15070 0.88821 1.17379 0.83194 0.76405 0.86268 1.90880 1.54852 1.52428 1.46161 1.46535 1.06673 1.70650 1.12940 1.20877 0.96752 0.96190 0.82242 0.93130 1.22076 1.01455 0.94345 1.02940 1.22079 0.94230 1.01622 0.97760 1.20484 0.90017 0.95028 0.88374 0.92884 1.22276 0.97402 1.00919 1.00835 1.42654 1.57936 1.26264 1.11908 1.20330 1.21834 1.11584 0.91427 0.91521 1.27062 0.95788 0.98189 1.08883 1.70979 1.42558 1.32103 1.17055 0.82693 0.76188 0.75334 0.70968 1.22443 1.20586 1.20233 0.90468 0.91241 0.90755 0.91899 0.90241 0.84449 0.88024 0.76071 0.81841 0.74636 0.91832 0.94538 0.89392 0.91853 0.87028 0.93893 0.94883 0.90074 0.81446 0.94879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 71.98 0.71 -0.32 16 2 C -0.15 -1.74 5.51 30.60 0.17 -1.57 16 3 C 0.09 1.32 5.48 86.38 0.47 1.79 16 4 N -0.27 -5.97 3.36 -334.68 -1.12 -7.09 16 5 N -0.28 -6.25 11.90 -57.14 -0.68 -6.93 16 6 C 0.00 0.01 12.03 85.18 1.02 1.03 16 7 C -0.17 -4.41 10.85 22.66 0.25 -4.16 16 8 C -0.06 -1.74 6.93 40.79 0.28 -1.46 16 9 C 0.58 19.91 7.78 86.59 0.67 20.58 16 10 O -0.57 -25.49 16.51 -4.11 -0.07 -25.56 16 11 N -0.71 -19.68 4.23 -446.06 -1.88 -21.56 16 12 C 0.14 4.72 2.67 44.99 0.12 4.84 16 13 H 0.05 2.33 6.85 -2.39 -0.02 2.32 16 14 C -0.15 -4.50 9.28 71.98 0.67 -3.84 16 15 C -0.12 -3.28 4.45 30.60 0.14 -3.15 16 16 C 0.17 6.10 2.76 44.99 0.12 6.22 16 17 H 0.05 1.96 6.32 -2.38 -0.02 1.95 16 18 C -0.15 -4.83 9.52 71.98 0.68 -4.14 16 19 N -0.75 -36.72 4.38 -322.94 -1.41 -38.13 16 20 C -0.32 -17.96 9.93 84.03 0.83 -17.13 16 21 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 22 C -0.11 -6.45 5.50 84.86 0.47 -5.98 16 23 N -0.98 -63.86 13.69 21.65 0.30 -63.56 16 24 Si 1.12 53.73 29.92 68.60 2.05 55.78 16 25 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 28 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.96 6.56 -2.39 -0.02 0.95 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 1.36 6.18 -2.39 -0.01 1.34 16 35 H 0.22 2.69 8.06 -2.91 -0.02 2.66 16 36 H 0.16 4.12 8.06 -2.91 -0.02 4.09 16 37 H 0.41 8.15 3.00 -92.71 -0.28 7.87 16 38 H 0.06 2.09 6.50 -2.39 -0.02 2.08 16 39 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 43 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.35 18.87 6.73 -92.71 -0.62 18.25 16 47 H 0.24 15.83 6.82 -92.71 -0.63 15.19 16 Total: -1.00 -80.74 378.53 4.00 -76.74 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.21 Total: 37.60 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 6.62 Total: -7.28 kcal Atomic # 7 Polarization: -132.47 SS G_CDS: -4.81 Total: -137.27 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.07 Total: -25.56 kcal Atomic # 14 Polarization: 53.73 SS G_CDS: 2.05 Total: 55.78 kcal Total: -80.74 4.00 -76.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134494271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.403 kcal (2) G-P(sol) polarization free energy of solvation -80.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds