Wall clock time and date at job start Tue Mar 31 2020 10:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00375 * 2 1 4 4 C 1.52998 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.79172 * 309.34099 * 4 3 2 6 6 C 1.53579 * 109.85442 * 188.51143 * 4 3 2 7 7 N 1.46940 * 109.69290 * 191.43508 * 6 4 3 8 8 C 1.46903 * 110.99923 * 195.69855 * 7 6 4 9 9 H 1.09001 * 109.47286 * 55.05593 * 8 7 6 10 10 C 1.52994 * 109.47289 * 295.05539 * 8 7 6 11 11 C 1.53003 * 109.47000 * 175.05246 * 8 7 6 12 12 C 1.52998 * 109.47580 * 295.28526 * 11 8 7 13 13 C 1.50697 * 109.47541 * 175.34249 * 12 11 8 14 14 H 1.07996 * 119.99753 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99980 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00078 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99633 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47091 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47524 * 59.99760 * 17 15 13 20 20 H 1.48505 * 109.47340 * 299.99448 * 17 15 13 21 21 C 1.47347 * 111.56121 * 71.34102 * 7 6 4 22 22 C 1.50576 * 108.22281 * 308.78692 * 21 7 6 23 23 N 1.32697 * 129.92366 * 196.34926 * 22 21 7 24 24 N 1.29096 * 108.62932 * 179.84079 * 23 22 21 25 25 N 1.29196 * 110.27528 * 0.02735 * 24 23 22 26 26 C 1.46504 * 126.02662 * 180.08431 * 25 24 23 27 27 C 1.34112 * 107.94531 * 0.08375 * 25 24 23 28 28 H 1.09001 * 109.47190 * 60.00063 * 1 2 3 29 29 H 1.09002 * 109.47291 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46780 * 300.00069 * 1 2 3 31 31 H 1.08995 * 109.47229 * 60.00015 * 3 2 1 32 32 H 1.08999 * 109.47219 * 299.99892 * 3 2 1 33 33 H 1.08995 * 109.43950 * 71.36162 * 6 4 3 34 34 H 1.09002 * 109.42944 * 311.49647 * 6 4 3 35 35 H 1.09006 * 109.46885 * 295.18504 * 10 8 7 36 36 H 1.08997 * 109.47366 * 55.18710 * 10 8 7 37 37 H 1.08995 * 109.47496 * 175.19151 * 10 8 7 38 38 H 1.09003 * 109.46832 * 175.28153 * 11 8 7 39 39 H 1.09006 * 109.47105 * 55.28410 * 11 8 7 40 40 H 1.09001 * 109.47202 * 55.33589 * 12 11 8 41 41 H 1.09007 * 109.46754 * 295.34463 * 12 11 8 42 42 H 0.97001 * 120.00127 * 0.02562 * 16 15 13 43 43 H 1.09000 * 109.71428 * 68.47116 * 21 7 6 44 44 H 1.08996 * 109.71007 * 189.10985 * 21 7 6 45 45 H 1.08998 * 109.47031 * 261.78855 * 26 25 24 46 46 H 1.09000 * 109.47320 * 21.78943 * 26 25 24 47 47 H 1.09003 * 109.46991 * 141.79323 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8517 0.5074 0.7941 6 6 4.1682 2.5675 0.2144 7 7 5.6110 2.4990 -0.0554 8 6 6.3043 3.6755 0.4859 9 1 6.0805 3.7722 1.5484 10 6 5.8313 4.9301 -0.2510 11 6 7.8134 3.5106 0.2956 12 6 8.3059 2.3247 1.1274 13 6 9.7690 2.0910 0.8521 14 1 10.2949 2.7247 0.1533 15 6 10.4359 1.0676 1.4914 16 7 9.7954 0.2956 2.3419 17 14 12.2493 0.7775 1.1496 18 1 12.7273 -0.3735 1.9570 19 1 13.0222 1.9920 1.5138 20 1 12.4402 0.4836 -0.2935 21 6 5.8858 2.3399 -1.4943 22 6 5.0629 1.1875 -2.0063 23 7 5.1792 0.4908 -3.1296 24 7 4.2560 -0.4113 -3.1529 25 7 3.5312 -0.3377 -2.0859 26 6 2.3910 -1.1972 -1.7578 27 6 4.0065 0.6643 -1.3318 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 4.0066 2.8850 1.2445 34 1 3.7064 3.2861 -0.4626 35 1 6.1309 4.8715 -1.2974 36 1 4.7455 5.0013 -0.1874 37 1 6.2806 5.8114 0.2066 38 1 8.3219 4.4184 0.6204 39 1 8.0292 3.3303 -0.7576 40 1 7.7389 1.4330 0.8601 41 1 8.1654 2.5406 2.1866 42 1 8.8536 0.4460 2.5191 43 1 5.6109 3.2520 -2.0241 44 1 6.9448 2.1312 -1.6454 45 1 1.4642 -0.6872 -2.0202 46 1 2.4647 -2.1286 -2.3192 47 1 2.3960 -1.4153 -0.6898 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172496607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:37 Heat of formation + Delta-G solvation = 61.416285 kcal Electronic energy + Delta-G solvation = -27012.276122 eV Core-core repulsion = 23425.801114 eV Total energy + Delta-G solvation = -3586.475008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.25598 -39.14660 -38.40695 -34.98209 -34.61264 -33.15264 -31.16634 -30.39784 -28.77676 -27.95185 -27.43095 -25.96726 -25.02471 -23.96297 -23.02636 -21.52152 -21.02037 -20.08060 -18.88523 -17.41115 -17.08678 -16.77577 -16.51160 -16.08513 -15.59786 -15.50735 -14.80155 -14.78719 -14.04797 -13.64366 -13.50828 -13.18869 -13.02865 -12.86224 -12.74653 -12.52976 -12.44773 -12.32971 -12.13687 -12.04000 -11.61647 -11.42414 -11.23796 -11.13937 -10.99495 -10.67827 -10.57619 -10.20509 -10.04095 -10.01339 -9.82855 -9.74780 -9.53847 -8.69578 -8.35576 -8.17094 -7.96944 -6.19548 -3.86812 1.72030 2.51384 2.73641 3.17459 3.52772 3.55980 3.73653 3.95713 4.19342 4.42377 4.67258 4.68815 4.79273 4.81375 4.88222 4.89856 5.00899 5.04862 5.11616 5.19636 5.21521 5.26360 5.40524 5.48402 5.52372 5.56300 5.58188 5.63800 5.64791 5.84425 5.89423 6.03273 6.11702 6.15540 6.24123 6.40000 6.52440 6.59408 6.73124 6.75864 7.11808 7.25831 7.34482 7.65833 7.86735 8.40921 8.65280 8.70277 9.07034 9.84870 11.21492 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.015363 B = 0.003901 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.155040 B = 7176.653151 C = 7634.492773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.389 6.389 3 C 0.062 3.938 4 C -0.005 4.005 5 H 0.108 0.892 6 C 0.067 3.933 7 N -0.519 5.519 8 C 0.085 3.915 9 H 0.083 0.917 10 C -0.187 4.187 11 C -0.099 4.099 12 C 0.015 3.985 13 C -0.600 4.600 14 H 0.044 0.956 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 1.065 2.935 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.139 3.861 22 C -0.011 4.011 23 N -0.259 5.259 24 N -0.107 5.107 25 N -0.274 5.274 26 C 0.092 3.908 27 C -0.007 4.007 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.024 0.976 41 H 0.000 1.000 42 H 0.269 0.731 43 H 0.055 0.945 44 H 0.109 0.891 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.754 3.700 -4.191 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.308 6.308 3 C -0.016 4.016 4 C -0.026 4.026 5 H 0.126 0.874 6 C -0.062 4.062 7 N -0.243 5.243 8 C -0.022 4.022 9 H 0.101 0.899 10 C -0.246 4.246 11 C -0.137 4.137 12 C -0.022 4.022 13 C -0.639 4.639 14 H 0.062 0.938 15 C -0.189 4.189 16 N -0.553 5.553 17 Si 0.893 3.107 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.215 1.215 21 C 0.010 3.990 22 C -0.152 4.152 23 N -0.123 5.123 24 N -0.085 5.085 25 N -0.065 5.065 26 C -0.049 4.049 27 C -0.142 4.142 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.018 0.982 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.127 0.873 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.961 1.355 -4.940 21.578 hybrid contribution -2.170 2.253 0.138 3.131 sum -23.131 3.608 -4.802 23.898 Atomic orbital electron populations 1.22779 0.81140 1.03019 1.00351 1.88112 1.19873 1.27466 1.95373 1.22553 0.92745 0.85135 1.01120 1.19863 0.92193 0.98563 0.92008 0.87381 1.21991 0.89239 0.93178 1.01783 1.61964 1.07305 1.41124 1.13910 1.21909 0.96370 0.85563 0.98405 0.89932 1.22531 1.00504 0.99857 1.01733 1.21648 0.90268 1.00582 1.01162 1.19137 0.96025 0.93290 0.93722 1.22114 0.95650 1.17892 1.28228 0.93760 1.25738 1.05954 0.93181 0.94033 1.70753 1.12160 1.38978 1.33397 0.83614 0.74948 0.76088 0.76001 1.20929 1.21640 1.21539 1.20399 1.00039 0.91751 0.86817 1.21650 0.98031 1.02106 0.93436 1.74686 1.15016 1.03392 1.19223 1.78615 1.03118 1.19857 1.06913 1.46686 1.23222 1.22747 1.13806 1.22641 0.84561 0.93338 1.04339 1.21509 0.99608 0.94817 0.98295 0.94013 0.89329 0.93624 0.91647 0.92968 0.89326 0.94180 0.92347 0.93263 0.91934 0.92891 0.92798 0.95737 0.98210 0.92043 0.92745 0.87320 0.89668 0.89565 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.37 101.05 1.05 1.16 16 2 O -0.39 -3.04 5.27 -35.23 -0.19 -3.23 16 3 C 0.06 0.51 5.20 37.16 0.19 0.71 16 4 C -0.01 -0.06 2.95 -91.52 -0.27 -0.33 16 5 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 6 C 0.07 0.80 4.13 -3.50 -0.01 0.79 16 7 N -0.52 -8.18 3.96 -227.37 -0.90 -9.08 16 8 C 0.09 1.33 2.33 -67.71 -0.16 1.18 16 9 H 0.08 1.28 7.98 -51.93 -0.41 0.86 16 10 C -0.19 -2.34 8.51 37.15 0.32 -2.03 16 11 C -0.10 -1.98 4.41 -26.73 -0.12 -2.10 16 12 C 0.02 0.39 4.22 -27.89 -0.12 0.28 16 13 C -0.60 -17.57 9.11 -34.44 -0.31 -17.88 16 14 H 0.04 1.28 7.74 -52.49 -0.41 0.87 16 15 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 16 N -0.92 -29.01 13.65 55.43 0.76 -28.25 16 17 Si 1.06 26.37 29.90 -169.99 -5.08 21.29 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.14 2.32 5.02 -4.79 -0.02 2.29 16 22 C -0.01 -0.19 7.21 -83.15 -0.60 -0.79 16 23 N -0.26 -5.02 12.39 33.17 0.41 -4.61 16 24 N -0.11 -1.90 13.20 60.35 0.80 -1.10 16 25 N -0.27 -3.97 3.72 -63.99 -0.24 -4.21 16 26 C 0.09 0.88 9.23 59.85 0.55 1.43 16 27 C -0.01 -0.11 6.26 -82.51 -0.52 -0.62 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.05 0.43 8.11 -51.93 -0.42 0.01 16 33 H 0.09 0.91 7.89 -51.93 -0.41 0.50 16 34 H 0.04 0.43 7.06 -51.93 -0.37 0.07 16 35 H 0.06 0.74 6.58 -51.93 -0.34 0.40 16 36 H 0.05 0.53 6.66 -51.93 -0.35 0.18 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 1.10 6.27 -51.93 -0.33 0.77 16 40 H 0.02 0.67 7.48 -51.93 -0.39 0.29 16 41 H 0.00 -0.01 8.01 -51.92 -0.42 -0.43 16 42 H 0.27 8.51 7.22 -40.82 -0.29 8.21 16 43 H 0.05 0.81 6.22 -51.93 -0.32 0.49 16 44 H 0.11 2.10 6.49 -51.93 -0.34 1.76 16 45 H 0.08 0.65 6.70 -51.93 -0.35 0.30 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.12 1.07 5.99 -51.93 -0.31 0.76 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -35.41 359.39 -6.78 -42.19 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -7.63 Total: -2.82 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -0.12 Total: -15.59 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.82 Total: -47.25 kcal Atomic # 8 Polarization: -3.04 SS G_CDS: -0.19 Total: -3.23 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -5.08 Total: 21.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.41 -6.78 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.602 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds