Wall clock time and date at job start Tue Mar 31 2020 10:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46661 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99223 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00232 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31618 * 120.00220 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 120.00127 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47382 * 89.99276 * 13 11 9 15 15 H 1.48499 * 109.47097 * 209.99526 * 13 11 9 16 16 H 1.48502 * 109.46778 * 329.99345 * 13 11 9 17 17 N 1.46493 * 109.47372 * 239.99771 * 2 1 3 18 18 C 1.34778 * 120.00226 * 85.00029 * 17 2 1 19 19 O 1.21281 * 119.99825 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 C 1.53005 * 109.46769 * 179.97438 * 20 18 17 22 22 N 1.46503 * 109.46622 * 179.97438 * 21 20 18 23 23 C 1.36878 * 126.39541 * 90.00515 * 22 21 20 24 24 C 1.34668 * 106.81610 * 179.97438 * 23 22 21 25 25 N 1.34125 * 108.02326 * 359.97438 * 24 23 22 26 26 C 1.30506 * 109.25217 * 359.72646 * 25 24 23 27 27 H 1.09002 * 109.47074 * 60.00645 * 1 2 3 28 28 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47849 * 300.00752 * 1 2 3 30 30 H 1.09001 * 109.46993 * 65.00101 * 4 2 1 31 31 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 32 32 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 33 33 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 34 34 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 35 35 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 36 36 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 37 37 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 38 38 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 39 39 H 0.97001 * 120.00655 * 180.02562 * 12 11 9 40 40 H 0.97003 * 119.99788 * 264.99268 * 17 2 1 41 41 H 1.09000 * 109.47305 * 299.99746 * 20 18 17 42 42 H 1.08993 * 109.47118 * 59.99813 * 20 18 17 43 43 H 1.09000 * 109.47129 * 300.00012 * 21 20 18 44 44 H 1.09003 * 109.47308 * 59.99949 * 21 20 18 45 45 H 1.07999 * 126.59583 * 359.95807 * 23 22 21 46 46 H 1.08004 * 125.98958 * 180.02562 * 24 23 22 47 47 H 1.08001 * 125.64966 * 180.28482 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0748 -1.3347 2.5629 7 6 5.5996 -1.2262 2.6277 8 7 6.0878 -1.9166 3.8239 9 6 7.4299 -1.9529 4.0937 10 1 8.1284 -1.4722 3.4247 11 6 7.8925 -2.6067 5.2274 12 7 9.1824 -2.6411 5.4870 13 14 6.6844 -3.4376 6.3849 14 1 6.4797 -4.8455 5.9594 15 1 7.2260 -3.4119 7.7674 16 1 5.3872 -2.7157 6.3479 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8583 1.1583 -2.4117 20 6 2.6501 -0.7287 -3.5873 21 6 2.7009 0.2542 -4.7588 22 7 3.1904 -0.4363 -5.9546 23 6 2.4273 -1.0863 -6.8867 24 6 3.2750 -1.5744 -7.8123 25 7 4.5215 -1.2313 -7.4555 26 6 4.4780 -0.5441 -6.3469 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 1.7516 -1.7713 1.2058 31 1 1.6053 -0.2615 2.1370 32 1 3.8530 0.4372 1.3574 33 1 3.9994 -1.0727 0.4262 34 1 3.6401 -0.8755 3.4507 35 1 3.7865 -2.3850 2.5188 36 1 6.0345 -1.6850 1.7398 37 1 5.8874 -0.1758 2.6719 38 1 5.4606 -2.3487 4.4245 39 1 9.5058 -3.0983 6.2790 40 1 2.2492 -1.6318 -1.1524 41 1 3.6494 -1.1205 -3.3977 42 1 1.9780 -1.5510 -3.8323 43 1 1.7014 0.6455 -4.9483 44 1 3.3728 1.0768 -4.5140 45 1 1.3522 -1.1884 -6.8808 46 1 2.9992 -2.1419 -8.6889 47 1 5.3309 -0.1325 -5.8276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174579708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:22 Heat of formation + Delta-G solvation = -6.844871 kcal Electronic energy + Delta-G solvation = -24221.689777 eV Core-core repulsion = 20632.254743 eV Total energy + Delta-G solvation = -3589.435034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.93968 -40.94256 -38.17279 -36.99922 -35.71529 -34.78839 -33.30261 -32.26687 -30.96788 -30.21079 -29.05354 -26.03460 -25.51178 -23.50940 -22.28103 -22.24986 -22.02837 -21.60608 -21.35363 -19.63022 -18.76609 -17.51955 -17.36935 -16.73179 -16.62696 -16.35173 -15.99093 -15.81549 -15.29263 -15.01652 -14.87439 -14.76933 -14.55390 -14.47810 -14.17192 -14.09876 -13.91919 -13.50286 -13.41495 -13.05053 -12.96718 -12.92803 -12.46569 -12.36752 -12.29859 -12.05575 -11.89302 -11.78957 -11.50838 -11.44042 -11.05521 -10.98280 -10.91363 -10.56873 -10.06899 -9.43910 -9.32223 -8.04960 -5.39385 1.13407 1.36642 1.41534 1.49161 1.60237 1.73607 2.24113 2.37317 2.47334 3.25960 3.48418 3.63477 3.72009 3.82888 3.91001 3.93166 4.02680 4.08026 4.15421 4.33859 4.37247 4.40405 4.45688 4.57467 4.63479 4.63776 4.76182 4.81208 4.82134 4.87324 4.92169 4.98057 5.01960 5.12535 5.25138 5.32540 5.35416 5.43039 5.49944 5.59777 5.72925 5.84549 6.19347 6.26498 6.54176 7.06044 7.16145 7.23363 7.82335 8.02250 9.16622 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.002187 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.671399 B =12797.417035 C =14392.526627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.068 0.932 4 C -0.117 4.117 5 C -0.107 4.107 6 C -0.117 4.117 7 C 0.149 3.851 8 N -0.761 5.761 9 C -0.241 4.241 10 H 0.052 0.948 11 C -0.069 4.069 12 N -0.985 5.985 13 Si 0.963 3.037 14 H -0.275 1.275 15 H -0.295 1.295 16 H -0.249 1.249 17 N -0.713 5.713 18 C 0.520 3.480 19 O -0.582 6.582 20 C -0.148 4.148 21 C 0.124 3.876 22 N -0.456 5.456 23 C -0.049 4.049 24 C -0.060 4.060 25 N -0.540 5.540 26 C 0.172 3.828 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.022 0.978 37 H 0.015 0.985 38 H 0.367 0.633 39 H 0.259 0.741 40 H 0.414 0.586 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.202 0.798 46 H 0.179 0.821 47 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.780 3.042 -20.884 32.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.086 0.914 4 C -0.155 4.155 5 C -0.145 4.145 6 C -0.155 4.155 7 C 0.023 3.977 8 N -0.407 5.407 9 C -0.372 4.372 10 H 0.070 0.930 11 C -0.260 4.260 12 N -0.635 5.635 13 Si 0.789 3.211 14 H -0.201 1.201 15 H -0.222 1.222 16 H -0.173 1.173 17 N -0.365 5.365 18 C 0.306 3.694 19 O -0.462 6.462 20 C -0.188 4.188 21 C 0.002 3.998 22 N -0.138 5.138 23 C -0.182 4.182 24 C -0.206 4.206 25 N -0.259 5.259 26 C -0.110 4.110 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.201 0.799 39 H 0.068 0.932 40 H 0.251 0.749 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.219 0.781 46 H 0.196 0.804 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -24.120 3.803 -21.268 32.381 hybrid contribution -0.349 -0.597 1.308 1.480 sum -24.470 3.206 -19.960 31.740 Atomic orbital electron populations 1.22113 0.94442 1.02794 1.02205 1.20956 0.94361 0.96758 0.84100 0.91389 1.21850 0.94595 1.02071 0.96985 1.21434 0.95858 1.00198 0.97031 1.21674 0.93099 1.01531 0.99177 1.20859 0.94488 0.94383 0.87936 1.42763 1.03466 1.66757 1.27718 1.19062 0.84051 1.28144 1.05977 0.93021 1.25638 0.97761 1.02146 1.00501 1.69901 1.14306 1.49829 1.29496 0.85298 0.79195 0.78897 0.77716 1.20058 1.22182 1.17344 1.46078 1.66386 1.14803 1.09194 1.20659 0.76780 0.86714 0.85202 1.90729 1.52080 1.17655 1.85735 1.21934 1.05501 0.99875 0.91491 1.21606 1.03038 0.94069 0.81114 1.45717 1.07499 1.40724 1.19884 1.23210 0.99696 1.02810 0.92509 1.22696 0.88514 1.06750 1.02680 1.70277 1.25518 1.16408 1.13681 1.25497 0.87937 1.02316 0.95246 0.93699 0.91182 0.90811 0.89618 0.89590 0.92706 0.91438 0.91809 0.91041 0.96032 0.96700 0.79943 0.93247 0.74902 0.86885 0.86290 0.87845 0.88050 0.78094 0.80355 0.76032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.48 71.98 0.68 -1.16 16 2 C 0.14 1.90 2.57 44.99 0.12 2.01 16 3 H 0.07 1.24 7.58 -2.38 -0.02 1.22 16 4 C -0.12 -1.47 4.75 30.59 0.15 -1.32 16 5 C -0.11 -1.96 5.10 30.60 0.16 -1.81 16 6 C -0.12 -2.93 5.33 30.60 0.16 -2.77 16 7 C 0.15 5.51 6.26 86.38 0.54 6.05 16 8 N -0.76 -35.66 5.41 -343.47 -1.86 -37.52 16 9 C -0.24 -14.05 10.47 84.03 0.88 -13.17 16 10 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 11 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 12 N -0.99 -63.75 13.97 21.65 0.30 -63.45 16 13 Si 0.96 45.08 27.74 68.60 1.90 46.98 16 14 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 15 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 16 H -0.25 -10.37 6.52 99.48 0.65 -9.72 16 17 N -0.71 -7.77 4.53 -442.54 -2.00 -9.78 16 18 C 0.52 7.01 7.79 87.66 0.68 7.69 16 19 O -0.58 -12.58 15.65 -3.03 -0.05 -12.62 16 20 C -0.15 -1.11 6.02 29.85 0.18 -0.93 16 21 C 0.12 1.17 5.44 86.38 0.47 1.64 16 22 N -0.46 -5.71 2.75 -529.05 -1.46 -7.16 16 23 C -0.05 -0.61 11.58 83.09 0.96 0.35 16 24 C -0.06 -1.02 11.87 83.52 0.99 -0.03 16 25 N -0.54 -11.82 11.25 -200.31 -2.25 -14.08 16 26 C 0.17 2.81 12.56 180.26 2.26 5.07 16 27 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.17 7.75 -2.39 -0.02 1.15 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 36 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.37 16.05 5.53 -92.71 -0.51 15.54 16 39 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 40 H 0.41 2.62 8.60 -92.71 -0.80 1.82 16 41 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.10 0.95 8.10 -2.39 -0.02 0.93 16 44 H 0.10 1.05 8.10 -2.39 -0.02 1.03 16 45 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 46 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 47 H 0.22 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -80.65 390.67 2.87 -77.78 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.42 Total: 21.87 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 8.70 Total: -2.02 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -7.27 Total: -131.99 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.05 Total: -12.62 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Total: -80.65 2.87 -77.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174579708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.935 kcal (2) G-P(sol) polarization free energy of solvation -80.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds