Wall clock time and date at job start Tue Mar 31 2020 10:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47569 * 2 1 4 4 C 1.50697 * 109.47626 * 120.00384 * 2 1 3 5 5 C 1.35372 * 126.37918 * 325.32281 * 4 2 1 6 6 C 1.41505 * 105.49952 * 180.13525 * 5 4 2 7 7 C 1.47714 * 126.51699 * 179.84374 * 6 5 4 8 8 O 1.21562 * 119.99786 * 359.71308 * 7 6 5 9 9 N 1.34776 * 119.99657 * 179.72049 * 7 6 5 10 10 C 1.46498 * 119.99643 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47414 * 34.99485 * 10 9 7 12 12 C 1.53003 * 109.47179 * 274.99554 * 10 9 7 13 13 C 1.53004 * 109.47120 * 154.99820 * 10 9 7 14 14 N 1.46496 * 109.46846 * 304.99424 * 13 10 9 15 15 C 1.46504 * 120.00437 * 269.99871 * 14 13 10 16 16 C 1.36940 * 120.00035 * 90.00508 * 14 13 10 17 17 H 1.08003 * 119.99347 * 342.69937 * 16 14 13 18 18 C 1.38806 * 120.00187 * 162.98099 * 16 14 13 19 19 N 1.31614 * 120.00209 * 345.46853 * 18 16 14 20 20 Si 1.86798 * 119.99898 * 165.47323 * 18 16 14 21 21 H 1.48504 * 109.47493 * 59.99934 * 20 18 16 22 22 H 1.48505 * 109.47218 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47347 * 299.99474 * 20 18 16 24 24 N 1.31813 * 106.96479 * 359.58412 * 6 5 4 25 25 N 1.28470 * 110.07333 * 0.26288 * 24 6 5 26 26 C 1.46496 * 124.88435 * 180.02562 * 25 24 6 27 27 H 1.09008 * 109.46731 * 300.00049 * 1 2 3 28 28 H 1.09002 * 109.46716 * 59.99531 * 1 2 3 29 29 H 1.08995 * 109.47079 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47080 * 240.00318 * 2 1 3 31 31 H 1.09004 * 109.46660 * 60.00061 * 3 2 1 32 32 H 1.08997 * 109.47451 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46972 * 300.00505 * 3 2 1 34 34 H 1.07997 * 127.24958 * 359.97438 * 5 4 2 35 35 H 0.96998 * 120.00037 * 359.97438 * 9 7 6 36 36 H 1.08995 * 109.47429 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.46891 * 300.00251 * 12 10 9 38 38 H 1.09003 * 109.46738 * 59.99736 * 12 10 9 39 39 H 1.09002 * 109.46595 * 184.99763 * 13 10 9 40 40 H 1.08993 * 109.47104 * 64.99760 * 13 10 9 41 41 H 1.08994 * 109.47181 * 265.06570 * 15 14 13 42 42 H 1.09006 * 109.46583 * 25.06854 * 15 14 13 43 43 H 1.08995 * 109.47110 * 145.05887 * 15 14 13 44 44 H 0.97006 * 120.00465 * 180.02562 * 19 18 16 45 45 H 1.09005 * 109.47423 * 90.02267 * 26 25 24 46 46 H 1.09005 * 109.46904 * 210.02124 * 26 25 24 47 47 H 1.09000 * 109.47231 * 330.01851 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.4551 -0.7014 2.4548 6 6 2.2887 -1.5015 3.2718 7 6 2.0889 -1.8015 4.7042 8 8 1.1324 -1.3383 5.2946 9 7 2.9671 -2.5885 5.3567 10 6 2.7687 -2.8865 6.7773 11 1 1.7019 -2.9663 6.9863 12 6 3.3715 -1.7631 7.6231 13 6 3.4562 -4.2093 7.1218 14 7 2.9641 -5.2621 6.2299 15 6 1.7920 -6.0550 6.6092 16 6 3.5998 -5.5053 5.0416 17 1 4.2706 -4.7672 4.6272 18 6 3.3775 -6.6978 4.3669 19 7 2.7964 -7.7046 4.9840 20 14 3.9033 -6.8737 2.5831 21 1 5.3704 -6.6695 2.4770 22 1 3.5568 -8.2333 2.0966 23 1 3.2012 -5.8583 1.7576 24 7 3.2742 -1.9327 2.5101 25 7 3.1390 -1.4797 1.3155 26 6 4.0534 -1.7581 0.2053 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 0.5505 -0.1891 2.7472 35 1 3.7301 -2.9583 4.8855 36 1 3.2242 -1.9849 8.6800 37 1 4.4383 -1.6833 7.4141 38 1 2.8817 -0.8207 7.3776 39 1 3.2344 -4.4755 8.1553 40 1 4.5336 -4.1019 6.9974 41 1 2.1173 -6.9760 7.0927 42 1 1.1731 -5.4813 7.2991 43 1 1.2133 -6.2973 5.7178 44 1 2.6413 -8.5382 4.5126 45 1 3.7238 -2.6539 -0.3210 46 1 4.0570 -0.9129 -0.4830 47 1 5.0597 -1.9145 0.5939 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310882.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:21 Heat of formation + Delta-G solvation = 56.892874 kcal Electronic energy + Delta-G solvation = -26631.736674 eV Core-core repulsion = 23045.065517 eV Total energy + Delta-G solvation = -3586.671158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.53348 -38.92555 -36.26314 -35.90785 -33.94380 -33.35657 -31.28414 -30.11638 -29.41460 -27.40665 -27.25167 -26.10867 -25.54505 -23.46921 -22.60025 -21.52396 -20.26778 -19.86846 -19.15458 -17.30832 -16.68119 -16.18885 -16.01090 -15.40193 -14.95707 -14.73707 -14.19553 -14.13467 -13.84047 -13.67381 -13.42687 -13.25623 -12.97579 -12.85051 -12.65828 -12.62992 -12.37041 -12.08999 -11.87623 -11.74859 -11.52632 -11.44584 -11.10743 -10.98171 -10.80615 -10.77921 -10.52391 -10.32477 -10.22900 -9.97137 -9.78714 -9.47739 -8.90533 -8.76706 -8.47299 -8.27823 -6.74472 -5.66994 -3.07706 1.92747 2.31936 2.58376 3.39130 3.44738 3.46896 3.80699 4.01347 4.33314 4.44992 4.53674 4.64513 4.85464 4.99269 5.10808 5.13048 5.28260 5.36727 5.39283 5.44932 5.55672 5.57091 5.62431 5.64678 5.71919 5.86229 5.87365 5.95694 5.98850 6.02189 6.17980 6.21855 6.28602 6.51699 6.54393 6.63982 6.83996 6.89580 6.91377 7.24557 7.51407 7.73713 7.86931 8.05203 8.37114 8.41723 8.89010 9.28433 9.92621 10.39715 11.38234 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.005052 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.948003 B = 5541.289615 C = 6986.351820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.022 4.022 3 C -0.143 4.143 4 C 0.009 3.991 5 C -0.176 4.176 6 C -0.006 4.006 7 C 0.602 3.398 8 O -0.554 6.554 9 N -0.681 5.681 10 C 0.116 3.884 11 H 0.078 0.922 12 C -0.158 4.158 13 C 0.142 3.858 14 N -0.601 5.601 15 C 0.166 3.834 16 C -0.242 4.242 17 H 0.067 0.933 18 C 0.001 3.999 19 N -0.909 5.909 20 Si 0.899 3.101 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.286 1.286 24 N -0.252 5.252 25 N -0.284 5.284 26 C 0.085 3.915 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.157 0.843 35 H 0.409 0.591 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.026 0.974 42 H -0.005 1.005 43 H 0.047 0.953 44 H 0.251 0.749 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.608 16.268 -9.476 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.042 4.042 3 C -0.201 4.201 4 C -0.115 4.115 5 C -0.204 4.204 6 C -0.166 4.166 7 C 0.386 3.614 8 O -0.431 6.431 9 N -0.331 5.331 10 C 0.008 3.992 11 H 0.097 0.903 12 C -0.217 4.217 13 C 0.014 3.986 14 N -0.323 5.323 15 C 0.021 3.979 16 C -0.371 4.371 17 H 0.085 0.915 18 C -0.197 4.197 19 N -0.555 5.555 20 Si 0.730 3.270 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.213 1.213 24 N -0.087 5.087 25 N -0.072 5.072 26 C -0.055 4.055 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.175 0.825 35 H 0.246 0.754 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.014 0.986 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.102 0.898 46 H 0.110 0.890 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.968 15.663 -9.165 18.173 hybrid contribution -0.052 -0.073 -1.408 1.411 sum 0.916 15.590 -10.574 18.860 Atomic orbital electron populations 1.21820 0.93124 1.02701 1.02411 1.19627 0.96759 0.95243 0.92607 1.21850 1.00936 0.94764 1.02529 1.21281 0.91370 1.00821 0.98031 1.21399 1.02721 1.05065 0.91210 1.22036 0.95710 1.03251 0.95611 1.16854 0.82461 0.78827 0.83295 1.90710 1.30848 1.54103 1.67468 1.45803 1.27918 1.48084 1.11266 1.21927 1.01654 0.96085 0.79506 0.90342 1.22127 1.00726 0.99156 0.99714 1.21049 0.96729 0.87040 0.93808 1.43884 1.31053 1.37769 1.19597 1.20799 0.87213 0.92465 0.97420 1.19032 1.22913 0.99110 0.96078 0.91495 1.24835 1.01017 0.95344 0.98512 1.70093 1.47727 1.02753 1.34902 0.86395 0.78184 0.76553 0.85870 1.21042 1.21856 1.21309 1.73647 1.24314 1.19507 0.91250 1.45272 1.19417 1.34575 1.07923 1.22117 0.93946 1.03023 0.86452 0.91706 0.91970 0.92080 0.90365 0.91823 0.92817 0.91888 0.82511 0.75417 0.92039 0.92900 0.92821 0.92860 0.93030 0.95534 0.98614 0.93427 0.93867 0.89843 0.89025 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.78 37.16 0.33 -0.90 16 2 C -0.02 -0.20 2.89 -91.77 -0.27 -0.47 16 3 C -0.14 -1.09 9.18 37.16 0.34 -0.74 16 4 C 0.01 0.12 5.84 -82.21 -0.48 -0.36 16 5 C -0.18 -2.83 9.95 -39.36 -0.39 -3.22 16 6 C -0.01 -0.11 7.13 -82.76 -0.59 -0.70 16 7 C 0.60 12.62 7.79 -12.39 -0.10 12.53 16 8 O -0.55 -12.61 16.59 5.31 0.09 -12.52 16 9 N -0.68 -13.80 4.49 -54.79 -0.25 -14.05 16 10 C 0.12 2.22 2.88 -67.93 -0.20 2.02 16 11 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 12 C -0.16 -2.47 9.48 37.16 0.35 -2.12 16 13 C 0.14 2.90 5.30 -4.04 -0.02 2.87 16 14 N -0.60 -15.12 2.82 -181.12 -0.51 -15.63 16 15 C 0.17 4.24 8.97 59.85 0.54 4.78 16 16 C -0.24 -6.54 8.81 -15.06 -0.13 -6.68 16 17 H 0.07 1.75 6.40 -52.48 -0.34 1.41 16 18 C 0.00 0.01 5.09 -17.44 -0.09 -0.07 16 19 N -0.91 -26.87 10.45 55.49 0.58 -26.29 16 20 Si 0.90 22.30 29.58 -169.99 -5.03 17.27 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 N -0.25 -4.60 11.67 33.42 0.39 -4.21 16 25 N -0.28 -4.10 3.70 -63.85 -0.24 -4.34 16 26 C 0.09 0.82 10.89 59.84 0.65 1.47 16 27 H 0.06 0.57 7.35 -51.92 -0.38 0.19 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.60 7.42 -51.93 -0.39 0.21 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.16 2.34 7.46 -52.49 -0.39 1.95 16 35 H 0.41 8.46 6.31 -40.82 -0.26 8.21 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 1.00 8.07 -51.93 -0.42 0.58 16 40 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 41 H 0.03 0.72 7.51 -51.93 -0.39 0.33 16 42 H 0.00 -0.11 8.03 -51.93 -0.42 -0.53 16 43 H 0.05 1.34 6.95 -51.93 -0.36 0.97 16 44 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 0.56 7.45 -51.93 -0.39 0.17 16 47 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -34.10 381.90 -7.16 -41.26 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.90 Total: 4.35 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.05 Total: 8.40 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -0.02 Total: -64.52 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.10 -7.16 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310882.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.155 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds