Wall clock time and date at job start Tue Mar 31 2020 10:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46844 * 2 1 4 4 C 1.50701 * 109.46961 * 119.99397 * 2 1 3 5 5 C 1.35360 * 126.39129 * 325.31996 * 4 2 1 6 6 C 1.41495 * 105.50826 * 180.08818 * 5 4 2 7 7 C 1.47713 * 126.52381 * 179.90121 * 6 5 4 8 8 O 1.21579 * 119.99572 * 359.71886 * 7 6 5 9 9 N 1.34770 * 120.00327 * 179.71091 * 7 6 5 10 10 C 1.46502 * 120.00052 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47078 * 325.00479 * 10 9 7 12 12 C 1.53003 * 109.47255 * 85.00318 * 10 9 7 13 13 C 1.53002 * 109.46983 * 205.00301 * 10 9 7 14 14 N 1.46495 * 109.47352 * 55.00440 * 13 10 9 15 15 C 1.46501 * 119.99450 * 270.00059 * 14 13 10 16 16 C 1.36931 * 120.00510 * 89.99478 * 14 13 10 17 17 H 1.07996 * 119.99905 * 20.38539 * 16 14 13 18 18 C 1.38815 * 120.00269 * 200.38500 * 16 14 13 19 19 N 1.31622 * 119.99988 * 14.99859 * 18 16 14 20 20 Si 1.86801 * 119.99903 * 195.00979 * 18 16 14 21 21 H 1.48495 * 109.47460 * 84.99852 * 20 18 16 22 22 H 1.48500 * 109.46532 * 204.99920 * 20 18 16 23 23 H 1.48500 * 109.46980 * 324.99648 * 20 18 16 24 24 N 1.31817 * 106.96270 * 359.64502 * 6 5 4 25 25 N 1.28463 * 110.06900 * 0.22304 * 24 6 5 26 26 C 1.46508 * 124.88190 * 180.02562 * 25 24 6 27 27 H 1.08993 * 109.47046 * 60.00643 * 1 2 3 28 28 H 1.09006 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47422 * 300.00075 * 1 2 3 30 30 H 1.08990 * 109.47302 * 239.99357 * 2 1 3 31 31 H 1.09003 * 109.47298 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46967 * 299.99350 * 3 2 1 33 33 H 1.08990 * 109.47696 * 59.99598 * 3 2 1 34 34 H 1.08005 * 127.24538 * 359.97438 * 5 4 2 35 35 H 0.96998 * 120.00297 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.47040 * 59.99540 * 12 10 9 37 37 H 1.08994 * 109.47159 * 180.02562 * 12 10 9 38 38 H 1.09007 * 109.46790 * 300.00126 * 12 10 9 39 39 H 1.09004 * 109.46910 * 174.99950 * 13 10 9 40 40 H 1.08999 * 109.47123 * 294.99576 * 13 10 9 41 41 H 1.08996 * 109.47445 * 95.13115 * 15 14 13 42 42 H 1.09002 * 109.47148 * 215.12725 * 15 14 13 43 43 H 1.09002 * 109.47505 * 335.11865 * 15 14 13 44 44 H 0.96997 * 119.99778 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.46942 * 90.02324 * 26 25 24 46 46 H 1.09003 * 109.46730 * 210.02321 * 26 25 24 47 47 H 1.09000 * 109.46886 * 330.02231 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.4552 -0.7011 2.4549 6 6 2.2880 -1.5020 3.2717 7 6 2.0874 -1.8032 4.7038 8 8 1.1305 -1.3403 5.2941 9 7 2.9649 -2.5911 5.3561 10 6 2.7656 -2.8902 6.7764 11 1 2.3356 -2.0209 7.2739 12 6 1.8154 -4.0810 6.9184 13 6 4.1113 -3.2320 7.4193 14 7 5.0583 -2.1403 7.1796 15 6 5.9040 -2.1538 5.9834 16 6 5.1531 -1.1074 8.0736 17 1 4.8004 -1.2356 9.0862 18 6 5.7024 0.1045 7.6782 19 7 5.8591 0.3698 6.3985 20 14 6.2195 1.3588 8.9622 21 1 7.5948 1.0504 9.4298 22 1 6.1929 2.7182 8.3650 23 1 5.2819 1.3050 10.1125 24 7 3.2739 -1.9328 2.5102 25 7 3.1390 -1.4794 1.3159 26 6 4.0539 -1.7573 0.2058 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8898 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8898 34 1 0.5505 -0.1887 2.7473 35 1 3.7284 -2.9601 4.8853 36 1 2.2454 -4.9502 6.4208 37 1 1.6668 -4.3032 7.9750 38 1 0.8567 -3.8374 6.4603 39 1 3.9772 -3.3676 8.4925 40 1 4.4993 -4.1522 6.9825 41 1 5.4309 -1.5653 5.1974 42 1 6.8775 -1.7254 6.2219 43 1 6.0330 -3.1806 5.6411 44 1 6.2433 1.2165 6.1223 45 1 3.7246 -2.6530 -0.3208 46 1 4.0576 -0.9118 -0.4822 47 1 5.0600 -1.9136 0.5948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:25 Heat of formation + Delta-G solvation = 55.848378 kcal Electronic energy + Delta-G solvation = -26581.038327 eV Core-core repulsion = 22994.321876 eV Total energy + Delta-G solvation = -3586.716451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.48480 -38.83837 -36.20068 -35.85683 -33.88696 -33.31839 -31.16845 -30.16596 -29.37606 -27.35147 -27.21846 -26.07186 -25.51367 -23.42013 -22.55409 -21.42619 -20.20714 -19.93046 -19.03501 -17.22583 -16.66998 -16.15661 -16.12078 -15.26964 -14.77170 -14.68053 -14.21103 -14.03300 -13.80487 -13.56095 -13.41243 -13.21155 -13.06430 -12.80811 -12.61837 -12.57260 -12.32031 -12.04167 -11.84748 -11.69577 -11.40249 -11.35067 -11.05964 -10.98252 -10.77252 -10.70926 -10.50763 -10.43064 -10.10481 -9.89269 -9.75145 -9.39811 -8.84533 -8.71422 -8.49357 -8.19409 -6.68398 -5.63501 -3.06677 1.97090 2.38894 2.61751 3.44800 3.50653 3.52032 3.85504 4.11879 4.37717 4.48993 4.58588 4.68926 4.89783 4.99005 5.14522 5.15299 5.29227 5.42994 5.44578 5.52490 5.57142 5.61269 5.67490 5.71489 5.80729 5.91578 5.93276 6.01280 6.05981 6.10115 6.20088 6.23475 6.35127 6.56716 6.62357 6.68827 6.76097 6.94322 6.99341 7.32032 7.42938 7.79745 7.89423 8.08735 8.39775 8.46295 8.97097 9.31267 9.95117 10.42602 11.41447 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.004295 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.170911 B = 6518.112912 C = 7371.149399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.021 4.021 3 C -0.145 4.145 4 C 0.009 3.991 5 C -0.175 4.175 6 C 0.000 4.000 7 C 0.605 3.395 8 O -0.548 6.548 9 N -0.684 5.684 10 C 0.115 3.885 11 H 0.086 0.914 12 C -0.159 4.159 13 C 0.143 3.857 14 N -0.597 5.597 15 C 0.163 3.837 16 C -0.255 4.255 17 H 0.069 0.931 18 C 0.004 3.996 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.289 1.289 22 H -0.293 1.293 23 H -0.280 1.280 24 N -0.256 5.256 25 N -0.285 5.285 26 C 0.087 3.913 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.157 0.843 35 H 0.401 0.599 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.034 0.966 42 H 0.041 0.959 43 H -0.006 1.006 44 H 0.250 0.750 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.703 -5.164 -16.310 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.041 4.041 3 C -0.203 4.203 4 C -0.115 4.115 5 C -0.203 4.203 6 C -0.161 4.161 7 C 0.389 3.611 8 O -0.424 6.424 9 N -0.333 5.333 10 C 0.008 3.992 11 H 0.104 0.896 12 C -0.218 4.218 13 C 0.015 3.985 14 N -0.319 5.319 15 C 0.018 3.982 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.195 4.195 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.216 1.216 22 H -0.219 1.219 23 H -0.206 1.206 24 N -0.091 5.091 25 N -0.073 5.073 26 C -0.054 4.054 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.174 0.826 35 H 0.236 0.764 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.013 0.987 44 H 0.060 0.940 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.203 -5.382 -16.006 17.990 hybrid contribution 0.100 1.216 0.284 1.253 sum -6.103 -4.166 -15.722 17.372 Atomic orbital electron populations 1.21815 0.93231 1.02434 1.02506 1.19614 0.96624 0.95375 0.92474 1.21865 1.01189 0.94679 1.02589 1.21257 0.91177 1.00936 0.98089 1.21402 1.02980 1.04819 0.91109 1.22026 0.95115 1.03488 0.95449 1.16789 0.82652 0.78293 0.83337 1.90723 1.31363 1.53081 1.67260 1.45633 1.27108 1.49330 1.11195 1.21916 0.98457 0.97743 0.81090 0.89554 1.22155 0.99850 0.98374 1.01405 1.21187 0.87771 0.91175 0.98383 1.43923 1.40233 1.22684 1.25090 1.20837 0.94931 0.93489 0.88952 1.19187 1.37405 0.90615 0.91244 0.91297 1.24940 1.02075 0.96773 0.95698 1.70097 1.48205 1.23301 1.13104 0.86306 0.78584 0.80849 0.81009 1.21620 1.21921 1.20572 1.73575 1.23130 1.21199 0.91222 1.45234 1.19228 1.35002 1.07819 1.22087 0.94026 1.02799 0.86450 0.91990 0.92266 0.91668 0.90457 0.92655 0.91930 0.91677 0.82577 0.76419 0.93216 0.92066 0.92920 0.92236 0.94022 0.94754 0.94043 0.98734 0.94021 0.90099 0.89098 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.78 37.16 0.33 -0.86 16 2 C -0.02 -0.19 2.89 -91.77 -0.27 -0.46 16 3 C -0.15 -1.31 9.17 37.16 0.34 -0.97 16 4 C 0.01 0.13 5.84 -82.21 -0.48 -0.35 16 5 C -0.18 -2.93 9.95 -39.37 -0.39 -3.33 16 6 C 0.00 0.00 7.13 -82.76 -0.59 -0.59 16 7 C 0.61 13.34 7.79 -12.39 -0.10 13.25 16 8 O -0.55 -13.38 16.59 5.30 0.09 -13.30 16 9 N -0.68 -14.20 4.42 -54.79 -0.24 -14.44 16 10 C 0.12 2.34 2.88 -67.93 -0.20 2.14 16 11 H 0.09 2.06 7.58 -51.93 -0.39 1.67 16 12 C -0.16 -2.58 9.48 37.16 0.35 -2.23 16 13 C 0.14 2.94 5.33 -4.04 -0.02 2.92 16 14 N -0.60 -15.08 2.78 -181.12 -0.50 -15.59 16 15 C 0.16 4.03 7.60 59.85 0.45 4.48 16 16 C -0.25 -7.16 9.68 -15.06 -0.15 -7.31 16 17 H 0.07 1.90 7.86 -52.49 -0.41 1.48 16 18 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 19 N -0.90 -27.07 10.67 55.49 0.59 -26.48 16 20 Si 0.90 22.69 29.58 -169.99 -5.03 17.66 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 N -0.26 -4.57 11.67 33.42 0.39 -4.18 16 25 N -0.28 -4.00 3.70 -63.84 -0.24 -4.24 16 26 C 0.09 0.76 10.89 59.85 0.65 1.41 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.59 7.35 -51.93 -0.38 0.21 16 30 H 0.08 0.56 7.42 -51.93 -0.39 0.18 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.16 2.48 7.46 -52.48 -0.39 2.09 16 35 H 0.40 8.07 6.91 -40.82 -0.28 7.79 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.06 1.17 8.03 -51.93 -0.42 0.75 16 40 H 0.04 0.76 7.86 -51.93 -0.41 0.36 16 41 H 0.03 0.93 6.97 -51.93 -0.36 0.56 16 42 H 0.04 1.11 7.22 -51.93 -0.37 0.74 16 43 H -0.01 -0.13 7.84 -51.93 -0.41 -0.53 16 44 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.56 7.45 -51.93 -0.39 0.18 16 47 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -35.08 382.88 -7.28 -42.37 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.96 Total: 4.31 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.15 Total: 8.11 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: 0.00 Total: -64.91 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.08 -7.28 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.215 kcal (2) G-P(sol) polarization free energy of solvation -35.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds